Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 7.8e-223 776.9 429 100.0
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 5.4e-208 727.6 429 94.9
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 3.5e-138 495.7 446 69.7
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 5.6e-136 488.4 426 68.8
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.2e-135 487.3 426 68.5
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 2.3e-134 483.0 654 52.3
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.2e-133 480.7 426 67.6
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 1.5e-133 480.3 441 66.2
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 1.2e-130 470.7 445 66.1
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 6.0e-130 468.4 473 62.6
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 1.3e-129 467.2 455 64.4
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 1.3e-129 467.2 457 63.2
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.7e-129 466.8 427 64.6
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.9e-128 463.4 451 64.3
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 2.5e-128 463.0 445 63.8
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 5.6e-128 461.8 444 64.6
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 4.7e-127 458.8 452 61.9
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 4.7e-127 458.8 454 62.1
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 8.0e-127 458.0 448 62.7
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.3e-126 456.4 452 61.1
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 3.1e-126 456.1 455 62.9
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.0e-125 453.4 427 63.7
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 1.7e-124 450.3 461 61.4
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 9.2e-123 444.5 434 63.1
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 1.9e-120 436.8 439 62.0
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 2.5e-120 436.4 443 62.8
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 3.3e-120 436.0 453 61.4
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 3.3e-120 436.0 444 61.7
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 4.3e-120 435.6 437 62.0
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 5.6e-120 435.3 434 62.0
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.2e-119 434.1 441 60.8
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 1.2e-119 434.1 454 60.6
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 1.4e-118 430.6 432 62.7
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 2.6e-117 426.4 431 61.9
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 4.4e-117 425.6 437 62.2
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 9.9e-117 424.5 446 61.0
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 3.7e-116 422.5 438 60.3
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 7.1e-115 418.3 418 62.4
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 1.2e-114 417.5 430 61.6
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 2.1e-114 416.8 416 62.7
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 3.5e-114 416.0 450 58.9
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 1.0e-113 414.5 456 60.3
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 1.7e-113 413.7 444 58.3
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 1.7e-113 413.7 469 58.0
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 3.9e-113 412.5 418 61.5
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 3.9e-113 412.5 421 61.0
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 5.1e-113 412.1 420 61.2
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 6.6e-113 411.8 446 58.7
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 2.5e-112 409.8 416 62.0
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 3.3e-112 409.5 349 69.1
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 4.3e-112 409.1 422 61.4
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 4.3e-112 409.1 431 59.9
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 2.8e-111 406.4 424 61.3
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 2.8e-111 406.4 424 61.3
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 2.8e-111 406.4 427 59.0
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 3.6e-111 406.0 445 58.7
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 6.2e-111 405.2 500 54.6
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 6.2e-111 405.2 435 60.2
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 1.1e-110 404.4 420 61.2
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 1.1e-110 404.4 427 58.8
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 2.6e-109 399.8 434 60.4
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 4.9e-108 395.6 418 59.6
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 1.4e-107 394.0 433 58.0
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.4e-107 394.0 405 61.2
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 2.4e-107 393.3 422 61.4
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 3.0e-105 386.3 443 56.7
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 5.1e-105 385.6 431 57.5
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 1.5e-104 384.0 419 58.7
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 4.3e-104 382.5 415 59.0
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 7.3e-104 381.7 411 59.9
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 1.3e-103 380.9 411 59.4
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 6.2e-103 378.6 413 57.9
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 9.0e-102 374.8 435 58.2
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 1.7e-100 370.5 428 55.8
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 2.9e-100 369.8 416 58.2
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 1.1e-99 367.9 421 55.3
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 1.1e-99 367.9 426 56.1
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 2.4e-99 366.7 449 55.2
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 2.4e-99 366.7 431 56.6
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 4.2e-99 365.9 420 56.7
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 6.0e-98 362.1 414 58.7
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 2.3e-97 360.1 431 56.1
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 6.6e-97 358.6 355 62.0
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 9.6e-96 354.8 411 55.7
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 1.6e-95 354.0 450 54.0
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 6.2e-95 352.1 513 47.6
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 2.4e-91 340.1 452 52.4
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 6.0e-90 335.5 461 51.6
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 5.6e-88 328.9 436 53.0
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 7.4e-88 328.6 440 51.8
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 9.6e-88 328.2 418 53.8
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 8.1e-87 325.1 427 49.4
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 6.9e-86 322.0 439 50.6
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.2e-85 321.2 425 51.8
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 7.6e-85 318.5 419 52.3
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.7e-84 317.4 461 49.5
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 1.3e-81 307.8 443 50.1
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 8.7e-81 305.1 418 48.6
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 8.4e-76 288.5 482 46.3
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 2.5e-75 287.0 249 69.5
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 2.3e-73 280.4 419 49.2
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 5.1e-73 279.3 449 47.4
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 2.4e-70 270.4 293 59.7
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 7.7e-69 265.4 268 59.0
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 6.5e-68 262.3 337 53.1
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 2.7e-66 256.9 221 68.3
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 1.2e-58 231.5 248 53.2
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.6e-53 213.8 298 51.0
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 1.3e-52 211.5 471 40.6
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 4.7e-50 203.0 317 43.2
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 1.1e-43 181.8 426 34.0
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 8.5e-36 155.6 264 40.2
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 5.2e-33 146.4 247 43.3
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.5e-32 144.8 171 56.1
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 5.5e-27 126.3 82 81.7
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 4.7e-26 123.2 356 35.4
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 2.6e-24 117.5 178 47.2
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 7.5e-24 115.9 178 46.6
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 3.7e-23 113.6 84 72.6
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 3.7e-23 113.6 84 72.6
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 1.2e-21 108.6 194 43.3
Actinidia03037 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.1e-19 102.1 166 46.4
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 2.0e-16 91.3 162 43.8
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 2.6e-16 90.9 91 58.2
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.3e-15 88.6 145 47.6
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 2.2e-15 87.8 284 31.0
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 1.5e-11 75.1 237 33.3
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 1.9e-11 74.7 50 76.0
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.9e-07 60.8 158 34.8
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 3.2e-06 57.4 113 43.4
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 7.1e-06 56.2 180 35.6


User provided reference genes

Program Settings