Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026771 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D022111 4.8e-51 204.1 99 100.0
CSS0033371 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D004403 4.8e-51 204.1 99 100.0
CSS0020018 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D022111 1.7e-48 195.7 99 94.9
CSS0007308 Camellia sinensis var. sinensis HOM05D003511 ORTHO05D022111 6.5e-48 193.7 99 93.9
Actinidia34394 Actinidia chinensis HOM05D003511 ORTHO05D004403 3.1e-42 174.9 93 86.0
vmacro01992 Vaccinium macrocarpon HOM05D003511 ORTHO05D004403 9.1e-42 173.3 93 87.1
Rhsim11G0156500 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.2e-41 172.9 92 88.0
Rhsim11G0158000 Rhododendron simsii HOM05D003511 ORTHO05D004403 1.2e-41 172.9 92 88.0
Dinv42203 Davidia involucrata HOM05D003511 ORTHO05D004403 1.6e-38 162.5 93 81.7
Rhsim10G0162400 Rhododendron simsii HOM05D003511 ORTHO05D004403 2.1e-38 162.2 98 78.6
Duzib052G0193 Durio zibethinus HOM05D003511 ORTHO05D004403 4.7e-38 161.0 98 77.6
TAR381G0671 Trochodendron aralioides HOM05D003511 ORTHO05D004403 4.7e-38 161.0 100 76.0
Duzib132G0449 Durio zibethinus HOM05D003511 ORTHO05D004403 8.0e-38 160.2 98 76.5
Thecc.02G110900 Theobroma cacao HOM05D003511 ORTHO05D004403 1.0e-37 159.8 98 76.5
Oeu029532.2 Olea europaea HOM05D003511 ORTHO05D004403 1.4e-37 159.5 93 81.7
Gorai.008G022200 Gossypium raimondii HOM05D003511 ORTHO05D004403 8.8e-37 156.8 98 74.5
QL11p032729 Quercus lobata HOM05D003511 ORTHO05D004403 1.2e-36 156.4 93 78.5
Cfa004603 Carpinus fangiana HOM05D003511 ORTHO05D004403 4.4e-36 154.5 96 75.0
Gohir.D12G021900 Gossypium hirsutum HOM05D003511 ORTHO05D004403 7.5e-36 153.7 93 76.3
Hma1.2p1_1518F.1_g288460 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 9.8e-36 153.3 93 75.3
Lj5g0008514 Lotus japonicus HOM05D003511 ORTHO05D004403 9.8e-36 153.3 93 77.4
TPR.G19062 Trifolium pratense HOM05D003511 ORTHO05D004403 1.3e-35 152.9 93 77.4
vmacro02525 Vaccinium macrocarpon HOM05D003511 ORTHO05D022111 1.3e-35 152.9 99 73.7
TPR.G19061 Trifolium pratense HOM05D003511 ORTHO05D004403 2.2e-35 152.1 93 78.5
Lj5C215T12 Lonicera japonica HOM05D003511 ORTHO05D004403 3.7e-35 151.4 93 77.4
Manes.10G075800 Manihot esculenta HOM05D003511 ORTHO05D004403 3.7e-35 151.4 97 72.2
Sabra09G0072200 Salix brachista HOM05D003511 ORTHO05D004403 4.9e-35 151.0 96 74.0
FvH4_2g04810 Fragaria vesca HOM05D003511 ORTHO05D004403 6.3e-35 150.6 93 75.3
FAN20G1862 Fragaria x ananassa HOM05D003511 ORTHO05D004403 6.3e-35 150.6 93 75.3
