Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.4e-78 296.2 145 100.0
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.9e-73 278.1 145 93.8
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 8.9e-62 240.4 145 84.8
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 8.9e-62 240.4 145 84.8
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 9.0e-38 160.6 132 64.4
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 2.0e-37 159.5 132 65.2
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 2.6e-37 159.1 127 65.4
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 2.6e-37 159.1 127 66.1
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 3.4e-37 158.7 127 64.6
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 7.6e-37 157.5 127 63.8
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 9.9e-37 157.1 127 64.6
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 9.9e-37 157.1 127 64.6
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 1.3e-36 156.8 127 63.8
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 1.7e-36 156.4 127 63.8
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 2.2e-36 156.0 127 65.4
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 2.2e-36 156.0 127 65.4
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 2.2e-36 156.0 127 64.6
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 3.8e-36 155.2 127 64.6
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 4.9e-36 154.8 127 63.8
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 6.4e-36 154.5 127 63.8
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 6.4e-36 154.5 127 63.8
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 8.4e-36 154.1 127 65.4
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 8.4e-36 154.1 127 63.0
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 1.1e-35 153.7 127 63.0
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 1.4e-35 153.3 127 63.0
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 1.4e-35 153.3 127 63.0
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 1.4e-35 153.3 127 63.0
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 1.4e-35 153.3 127 63.0
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 1.4e-35 153.3 127 63.0
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 1.4e-35 153.3 127 62.2
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 1.4e-35 153.3 127 63.0
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 1.4e-35 153.3 127 63.0
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 1.4e-35 153.3 127 63.0
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 1.9e-35 152.9 127 64.6
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 1.9e-35 152.9 127 64.6
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 2.4e-35 152.5 127 64.6
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 2.4e-35 152.5 127 64.6
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 2.4e-35 152.5 127 64.6
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 2.4e-35 152.5 127 62.2
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 2.4e-35 152.5 127 62.2
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 2.4e-35 152.5 127 62.2
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 2.4e-35 152.5 127 62.2
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 2.4e-35 152.5 127 61.4
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 2.4e-35 152.5 127 63.8
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 2.4e-35 152.5 127 62.2
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 2.4e-35 152.5 127 64.6
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 2.4e-35 152.5 132 61.4
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 3.2e-35 152.1 127 62.2
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 3.2e-35 152.1 127 62.2
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 3.2e-35 152.1 127 62.2
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 4.2e-35 151.8 127 63.8
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 4.2e-35 151.8 153 55.6
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 5.4e-35 151.4 127 61.4
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 5.4e-35 151.4 127 63.0
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 5.4e-35 151.4 127 63.0
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 7.1e-35 151.0 125 64.8
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 9.3e-35 150.6 127 63.0
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 9.3e-35 150.6 127 61.4
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 9.3e-35 150.6 127 62.2
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 1.2e-34 150.2 127 60.6
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 1.2e-34 150.2 127 62.2
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 1.2e-34 150.2 127 61.4
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 1.2e-34 150.2 127 61.4
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 1.6e-34 149.8 127 62.2
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 1.6e-34 149.8 130 60.0
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 2.1e-34 149.4 127 62.2
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 2.7e-34 149.1 143 57.3
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 2.7e-34 149.1 127 60.6
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 2.7e-34 149.1 127 60.6
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 3.5e-34 148.7 139 59.0
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 3.5e-34 148.7 127 59.8
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 3.5e-34 148.7 127 61.4
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 4.6e-34 148.3 127 60.6
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 6.0e-34 147.9 127 59.8
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 1.0e-33 147.1 127 60.6
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 1.3e-33 146.7 127 62.2
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 1.8e-33 146.4 127 60.6
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 2.3e-33 146.0 123 61.8
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 2.3e-33 146.0 127 59.8
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 3.9e-33 145.2 127 59.8
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 6.7e-33 144.4 127 60.6
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 1.1e-32 143.7 127 59.8
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 1.1e-32 143.7 127 59.1
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 2.5e-32 142.5 127 57.5
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 3.3e-32 142.1 127 58.3
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 3.3e-32 142.1 128 57.8
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 4.3e-32 141.7 125 59.2
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 7.4e-32 141.0 139 55.4
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 7.4e-32 141.0 139 55.4
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 1.3e-31 140.2 127 57.5
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 1.7e-28 129.8 125 52.8
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 3.8e-28 128.6 214 40.2
arahy.Tifrunner.gnm1.ann1.D6UD48 Arachis hypogaea HOM05D006266 ORTHO05D008016 2.4e-27 125.9 127 53.5
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 2.4e-27 125.9 125 52.0
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 1.2e-26 123.6 125 50.4
arahy.Tifrunner.gnm1.ann1.JU07H9 Arachis hypogaea HOM05D006266 ORTHO05D008016 2.1e-26 122.9 127 52.8
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 2.7e-26 122.5 125 51.2
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 4.3e-24 115.2 54 100.0
Cre02.g094300 Chlamydomonas reinhardtii HOM05D006266 ORTHO05D008016 2.1e-23 112.8 128 46.9
PRCOL_00003135 Prasinoderma coloniale HOM05D006266 ORTHO05D008016 4.8e-23 111.7 132 44.7
Cfa026422 Carpinus fangiana HOM05D006266 ORTHO05D008016 1.0e-20 104.0 127 46.5
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 3.2e-19 99.0 92 56.5
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 3.2e-19 99.0 92 56.5
Haze_26951 Corylus avellana HOM05D006266 ORTHO05D008016 1.6e-18 96.7 127 41.7
Haze_26227 Corylus avellana HOM05D006266 ORTHO05D008016 1.9e-16 89.7 126 39.7
unitig_52.g17681 Utricularia gibba HOM05D006266 ORTHO05D008016 3.4e-13 79.0 125 37.6
Lsat_1_v5_gn_7_84681 Lactuca sativa HOM05D006266 ORTHO05D004407 2.7e-10 69.3 62 54.8
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 2.0e-08 63.2 33 78.8


User provided reference genes

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