Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026740 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 3.5e-28 127.5 60 100.0
Ah.07g208390 Amaranthus hybridus HOM05D004107 ORTHO05D004738 1.6e-20 102.1 73 71.2
CSS0040304 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 3.5e-20 100.9 73 72.6
Sed0003265 Sechium edule HOM05D004107 ORTHO05D004738 3.5e-20 100.9 73 72.6
EL10Ac3g05771 Beta vulgaris HOM05D004107 ORTHO05D004738 4.6e-20 100.5 73 71.2
COL.COLO4_31757 Corchorus olitorius HOM05D004107 ORTHO05D004738 4.6e-20 100.5 73 71.2
Duzib192G0236 Durio zibethinus HOM05D004107 ORTHO05D004738 4.6e-20 100.5 73 71.2
Gohir.A05G169500 Gossypium hirsutum HOM05D004107 ORTHO05D004738 4.6e-20 100.5 73 71.2
Gorai.009G177900 Gossypium raimondii HOM05D004107 ORTHO05D004738 4.6e-20 100.5 73 71.2
Thecc.06G087700 Theobroma cacao HOM05D004107 ORTHO05D004738 4.6e-20 100.5 73 71.2
Thecc.06G219000 Theobroma cacao HOM05D004107 ORTHO05D004738 4.6e-20 100.5 73 71.2
CANSAT56G3413 Cannabis sativa HOM05D004107 ORTHO05D004738 7.8e-20 99.8 73 71.2
ClCG03G004800 Citrullus lanatus HOM05D004107 ORTHO05D004738 7.8e-20 99.8 73 71.2
MELO3C002463.2 Cucumis melo HOM05D004107 ORTHO05D004738 7.8e-20 99.8 73 71.2
CsaV3_1G010840 Cucumis sativus L. HOM05D004107 ORTHO05D004738 7.8e-20 99.8 73 71.2
Hma1.2p1_0558F.1_g178480 Hydrangea macrophylla HOM05D004107 ORTHO05D004738 7.8e-20 99.8 73 71.2
Medtr7g030030 Medicago truncatula HOM05D004107 ORTHO05D004738 7.8e-20 99.8 73 71.2
Medtr7g038720 Medicago truncatula HOM05D004107 ORTHO05D004738 7.8e-20 99.8 73 71.2
Cpa.g.sc198.44 Carica papaya HOM05D004107 ORTHO05D004738 1.0e-19 99.4 73 69.9
Ciclev10014785m.g Citrus clementina HOM05D004107 ORTHO05D004738 1.0e-19 99.4 73 69.9
Peaxi162Scf00079g01510 Petunia axillaris HOM05D004107 ORTHO05D004738 1.0e-19 99.4 72 70.8
Psat3g165680 Pisum sativum HOM05D004107 ORTHO05D004738 1.0e-19 99.4 73 69.9
Sed0011656 Sechium edule HOM05D004107 ORTHO05D004738 1.0e-19 99.4 73 71.2
TAR627G0615 Trochodendron aralioides HOM05D004107 ORTHO05D004738 1.0e-19 99.4 73 69.9
CSS0008972 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 1.3e-19 99.0 76 68.4
AUR62012688 Chenopodium quinoa HOM05D004107 ORTHO05D004738 1.3e-19 99.0 73 69.9
AUR62021968 Chenopodium quinoa HOM05D004107 ORTHO05D004738 1.3e-19 99.0 73 69.9
Gohir.D05G172700 Gossypium hirsutum HOM05D004107 ORTHO05D004738 1.3e-19 99.0 73 69.9
Atru.chr10.2206 Acer truncatum HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
arahy.Tifrunner.gnm1.ann1.1W8BNJ Arachis hypogaea HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
arahy.Tifrunner.gnm1.ann1.G9MXMR Arachis hypogaea HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
CiPaw.03G033800 Carya illinoinensis HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
CiPaw.04G022400 Carya illinoinensis HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
Ca_09479_v3 Cicer arietinum L. HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
Dinv13883 Davidia involucrata HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
Glyma.13G163700 Glycine max HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
Glyma.17G107200 Glycine max HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
Lj5g0005763 Lotus japonicus HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
