Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026750 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 1.7e-33 145.2 64 100.0
CSS0006865 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 3.8e-33 144.1 64 98.4
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 3.7e-12 74.3 33 87.9
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 3.7e-12 74.3 33 87.9
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 3.7e-12 74.3 33 87.9
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 3.7e-12 74.3 33 87.9
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 4.9e-12 73.9 33 84.8
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 6.4e-12 73.6 33 84.8
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 8.3e-12 73.2 33 84.8
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 1.1e-11 72.8 33 87.9
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 1.4e-11 72.4 33 84.8
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 1.4e-11 72.4 33 81.8
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 1.9e-11 72.0 33 84.8
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.9e-11 72.0 32 87.5
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 1.9e-11 72.0 33 84.8
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 2.4e-11 71.6 33 84.8
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 2.4e-11 71.6 33 81.8
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 2.4e-11 71.6 33 84.8
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 2.4e-11 71.6 32 84.4
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 3.2e-11 71.2 33 84.8
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 3.2e-11 71.2 33 81.8
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 3.2e-11 71.2 33 84.8
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 4.1e-11 70.9 33 81.8
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 7.0e-11 70.1 33 81.8
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 9.2e-11 69.7 33 81.8
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 9.2e-11 69.7 33 81.8
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 9.2e-11 69.7 33 81.8
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.2e-10 69.3 33 81.8
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 1.2e-10 69.3 33 81.8
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.2e-10 69.3 33 81.8
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.2e-10 69.3 33 81.8
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 1.2e-10 69.3 33 78.8
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 2.0e-10 68.6 31 87.1
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 2.0e-10 68.6 33 78.8
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 2.0e-10 68.6 33 78.8
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 2.7e-10 68.2 31 83.9
Gohir.D08G087900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 3.5e-10 67.8 34 76.5
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 4.6e-10 67.4 33 78.8
Gohir.A10G061300 Gossypium hirsutum HOM05D003537 ORTHO05D004180 4.6e-10 67.4 33 78.8
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 4.6e-10 67.4 31 83.9
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 6.0e-10 67.0 51 60.8
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 6.0e-10 67.0 31 83.9
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 6.0e-10 67.0 31 83.9
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 7.8e-10 66.6 33 72.7
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 7.8e-10 66.6 31 83.9
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 7.8e-10 66.6 33 75.8
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 7.8e-10 66.6 33 78.8
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 1.0e-09 66.2 50 58.0
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 1.0e-09 66.2 31 83.9
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 1.3e-09 65.9 33 78.8
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 1.7e-09 65.5 31 83.9
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 1.7e-09 65.5 33 69.7
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 1.7e-09 65.5 43 62.8
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 1.7e-09 65.5 33 78.8
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 1.7e-09 65.5 51 56.9
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 1.7e-09 65.5 34 76.5
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 2.3e-09 65.1 45 62.2
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 3.9e-09 64.3 45 62.2
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 3.9e-09 64.3 31 77.4
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 3.9e-09 64.3 64 50.0
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 5.0e-09 63.9 33 72.7
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 6.6e-09 63.5 45 60.0
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 6.6e-09 63.5 45 57.8
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 6.6e-09 63.5 45 57.8
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 8.6e-09 63.2 43 62.8
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 8.6e-09 63.2 44 61.4
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 8.6e-09 63.2 44 61.4
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 1.1e-08 62.8 33 69.7
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.1e-08 62.8 32 75.0
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 1.1e-08 62.8 32 75.0
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 1.1e-08 62.8 43 60.5
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 1.5e-08 62.4 43 60.5
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 1.5e-08 62.4 33 75.8
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 1.9e-08 62.0 32 68.8
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 1.9e-08 62.0 43 60.5
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 1.9e-08 62.0 43 60.5
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 1.9e-08 62.0 43 60.5
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.9e-08 62.0 33 75.8
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 1.9e-08 62.0 32 75.0
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 1.9e-08 62.0 75 42.7
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.9e-08 62.0 43 60.5
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 2.5e-08 61.6 30 73.3
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 2.5e-08 61.6 30 73.3
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 2.5e-08 61.6 32 75.0
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 2.5e-08 61.6 45 60.0
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 2.5e-08 61.6 43 55.8
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 2.5e-08 61.6 43 60.5
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 3.3e-08 61.2 31 74.2
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 4.3e-08 60.8 43 60.5
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 4.3e-08 60.8 70 40.0
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 4.3e-08 60.8 31 77.4
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 4.3e-08 60.8 31 77.4
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 4.3e-08 60.8 30 70.0
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 4.3e-08 60.8 32 75.0
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 5.6e-08 60.5 32 71.9
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 5.6e-08 60.5 32 71.9
Gohir.A10G065840 Gossypium hirsutum HOM05D003537 ORTHO05D004180 5.6e-08 60.5 34 73.5
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 5.6e-08 60.5 42 61.9
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 7.3e-08 60.1 48 56.2
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 7.3e-08 60.1 48 56.2
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 7.3e-08 60.1 48 56.2
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 7.3e-08 60.1 43 58.1
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 9.5e-08 59.7 31 67.7
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 9.5e-08 59.7 32 68.8
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 1.2e-07 59.3 43 55.8
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 1.2e-07 59.3 29 75.9
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 1.2e-07 59.3 33 69.7
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.6e-07 58.9 33 69.7
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 2.1e-07 58.5 49 53.1
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 2.8e-07 58.2 31 71.0
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 2.8e-07 58.2 31 71.0
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 3.6e-07 57.8 32 68.8
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 3.6e-07 57.8 41 61.0
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 4.7e-07 57.4 43 53.5
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 4.7e-07 57.4 31 67.7
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 6.2e-07 57.0 31 64.5
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 6.2e-07 57.0 31 64.5
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 6.2e-07 57.0 41 58.5
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 6.2e-07 57.0 33 63.6
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 6.2e-07 57.0 31 67.7
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 6.2e-07 57.0 31 67.7
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 8.1e-07 56.6 32 71.9
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 8.1e-07 56.6 41 58.5
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 8.1e-07 56.6 32 65.6
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 8.1e-07 56.6 41 58.5
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 1.1e-06 56.2 43 55.8
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 1.1e-06 56.2 41 58.5
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 1.4e-06 55.8 31 64.5
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 1.8e-06 55.5 32 65.6
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 2.3e-06 55.1 63 41.3
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 2.3e-06 55.1 32 62.5
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 3.1e-06 54.7 40 57.5
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 4.0e-06 54.3 41 56.1
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 4.0e-06 54.3 57 43.9
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 5.2e-06 53.9 42 52.4
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 5.2e-06 53.9 42 52.4
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 5.2e-06 53.9 42 52.4
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 5.2e-06 53.9 42 52.4
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 5.2e-06 53.9 42 54.8
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 6.8e-06 53.5 40 55.0
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 6.8e-06 53.5 42 54.8
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 6.8e-06 53.5 26 76.9
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 8.9e-06 53.1 26 73.1
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 8.9e-06 53.1 26 76.9


User provided reference genes

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