Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026764 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009762 1.4e-43 179.1 84 100.0
DCAR_029158 Daucus carota HOM05D003975 ORTHO05D009762 2.4e-14 82.0 73 49.3
Cfa008191 Carpinus fangiana HOM05D003975 ORTHO05D009762 1.2e-13 79.7 68 50.0
Haze_13863 Corylus avellana HOM05D003975 ORTHO05D009762 2.6e-13 78.6 66 51.5
TWI39G0436 Tripterygium wilfordii HOM05D003975 ORTHO05D009762 4.4e-13 77.8 68 47.1
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 1.3e-12 76.3 64 50.0
MELO3C006816.2 Cucumis melo HOM05D003975 ORTHO05D009762 2.2e-12 75.5 64 50.0
Atru.chr1.696 Acer truncatum HOM05D003975 ORTHO05D009762 2.4e-11 72.0 68 47.1
Atru.chr1.699 Acer truncatum HOM05D003975 ORTHO05D009762 1.2e-10 69.7 63 49.2
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 1.2e-10 69.7 66 47.0
Sed0001623 Sechium edule HOM05D003975 ORTHO05D009762 1.2e-10 69.7 64 43.8
Rhsim09G0192100 Rhododendron simsii HOM05D000201 ORTHO05D000375 1.6e-10 69.3 62 50.0
Cc00_g07030 Coffea canephora HOM05D003975 ORTHO05D009762 2.1e-10 68.9 67 46.3
Duzib205G1466 Durio zibethinus HOM05D003975 ORTHO05D009762 2.1e-10 68.9 75 46.7
Lj8C41T2 Lonicera japonica HOM05D003975 ORTHO05D009762 2.1e-10 68.9 53 54.7
Potri.004G200900 Populus trichocarpa HOM05D003975 ORTHO05D009762 6.0e-10 67.4 66 43.9
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 6.0e-10 67.4 55 52.7
Sabra15G0031500 Salix brachista HOM05D003975 ORTHO05D009762 7.8e-10 67.0 66 45.5
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 1.3e-09 66.2 59 52.5
Sabra15G0045800 Salix brachista HOM05D003975 ORTHO05D009762 2.3e-09 65.5 66 43.9
Sabra15G0046400 Salix brachista HOM05D003975 ORTHO05D009762 2.3e-09 65.5 66 43.9
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 3.0e-09 65.1 66 43.9
Sabra15G0048500 Salix brachista HOM05D003975 ORTHO05D009762 3.0e-09 65.1 66 43.9
Sabra15G0052100 Salix brachista HOM05D003975 ORTHO05D009762 3.0e-09 65.1 66 43.9
Sabra15G0053100 Salix brachista HOM05D003975 ORTHO05D009762 3.0e-09 65.1 66 43.9
Sabra15G0054000 Salix brachista HOM05D003975 ORTHO05D009762 3.0e-09 65.1 66 43.9
Sabra15G0060200 Salix brachista HOM05D003975 ORTHO05D009762 3.0e-09 65.1 66 43.9
Sabra15G0044600 Salix brachista HOM05D003975 ORTHO05D009762 5.1e-09 64.3 66 43.9
Eucgr.D00222 Eucalyptus grandis HOM05D003975 ORTHO05D009762 6.6e-09 63.9 58 46.6
Carub.0008s2305 Capsella rubella HOM05D003975 ORTHO05D009762 1.1e-08 63.2 67 46.3
Gorai.003G114200 Gossypium raimondii HOM05D003975 ORTHO05D009762 1.1e-08 63.2 55 52.7
MSTRG.8816 Avicennia marina HOM05D003975 ORTHO05D009762 1.5e-08 62.8 68 44.1
AT5G62370 Arabidopsis thaliana HOM05D003975 ORTHO05D009762 1.9e-08 62.4 67 46.3
BcaC04g23418 Brassica carinata HOM05D003975 ORTHO05D009762 3.3e-08 61.6 67 43.3
C09p08550 Brassica napus HOM05D003975 ORTHO05D009762 3.3e-08 61.6 67 43.3
BolC9t53764H Brassica oleracea HOM05D003975 ORTHO05D009762 3.3e-08 61.6 67 43.3
Gohir.D03G107900 Gossypium hirsutum HOM05D003975 ORTHO05D009762 3.3e-08 61.6 55 50.9
CARHR276150 Cardamine hirsuta HOM05D003975 ORTHO05D009762 4.3e-08 61.2 67 47.8
Thhalv10003595m.g Eutrema salsugineum HOM05D003975 ORTHO05D009762 4.3e-08 61.2 67 46.3
Ciclev10004237m.g Citrus clementina HOM05D003975 ORTHO05D009762 5.6e-08 60.8 68 41.2
AL8G39200 Arabidopsis lyrata HOM05D003975 ORTHO05D009762 9.6e-08 60.1 67 44.8
Lsat_1_v5_gn_8_8880 Lactuca sativa HOM05D003975 ORTHO05D009762 1.6e-07 59.3 55 49.1
CANSAT11G0896 Cannabis sativa HOM05D003975 ORTHO05D009762 2.1e-07 58.9 68 36.8
COL.COLO4_14135 Corchorus olitorius HOM05D003975 ORTHO05D009762 2.1e-07 58.9 75 45.3
Dinv28563 Davidia involucrata HOM05D003975 ORTHO05D009762 2.1e-07 58.9 43 62.8
Sp2g25540 Schrenkiella parvula HOM05D003975 ORTHO05D009762 2.1e-07 58.9 67 43.3
CAN.G48.19 Capsicum annuum HOM05D003975 ORTHO05D009762 1.4e-06 56.2 54 40.7
SGA_v2.0_scaffold2G01188 Striga asiatica HOM05D003975 ORTHO05D009762 1.4e-06 56.2 56 46.4
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 1.8e-06 55.8 67 40.3
Manes.15G055100 Manihot esculenta HOM05D003975 ORTHO05D009762 2.4e-06 55.5 72 38.9


User provided reference genes

Program Settings