Lalb_Chr23g0269471 Lupinus albus HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
Medtr8g019500 Medicago truncatula HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
Phvul.003G172700 Phaseolus vulgaris HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
Hund21401 Selenicereus undatus HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
TPR.G39070 Trifolium pratense HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
VMungo0251G0494 Vigna mungo HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
GSVIVG01012742001 Vitis vinifera HOM05D004107 ORTHO05D004738 1.7e-19 98.6 73 69.9
Actinidia11849 Actinidia chinensis HOM05D004107 ORTHO05D004738 2.3e-19 98.2 72 70.8
AL6G48260 Arabidopsis lyrata HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
AT4G04770 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
BcaB01g01836 Brassica carinata HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
BcaC04g21323 Brassica carinata HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
A09p26110 Brassica napus HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
C09p33150 Brassica napus HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
BolC9t56149H Brassica oleracea HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
BraA09t38178Z Brassica rapa HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
Carub.0006s3269 Capsella rubella HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
CARHR252770 Cardamine hirsuta HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
Cfa007474 Carpinus fangiana HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
Haze_14623 Corylus avellana HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
Thhalv10028516m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
Lalb_Chr11g0064371 Lupinus albus HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
Nitab4.5_0003254g0100 Nicotiana tabacum HOM05D004107 ORTHO05D004738 2.3e-19 98.2 72 70.8
Nitab4.5_0006137g0030 Nicotiana tabacum HOM05D004107 ORTHO05D004738 2.3e-19 98.2 72 70.8
Potri.004G016900 Populus trichocarpa HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
QL02p078433 Quercus lobata HOM05D004107 ORTHO05D004738 2.3e-19 98.2 72 69.4
Rhsim02G0109300 Rhododendron simsii HOM05D004107 ORTHO05D004738 2.3e-19 98.2 72 70.8
Rhsim02G0109900 Rhododendron simsii HOM05D004107 ORTHO05D004738 2.3e-19 98.2 72 70.8
Sabra04G0009200 Salix brachista HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
SalBow8G0975 Salvia bowleyana HOM05D004107 ORTHO05D004738 2.3e-19 98.2 72 70.8
Sp6g04170 Schrenkiella parvula HOM05D004107 ORTHO05D004738 2.3e-19 98.2 73 68.5
Solyc02g080440.3 Solanum lycopersicum HOM05D004107 ORTHO05D004738 2.3e-19 98.2 72 70.8
Sopen02g025130 Solanum pennellii HOM05D004107 ORTHO05D004738 2.3e-19 98.2 72 70.8
PGSC0003DMG400016484 Solanum tuberosum HOM05D004107 ORTHO05D004738 2.3e-19 98.2 72 70.8
Eucgr.E04076 Eucalyptus grandis HOM05D004107 ORTHO05D004738 3.0e-19 97.8 73 69.9
Manes.16G008200 Manihot esculenta HOM05D004107 ORTHO05D004738 3.0e-19 97.8 73 68.5
Aa31LG9G9700 Aethionema arabicum HOM05D004107 ORTHO05D004738 3.9e-19 97.4 73 68.5
Peaxi162Scf00853g00314 Petunia axillaris HOM05D004107 ORTHO05D004738 3.9e-19 97.4 72 69.4
vmacro15813 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 3.9e-19 97.4 74 67.6