Hma1.2p1_1518F.1_g288470 Hydrangea macrophylla HOM05D003511 ORTHO05D004403 6.3e-35 150.6 93 73.1
RcHm_v2.0_Chr6g0254541 Rosa chinensis HOM05D003511 ORTHO05D004403 6.3e-35 150.6 93 74.2
CANSAT25G1711 Cannabis sativa HOM05D003511 ORTHO05D004403 8.3e-35 150.2 91 76.9
CiPaw.05G013100 Carya illinoinensis HOM05D003511 ORTHO05D004403 8.3e-35 150.2 93 77.4
Gohir.A12G021400 Gossypium hirsutum HOM05D003511 ORTHO05D004403 1.1e-34 149.8 93 74.2
FAN24G0829 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.8e-34 149.1 93 74.2
Oeu013759.1 Olea europaea HOM05D003511 ORTHO05D004403 1.8e-34 149.1 93 74.2
FAN27G0709 Fragaria x ananassa HOM05D003511 ORTHO05D004403 2.4e-34 148.7 93 74.2
GSVIVG01037900001 Vitis vinifera HOM05D003511 ORTHO05D004403 3.1e-34 148.3 93 73.1
Ca_11061_v3 Cicer arietinum L. HOM05D003511 ORTHO05D004403 4.1e-34 147.9 93 75.3
Peaxi162Scf00016g02427 Petunia axillaris HOM05D003511 ORTHO05D004403 4.1e-34 147.9 93 75.3
Potri.009G093900 Populus trichocarpa HOM05D003511 ORTHO05D004403 4.1e-34 147.9 96 72.9
Rhsim10G0162100 Rhododendron simsii HOM05D003511 ORTHO05D004403 4.1e-34 147.9 98 74.5
FAN15G2851 Fragaria x ananassa HOM05D003511 ORTHO05D004403 9.2e-34 146.7 93 73.1
Medtr1g107135 Medicago truncatula HOM05D003511 ORTHO05D004403 9.2e-34 146.7 93 73.1
Haze_10199 Corylus avellana HOM05D003511 ORTHO05D004403 1.2e-33 146.4 88 77.3
Nitab4.5_0001480g0130 Nicotiana tabacum HOM05D003511 ORTHO05D004403 1.2e-33 146.4 93 74.2
Cfa004604 Carpinus fangiana HOM05D003511 ORTHO05D004403 1.6e-33 146.0 93 74.2
Glyma.20G130432 Glycine max HOM05D003511 ORTHO05D004403 1.6e-33 146.0 93 73.1
Glyma.20G130366 Glycine max HOM05D003511 ORTHO05D004403 2.7e-33 145.2 93 72.0
MD10G1099600 Malus domestica HOM05D003511 ORTHO05D022111 3.5e-33 144.8 90 73.3
FvH4_2g04870 Fragaria vesca HOM05D003511 ORTHO05D004403 4.5e-33 144.4 93 69.9
Glyma.10G260900 Glycine max HOM05D003511 ORTHO05D004403 4.5e-33 144.4 93 73.1
QL11p032687 Quercus lobata HOM05D003511 ORTHO05D004403 4.5e-33 144.4 93 69.9
MD10G1099200 Malus domestica HOM05D003511 ORTHO05D004403 7.8e-33 143.7 90 72.2
TWI79G1106 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 7.8e-33 143.7 93 71.0
Nn5g30453 Nelumbo nucifera HOM05D003511 ORTHO05D004403 1.0e-32 143.3 96 70.8
Phvul.007G041400 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 1.0e-32 143.3 93 72.0
Atru.chr5.2456 Acer truncatum HOM05D003511 ORTHO05D004403 1.7e-32 142.5 93 71.0
FAN24G2294 Fragaria x ananassa HOM05D003511 ORTHO05D004403 1.7e-32 142.5 93 68.8
Hund06308 Selenicereus undatus HOM05D003511 ORTHO05D004403 1.7e-32 142.5 93 71.0
