Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 4.8e-171 604.4 295 100.0
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.2e-137 493.4 296 82.4
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 9.4e-135 483.8 290 81.0
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 8.0e-134 480.7 296 80.4
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 2.3e-133 479.2 295 79.0
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 4.2e-127 458.4 293 76.5
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.7e-121 439.1 288 75.3
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 5.9e-121 438.0 290 74.5
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 1.3e-120 436.8 291 76.3
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 3.3e-119 432.2 290 74.5
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 1.6e-118 429.9 289 73.0
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.6e-118 428.7 289 73.0
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 1.4e-117 426.8 289 73.4
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 2.3e-117 426.0 289 74.4
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 3.0e-117 425.6 289 72.7
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 5.7e-116 421.4 297 70.0
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 7.5e-116 421.0 289 72.3
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.8e-115 419.1 290 72.8
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 8.3e-115 417.5 284 71.8
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 1.1e-114 417.2 291 69.8
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 1.4e-114 416.8 298 71.5
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 5.4e-114 414.8 289 71.6
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 5.4e-114 414.8 294 70.1
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 1.2e-113 413.7 288 70.5
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 1.6e-113 413.3 288 69.1
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 5.9e-113 411.4 291 69.1
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 2.3e-112 409.5 295 70.2
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 3.8e-112 408.7 274 72.6
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 8.6e-112 407.5 279 72.0
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 1.1e-111 407.1 295 67.8
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 2.5e-111 406.0 290 70.0
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 3.3e-111 405.6 281 70.1
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 4.3e-111 405.2 229 83.0
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 1.2e-110 403.7 286 68.5
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.2e-110 403.7 287 70.7
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.6e-110 403.3 302 67.2
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.6e-110 403.3 276 70.7
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 2.8e-110 402.5 274 72.3
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 1.0e-109 400.6 296 68.9
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 1.0e-109 400.6 298 68.1
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.4e-109 400.2 280 69.6
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 1.4e-109 400.2 297 68.0
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 1.8e-109 399.8 297 69.0
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 5.2e-109 398.3 287 67.2
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 6.8e-109 397.9 283 67.8
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 1.2e-108 397.1 295 67.8
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 1.3e-107 393.7 286 68.5
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 1.7e-107 393.3 287 65.9
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.7e-107 393.3 282 66.3
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 2.9e-107 392.5 290 68.6
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 6.4e-107 391.3 289 67.1
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 1.1e-106 390.6 282 67.4
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 3.2e-106 389.0 294 66.0
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 5.4e-106 388.3 284 69.0
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 5.4e-106 388.3 288 68.8
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 9.2e-106 387.5 241 76.3
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 9.2e-106 387.5 280 67.1
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 9.2e-106 387.5 295 65.1
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 9.2e-106 387.5 285 66.7
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.6e-105 385.2 296 63.9
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 4.6e-105 385.2 284 66.9
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 4.6e-105 385.2 280 68.2
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 6.0e-105 384.8 280 67.1
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 1.3e-104 383.6 287 65.5
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.3e-104 383.6 296 63.9
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.1e-103 380.6 286 67.5
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 2.5e-103 379.4 284 68.3
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 3.3e-103 379.0 272 70.6
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 7.3e-103 377.9 259 71.0
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.6e-102 376.7 296 63.2
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 1.6e-102 376.7 280 66.1
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 2.1e-102 376.3 276 65.9
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 2.8e-102 375.9 287 65.2
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 6.2e-102 374.8 271 67.9
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 1.4e-101 373.6 299 62.9
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 1.8e-101 373.2 245 71.4
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 1.5e-100 370.2 277 65.7
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 1.7e-99 366.7 276 66.3
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 6.4e-99 364.8 259 68.0
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 4.1e-98 362.1 313 60.1
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 1.2e-97 360.5 272 64.3
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.3e-96 357.1 245 70.6
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 3.6e-94 349.0 287 62.4
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 1.5e-92 343.6 276 60.5
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 2.6e-92 342.8 260 62.3
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 3.4e-92 342.4 294 61.6
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 8.3e-91 337.8 277 62.5
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 9.2e-90 334.3 251 62.9
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 3.0e-88 329.3 282 58.5
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 3.0e-88 329.3 273 61.9
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 6.2e-86 321.6 241 67.2
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 2.1e-81 306.6 265 60.4
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 4.4e-76 288.9 277 49.8
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 2.4e-74 283.1 268 54.1
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 9.3e-74 281.2 265 52.8
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.0e-72 277.7 267 51.7
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 6.6e-72 275.0 265 51.3
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 8.7e-72 274.6 249 54.2
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 1.9e-71 273.5 267 51.7
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 1.9e-71 273.5 267 51.7
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 2.5e-71 273.1 251 53.4
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 3.3e-71 272.7 268 57.8
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 5.6e-71 271.9 266 50.8
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 7.3e-71 271.6 258 51.6
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 9.6e-71 271.2 274 51.5
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 1.3e-70 270.8 255 52.5
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 2.1e-70 270.0 275 51.6
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 2.8e-70 269.6 278 50.7
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 4.8e-70 268.9 267 50.9
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 1.1e-69 267.7 250 51.6
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 9.0e-69 264.6 266 50.0
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 2.0e-68 263.5 270 49.6
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 4.2e-66 255.8 273 49.1
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 5.4e-66 255.4 277 52.7
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 7.6e-60 235.0 289 42.2
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.4e-50 204.1 244 43.4
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 1.8e-48 197.2 282 39.4
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 2.5e-47 193.4 248 44.4
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 7.4e-47 191.8 201 48.8
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.2e-44 184.5 222 44.6
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 4.5e-44 182.6 267 36.7
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 1.0e-40 171.4 213 46.9
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 2.2e-38 163.7 199 47.7
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 6.3e-38 162.2 276 40.2
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 2.4e-37 160.2 240 40.8
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 5.3e-37 159.1 204 46.6
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 5.3e-37 159.1 175 46.9
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 3.4e-36 156.4 240 40.0
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 4.5e-36 156.0 179 47.5
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 5.9e-36 155.6 243 40.3
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 2.2e-35 153.7 198 45.5
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 3.8e-35 152.9 204 46.6
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 1.9e-34 150.6 251 37.8
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 3.0e-32 143.3 143 50.3
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 9.7e-31 138.3 269 36.8
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 2.8e-30 136.7 209 41.6
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 5.3e-29 132.5 143 49.0
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.2e-28 131.3 140 45.0
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 2.6e-23 113.6 204 39.7
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 2.6e-23 113.6 204 39.7
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 9.7e-23 111.7 192 36.5
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 3.7e-22 109.8 173 35.8
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 1.3e-19 101.3 93 53.8
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 8.0e-17 92.0 64 60.9
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 8.0e-17 92.0 64 60.9
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 3.4e-15 86.7 68 60.3
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 9.7e-15 85.1 148 39.9
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 4.8e-14 82.8 100 46.0


User provided reference genes

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