MSTRG.7222 Avicennia marina HOM05D004107 ORTHO05D004738 5.0e-19 97.1 72 69.4
CAN.G569.15 Capsicum annuum HOM05D004107 ORTHO05D004738 5.0e-19 97.1 72 69.4
DCAR_008142 Daucus carota HOM05D004107 ORTHO05D004738 5.0e-19 97.1 72 69.4
ECA248G0760 Erigeron canadensis HOM05D004107 ORTHO05D004738 5.0e-19 97.1 72 70.8
Migut.M01308 Erythranthe guttata HOM05D004107 ORTHO05D004738 5.0e-19 97.1 72 69.4
HanXRQChr01g0004241 Helianthus annuus HOM05D004107 ORTHO05D004738 5.0e-19 97.1 72 70.8
Nitab4.5_0003343g0020 Nicotiana tabacum HOM05D004107 ORTHO05D004738 5.0e-19 97.1 72 69.4
Nitab4.5_0009691g0010 Nicotiana tabacum HOM05D004107 ORTHO05D004738 5.0e-19 97.1 72 69.4
Oeu033892.1 Olea europaea HOM05D004107 ORTHO05D004738 5.0e-19 97.1 72 69.4
Solyc03g031700.4 Solanum lycopersicum HOM05D004107 ORTHO05D004738 5.0e-19 97.1 72 69.4
Sopen03g005570 Solanum pennellii HOM05D004107 ORTHO05D004738 5.0e-19 97.1 72 69.4
TAR629G1093 Trochodendron aralioides HOM05D004107 ORTHO05D004738 5.0e-19 97.1 73 68.5
vmacro10117 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 5.0e-19 97.1 72 69.4
Cc01_g06630 Coffea canephora HOM05D004107 ORTHO05D004738 6.6e-19 96.7 72 69.4
Lsat_1_v5_gn_1_128700 Lactuca sativa HOM05D004107 ORTHO05D004738 8.6e-19 96.3 72 69.4
unitig_748.g7575 Utricularia gibba HOM05D004107 ORTHO05D004738 8.6e-19 96.3 72 68.1
PGR042G1667 Punica granatum HOM05D004107 ORTHO05D004738 1.1e-18 95.9 73 67.1
PGSC0003DMG400005080 Solanum tuberosum HOM05D004107 ORTHO05D004738 1.1e-18 95.9 72 68.1
Lj1A1229G40 Lonicera japonica HOM05D004107 ORTHO05D004738 1.5e-18 95.5 73 68.5
Oeu002728.1 Olea europaea HOM05D004107 ORTHO05D004738 1.5e-18 95.5 72 68.1
Prupe.4G022500 Prunus persica HOM05D004107 ORTHO05D004738 1.9e-18 95.1 73 67.1
AT5G44316 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 2.5e-18 94.7 73 65.8
VMungo1215G1910 Vigna mungo HOM05D000103 ORTHO05D000049 2.5e-18 94.7 71 67.6
MBI02_g22110_MAGBIO Magnolia biondii HOM05D004107 ORTHO05D004738 3.3e-18 94.4 73 68.5
Aqoxy1G02185 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 4.3e-18 94.0 72 66.7
THA.LOC104813092 Tarenaya hassleriana HOM05D004107 ORTHO05D004738 4.3e-18 94.0 73 65.8
MSTRG.15982 Avicennia marina HOM05D004107 ORTHO05D004738 5.6e-18 93.6 72 68.1
Nn004s41401 Nelumbo nucifera HOM05D000561 ORTHO05D000514 5.6e-18 93.6 72 66.7
Sc05g0009110 Simmondsia chinensis HOM05D004107 ORTHO05D004738 5.6e-18 93.6 73 65.8
MD05G1344000 Malus domestica HOM05D004107 ORTHO05D004738 7.3e-18 93.2 73 65.8
TWI63G0549 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 7.3e-18 93.2 73 64.4
CARHR107510 Cardamine hirsuta HOM05D004107 ORTHO05D004738 1.2e-17 92.4 73 64.4
CBR_g37549 Chara braunii HOM05D004107 ORTHO05D004738 2.8e-17 91.3 73 65.8
Mapoly0043s0049 Marchantia polymorpha HOM05D004107 ORTHO05D004738 2.8e-17 91.3 73 65.8
SEGI_39818 Sequoiadendron giganteum HOM05D004107 ORTHO05D004738 2.8e-17 91.3 73 65.8
ATR0772G029 Amborella trichopoda HOM05D004107 ORTHO05D004738 3.6e-17 90.9 73 65.8
TWI38G1857 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 4.7e-17 90.5 73 63.0
HanXRQChr11g0323581 Helianthus annuus HOM05D004107 ORTHO05D004738 6.2e-17 90.1 72 66.7
FvH4_3g02300 Fragaria vesca HOM05D004107 ORTHO05D004738 8.1e-17 89.7 73 63.0
FAN25G2291 Fragaria x ananassa HOM05D004107 ORTHO05D004738 8.1e-17 89.7 73 63.0