MSTRG.20193 Avicennia marina HOM05D003511 ORTHO05D004403 2.3e-32 142.1 93 72.0
CiPaw.05G013200 Carya illinoinensis HOM05D003511 ORTHO05D004403 2.3e-32 142.1 93 72.0
Prupe.8G137300 Prunus persica HOM05D003511 ORTHO05D004403 2.3e-32 142.1 93 73.1
Thecc.02G111000 Theobroma cacao HOM05D003511 ORTHO05D004403 2.3e-32 142.1 95 71.6
arahy.Tifrunner.gnm1.ann1.VN0KJM Arachis hypogaea HOM05D003511 ORTHO05D004403 2.9e-32 141.7 93 71.0
Nitab4.5_0003699g0020 Nicotiana tabacum HOM05D003511 ORTHO05D004403 2.9e-32 141.7 93 69.9
FAN15G0970 Fragaria x ananassa HOM05D003511 ORTHO05D004403 5.0e-32 141.0 93 68.8
Potri.009G093500 Populus trichocarpa HOM05D003511 ORTHO05D004403 5.0e-32 141.0 94 69.1
Lj5A215G58 Lonicera japonica HOM05D003511 ORTHO05D004403 6.6e-32 140.6 98 69.4
Ciclev10027816m.g Citrus clementina HOM05D003511 ORTHO05D004403 8.6e-32 140.2 93 72.0
DCAR_001655 Daucus carota HOM05D003511 ORTHO05D004403 1.1e-31 139.8 89 74.2
Cpa.g.sc106.113 Carica papaya HOM05D003511 ORTHO05D004403 2.5e-31 138.7 93 69.9
Potri.001G299000 Populus trichocarpa HOM05D003511 ORTHO05D004403 2.5e-31 138.7 97 69.1
EL10Ac9g22257 Beta vulgaris HOM05D003511 ORTHO05D004403 4.3e-31 137.9 94 70.2
Aqoxy6G02835 Aquilegia oxysepala HOM05D003511 ORTHO05D004403 5.6e-31 137.5 98 65.3
AUR62039057 Chenopodium quinoa HOM05D003511 ORTHO05D004403 5.6e-31 137.5 94 68.1
MBI16_g09476_MAGBIO Magnolia biondii HOM05D003511 ORTHO05D004403 7.3e-31 137.1 90 70.0
PGR142G1515 Punica granatum HOM05D003511 ORTHO05D004403 7.3e-31 137.1 95 66.3
AUR62010329 Chenopodium quinoa HOM05D003511 ORTHO05D004403 2.1e-30 135.6 94 67.0
Eucgr.I01093 Eucalyptus grandis HOM05D003511 ORTHO05D004403 2.1e-30 135.6 93 68.8
Gorai.008G022000 Gossypium raimondii HOM05D003511 ORTHO05D004403 2.1e-30 135.6 96 66.7
Lalb_Chr06g0165351 Lupinus albus HOM05D003511 ORTHO05D004403 2.1e-30 135.6 95 67.4
Hund00157 Selenicereus undatus HOM05D003511 ORTHO05D004403 2.8e-30 135.2 94 68.1
arahy.Tifrunner.gnm1.ann1.LFSR1E Arachis hypogaea HOM05D003511 ORTHO05D004403 4.7e-30 134.4 87 71.3
Gohir.D12G021700 Gossypium hirsutum HOM05D003511 ORTHO05D004403 4.7e-30 134.4 96 66.7
PSO541G1166 Papaver somniferum HOM05D003511 ORTHO05D004403 6.1e-30 134.0 93 69.9
Lj5C215G13 Lonicera japonica HOM05D003511 ORTHO05D004403 8.0e-30 133.7 97 64.9
CsaV3_3G018140 Cucumis sativus L. HOM05D003511 ORTHO05D004403 1.0e-29 133.3 93 67.7
Sabra09G0072100 Salix brachista HOM05D003511 ORTHO05D004403 1.0e-29 133.3 94 62.8
AUR62039058 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.4e-29 132.9 92 66.3
