Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026676 Camellia sinensis var. sinensis HOM05D006932 ORTHO05D009616 2.7e-29 131.3 66 100.0
Actinidia37937 Actinidia chinensis HOM05D006932 ORTHO05D009616 2.3e-12 75.1 42 85.7
Dinv31864 Davidia involucrata HOM05D006932 ORTHO05D009616 1.1e-11 72.8 42 85.7
TWI56G1403 Tripterygium wilfordii HOM05D006932 ORTHO05D009616 1.6e-10 68.9 42 78.6
GSVIVG01009938001 Vitis vinifera HOM05D006932 ORTHO05D009616 6.1e-10 67.0 42 76.2
Lj4C22G4 Lonicera japonica HOM05D006932 ORTHO05D009616 1.8e-09 65.5 42 78.6
TAR628G0089 Trochodendron aralioides HOM05D006932 ORTHO05D009616 3.1e-09 64.7 42 76.2
Duzib093G0008 Durio zibethinus HOM05D006932 ORTHO05D009616 4.4e-08 60.8 42 69.0
Phvul.009G009500 Phaseolus vulgaris HOM05D006932 ORTHO05D009616 4.4e-08 60.8 42 71.4
Ca_00838_v3 Cicer arietinum L. HOM05D006932 ORTHO05D009616 5.8e-08 60.5 46 63.0
Sp1g17820 Schrenkiella parvula HOM05D006932 ORTHO05D009616 5.8e-08 60.5 42 69.0
SalBow7G2156 Salvia bowleyana HOM05D006932 ORTHO05D009616 7.5e-08 60.1 42 69.0
AT1G20060 Arabidopsis thaliana HOM05D006932 ORTHO05D009616 9.8e-08 59.7 42 69.0
CARHR020530 Cardamine hirsuta HOM05D006932 ORTHO05D009616 9.8e-08 59.7 42 66.7
Thhalv10006798m.g Eutrema salsugineum HOM05D006932 ORTHO05D009616 9.8e-08 59.7 46 63.0
A07p16040 Brassica napus HOM05D006932 ORTHO05D009616 1.3e-07 59.3 42 66.7
BraA07t29332Z Brassica rapa HOM05D006932 ORTHO05D009616 1.3e-07 59.3 42 66.7
AL1G32860 Arabidopsis lyrata HOM05D006932 ORTHO05D009616 1.7e-07 58.9 42 66.7
BcaB03g14345 Brassica carinata HOM05D006932 ORTHO05D009616 1.7e-07 58.9 42 66.7
C07p23410 Brassica napus HOM05D006932 ORTHO05D009616 2.2e-07 58.5 42 66.7
COL.COLO4_26127 Corchorus olitorius HOM05D006932 ORTHO05D009616 2.2e-07 58.5 42 69.0
BcaB03g14335 Brassica carinata HOM05D006932 ORTHO05D009616 2.9e-07 58.2 42 66.7
Nn5g30750 Nelumbo nucifera HOM05D006932 ORTHO05D009616 2.9e-07 58.2 42 66.7
Solyc08g042030.3 Solanum lycopersicum HOM05D006932 ORTHO05D009616 3.7e-07 57.8 42 69.0
Sopen08g012470 Solanum pennellii HOM05D006932 ORTHO05D009616 3.7e-07 57.8 42 69.0
Gohir.A05G185600 Gossypium hirsutum HOM05D006932 ORTHO05D009616 4.9e-07 57.4 42 69.0
Gohir.D05G188400 Gossypium hirsutum HOM05D006932 ORTHO05D009616 4.9e-07 57.4 42 69.0
Gorai.009G193700 Gossypium raimondii HOM05D006932 ORTHO05D009616 4.9e-07 57.4 42 69.0
Medtr3g113630 Medicago truncatula HOM05D006932 ORTHO05D009616 4.9e-07 57.4 42 64.3
Peaxi162Scf00553g00220 Petunia axillaris HOM05D006932 ORTHO05D009616 4.9e-07 57.4 42 69.0
Psat0s2878g0080 Pisum sativum HOM05D006932 ORTHO05D009616 4.9e-07 57.4 42 66.7
arahy.Tifrunner.gnm1.ann1.XXR9N9 Arachis hypogaea HOM05D006932 ORTHO05D009616 6.4e-07 57.0 42 66.7
arahy.Tifrunner.gnm1.ann1.Z8J4EM Arachis hypogaea HOM05D006932 ORTHO05D009616 6.4e-07 57.0 42 66.7
VMungo1309G1702 Vigna mungo HOM05D006932 ORTHO05D009616 8.3e-07 56.6 42 69.0
Lj1g0021590 Lotus japonicus HOM05D006932 ORTHO05D009616 1.1e-06 56.2 42 64.3
Carub.0001s1959 Capsella rubella HOM05D006932 ORTHO05D009616 1.4e-06 55.8 42 64.3
Manes.18G012000 Manihot esculenta HOM05D006932 ORTHO05D009616 1.4e-06 55.8 42 61.9
Thecc.08G046600 Theobroma cacao HOM05D006932 ORTHO05D009616 1.4e-06 55.8 42 66.7
TPR.G34552 Trifolium pratense HOM05D006932 ORTHO05D009616 1.4e-06 55.8 42 64.3
Aa31LG7G4500 Aethionema arabicum HOM05D006932 ORTHO05D009616 1.9e-06 55.5 44 61.4
Migut.C00855 Erythranthe guttata HOM05D006932 ORTHO05D009616 2.4e-06 55.1 42 66.7
Prupe.8G272100 Prunus persica HOM05D006932 ORTHO05D009616 2.4e-06 55.1 42 64.3
RcHm_v2.0_Chr6g0303131 Rosa chinensis HOM05D006932 ORTHO05D009616 2.4e-06 55.1 42 64.3
Glyma.06G023500 Glycine max HOM05D006932 ORTHO05D009616 3.2e-06 54.7 42 61.9
Prupe.1G363400 Prunus persica HOM05D006932 ORTHO05D009616 3.2e-06 54.7 42 66.7
CANSAT25G0116 Cannabis sativa HOM05D006932 ORTHO05D009616 4.1e-06 54.3 42 61.9
Aqoxy5G01813 Aquilegia oxysepala HOM05D006932 ORTHO05D009616 5.4e-06 53.9 42 64.3
CAN.G6.34 Capsicum annuum HOM05D006932 ORTHO05D009616 5.4e-06 53.9 43 67.4
CiPaw.07G147900 Carya illinoinensis HOM05D006932 ORTHO05D009616 5.4e-06 53.9 42 66.7
Nitab4.5_0003251g0090 Nicotiana tabacum HOM05D006932 ORTHO05D009616 5.4e-06 53.9 51 54.9
Lj6g0018015 Lotus japonicus HOM05D006932 ORTHO05D009616 7.0e-06 53.5 42 59.5
Cc10_g01490 Coffea canephora HOM05D006932 ORTHO05D009616 9.2e-06 53.1 42 64.3
ECA238G0815 Erigeron canadensis HOM05D006932 ORTHO05D009616 9.2e-06 53.1 42 61.9


User provided reference genes

Program Settings