RcHm_v2.0_Chr5g0003451 Rosa chinensis HOM05D004107 ORTHO05D004738 8.1e-17 89.7 73 63.0
RcHm_v2.0_Chr5g0003481 Rosa chinensis HOM05D004107 ORTHO05D004738 8.1e-17 89.7 73 63.0
CDE07G0300 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 1.4e-16 89.0 73 60.3
RcHm_v2.0_Chr5g0003431 Rosa chinensis HOM05D004107 ORTHO05D004738 1.4e-16 89.0 75 60.0
Pp3c1_9330 Physcomitrium patens HOM05D004107 ORTHO05D004738 1.8e-16 88.6 73 64.4
Pp3c2_37190 Physcomitrium patens HOM05D004107 ORTHO05D004738 1.8e-16 88.6 73 64.4
CDE06G1524 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 3.1e-16 87.8 73 58.9
MCO07G339 Micromonas commoda HOM05D004107 ORTHO05D004738 3.1e-16 87.8 73 63.0
SMO118G0281 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 3.1e-16 87.8 72 63.9
Cre15.g643600 Chlamydomonas reinhardtii HOM05D004107 ORTHO05D004738 1.5e-15 85.5 73 60.3
AagrBONN_evm.TU.Sc2ySwM_344.3731 Anthoceros agrestis HOM05D004107 ORTHO05D004738 3.4e-15 84.3 73 58.9
PSO541G4368 Papaver somniferum HOM05D004107 ORTHO05D004738 2.2e-14 81.6 73 56.2
PSO675G6282 Papaver somniferum HOM05D004107 ORTHO05D004738 2.2e-14 81.6 73 56.2
Psat0s2739g0120 Pisum sativum HOM05D004107 ORTHO05D004738 1.1e-13 79.3 72 56.9
PRCOL_00000395 Prasinoderma coloniale HOM05D004107 ORTHO05D004738 1.1e-13 79.3 73 56.2
Rhsim04G0103400 Rhododendron simsii HOM05D004107 ORTHO05D004738 1.1e-13 79.3 73 54.8
BcaB05g23711 Brassica carinata HOM05D004107 ORTHO05D004738 1.9e-13 78.6 59 66.1
A02p25270 Brassica napus HOM05D004107 ORTHO05D004738 5.4e-13 77.0 76 53.9
vmacro09067 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 5.4e-13 77.0 75 53.3
VMungo1215G1998 Vigna mungo HOM05D004107 ORTHO05D004738 7.1e-13 76.6 69 56.5
SHI00520 Sapria himalayana HOM05D004107 ORTHO05D004738 9.2e-13 76.3 73 54.8
C02p40090 Brassica napus HOM05D004107 ORTHO05D004738 1.6e-12 75.5 73 54.8
BolC2t10037H Brassica oleracea HOM05D004107 ORTHO05D004738 2.1e-12 75.1 73 54.8
Hund23481 Selenicereus undatus HOM05D004107 ORTHO05D004738 3.0e-11 71.2 67 59.7
BraA02t07514Z Brassica rapa HOM05D004107 ORTHO05D004738 6.6e-11 70.1 74 47.3
Os01g0830000 Oryza sativa ssp. japonica HOM05D004107 ORTHO05D004738 6.6e-11 70.1 69 55.1
EL10Ac8g18634 Beta vulgaris HOM05D004107 ORTHO05D004738 1.5e-10 68.9 72 51.4
PSO339G3293 Papaver somniferum HOM05D004107 ORTHO05D004738 2.5e-10 68.2 71 50.7
Atru.chr8.686 Acer truncatum HOM05D004107 ORTHO05D004738 2.1e-09 65.1 55 56.4
Psat0s2739g0040 Pisum sativum HOM05D004107 ORTHO05D004738 6.2e-09 63.5 62 51.6
Duzib211G0221 Durio zibethinus HOM05D004107 ORTHO05D004738 8.1e-09 63.2 71 43.7
Aqoxy1G02187 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.8e-08 62.0 72 47.2
SMO347G0487 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 5.2e-08 60.5 72 41.7
Thhalv10022515m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 6.8e-08 60.1 62 51.6
RcHm_v2.0_Chr1g0332851 Rosa chinensis HOM05D004107 ORTHO05D004738 8.9e-08 59.7 58 51.7
RcHm_v2.0_Chr6g0297111 Rosa chinensis HOM05D004107 ORTHO05D004738 8.9e-08 59.7 58 51.7
Actinidia04354 Actinidia chinensis HOM05D004107 ORTHO05D004738 1.2e-07 59.3 74 45.9
Haze_26807 Corylus avellana HOM05D004107 ORTHO05D004738 1.3e-06 55.8 72 41.7
VMungo1383G1914 Vigna mungo HOM05D004107 ORTHO05D004738 1.3e-06 55.8 29 82.8


User provided reference genes

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