Manes.10G075700 Manihot esculenta HOM05D003511 ORTHO05D004403 1.4e-29 132.9 93 68.8
Migut.B00398 Erythranthe guttata HOM05D003511 ORTHO05D004403 1.8e-29 132.5 95 65.3
CDE06G2550 Ceratophyllum demersum HOM05D003511 ORTHO05D004403 2.3e-29 132.1 92 64.1
Sabra16G0187500 Salix brachista HOM05D003511 ORTHO05D004403 2.3e-29 132.1 100 60.0
TWI75G1477 Tripterygium wilfordii HOM05D003511 ORTHO05D004403 2.3e-29 132.1 98 62.2
Gohir.A12G021350 Gossypium hirsutum HOM05D003511 ORTHO05D004403 3.0e-29 131.7 96 64.6
Atru.chr5.2454 Acer truncatum HOM05D003511 ORTHO05D004403 6.8e-29 130.6 82 74.4
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 6.8e-29 130.6 102 62.7
Cc02_g19400 Coffea canephora HOM05D003511 ORTHO05D004403 8.9e-29 130.2 93 63.4
Sc08g0001330 Simmondsia chinensis HOM05D003511 ORTHO05D004403 8.9e-29 130.2 93 66.7
AUR62010328 Chenopodium quinoa HOM05D003511 ORTHO05D004403 1.2e-28 129.8 92 66.3
Peaxi162Scf00152g00326 Petunia axillaris HOM05D003511 ORTHO05D004403 1.2e-28 129.8 94 64.9
ClCG05G010350 Citrullus lanatus HOM05D003511 ORTHO05D004403 1.5e-28 129.4 93 66.7
COL.COLO4_32574 Corchorus olitorius HOM05D003511 ORTHO05D004403 3.4e-28 128.3 93 65.6
Eucgr.I01091 Eucalyptus grandis HOM05D003511 ORTHO05D004403 5.7e-28 127.5 93 64.5
HanXRQChr09g0251071 Helianthus annuus HOM05D003511 ORTHO05D004403 5.7e-28 127.5 102 61.8
Sed0017826 Sechium edule HOM05D003511 ORTHO05D004403 5.7e-28 127.5 93 67.7
Eucgr.I01092 Eucalyptus grandis HOM05D003511 ORTHO05D004403 2.9e-27 125.2 93 66.7
Aa31LG2G16810 Aethionema arabicum HOM05D003511 ORTHO05D004403 6.4e-27 124.0 92 64.1
DCAR_029092 Daucus carota HOM05D003511 ORTHO05D004403 6.4e-27 124.0 90 62.2
Manes.07G068400 Manihot esculenta HOM05D003511 ORTHO05D004403 6.4e-27 124.0 93 60.2
Atru.chr5.2453 Acer truncatum HOM05D003511 ORTHO05D004403 8.3e-27 123.6 90 64.4
DCAR_001656 Daucus carota HOM05D003511 ORTHO05D004403 1.8e-26 122.5 95 63.2
SalBow6G6056 Salvia bowleyana HOM05D003511 ORTHO05D004403 5.4e-26 120.9 95 57.9
Lsat_1_v5_gn_9_111920 Lactuca sativa HOM05D003511 ORTHO05D004403 7.0e-26 120.6 102 57.8
Ciclev10027838m.g Citrus clementina HOM05D003511 ORTHO05D004403 1.6e-25 119.4 95 57.9
Os10g0339600 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 1.6e-25 119.4 94 62.8
BcaNung04164 Brassica carinata HOM05D003511 ORTHO05D004403 2.7e-25 118.6 92 62.0
Duzib248G0534 Durio zibethinus HOM05D003511 ORTHO05D004403 4.6e-25 117.9 60 86.7
HPP92_006064 Vanilla planifolia HOM05D003511 ORTHO05D004403 7.8e-25 117.1 89 59.6
Carub.0007s0611 Capsella rubella HOM05D003511 ORTHO05D004403 1.7e-24 115.9 92 59.8
Thhalv10024398m.g Eutrema salsugineum HOM05D003511 ORTHO05D004403 2.3e-24 115.5 92 59.8
ATR0661G369 Amborella trichopoda HOM05D003511 ORTHO05D004403 3.0e-24 115.2 96 58.3
ATR0205G005 Amborella trichopoda HOM05D003511 ORTHO05D004403 3.9e-24 114.8 96 60.4
AL7G17030 Arabidopsis lyrata HOM05D003511 ORTHO05D004403 5.0e-24 114.4 92 58.7
AT4G34260 Arabidopsis thaliana HOM05D003511 ORTHO05D004403 6.6e-24 114.0 92 58.7
A01p04170 Brassica napus HOM05D003511 ORTHO05D004403 6.6e-24 114.0 92 60.9
BraA01t00406Z Brassica rapa HOM05D003511 ORTHO05D004403 6.6e-24 114.0 92 60.9
Glyma.01G243600 Glycine max HOM05D003511 ORTHO05D004403 6.6e-24 114.0 96 57.3
C01p04540 Brassica napus HOM05D003511 ORTHO05D004403 1.1e-23 113.2 92 60.9
BolC1t00439H Brassica oleracea HOM05D003511 ORTHO05D004403 1.1e-23 113.2 92 60.9
BcaNung04986 Brassica carinata HOM05D003511 ORTHO05D004403 1.9e-23 112.5 92 60.9
Phvul.002G053000 Phaseolus vulgaris HOM05D003511 ORTHO05D004403 1.9e-23 112.5 100 53.0
Lsat_1_v5_gn_5_116360 Lactuca sativa HOM05D003511 ORTHO05D004403 3.3e-23 111.7 99 51.5
VMungo1215G0806 Vigna mungo HOM05D003511 ORTHO05D004403 3.3e-23 111.7 100 53.0
Sp7g32040 Schrenkiella parvula HOM05D003511 ORTHO05D004403 4.3e-23 111.3 92 57.6
VMungo0720G0159 Vigna mungo HOM05D003511 ORTHO05D004403 4.3e-23 111.3 58 86.2
CARHR242530 Cardamine hirsuta HOM05D003511 ORTHO05D004403 7.3e-23 110.5 92 57.6
THA.LOC104819550 Tarenaya hassleriana HOM05D003511 ORTHO05D004403 1.6e-22 109.4 92 52.2
HanXRQChr10g0296941 Helianthus annuus HOM05D003511 ORTHO05D004403 2.8e-22 108.6 96 53.1
PGR142G0041 Punica granatum HOM05D003511 ORTHO05D004403 4.7e-22 107.8 93 59.1
Lsat_1_v5_gn_5_116340 Lactuca sativa HOM05D003511 ORTHO05D004403 5.2e-21 104.4 98 48.0
SEGI_38974 Sequoiadendron giganteum HOM05D003511 ORTHO05D004403 6.8e-21 104.0 94 54.3
Os10g0339290 Oryza sativa ssp. japonica HOM05D003511 ORTHO05D004403 5.8e-20 100.9 93 54.8
COL.COLO4_32573 Corchorus olitorius HOM05D003511 ORTHO05D004403 1.9e-18 95.9 51 86.3
Atru.chr5.2448 Acer truncatum HOM05D003511 ORTHO05D004403 2.4e-18 95.5 51 82.4
FAN24G3426 Fragaria x ananassa HOM05D003511 ORTHO05D022111 3.2e-18 95.1 70 61.4
Pp3c19_10350 Physcomitrium patens HOM05D003511 ORTHO05D004403 2.4e-10 68.9 96 42.7
ECA234G0109 Erigeron canadensis HOM05D003511 ORTHO05D004403 1.0e-08 63.5 37 73.0
Mapoly0115s0027 Marchantia polymorpha HOM05D003511 ORTHO05D004403 2.5e-07 58.9 88 38.6


User provided reference genes

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