Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 4499.1 2465 100.0
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 3828.5 2140 98.1
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 3155.5 2495 75.3
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 2686.4 2515 67.8
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 2671.0 2492 67.7
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2629.7 2533 64.2
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2578.9 2523 62.8
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2570.4 2554 62.6
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2499.5 2523 62.1
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2478.7 2534 61.6
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2460.6 2562 60.3
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2443.7 2545 60.8
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2436.8 2565 59.9
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 2412.9 2028 72.0
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2404.8 2523 60.0
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 2396.3 2519 59.1
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2387.1 2527 59.7
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 2377.1 2518 60.2
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 2373.6 2536 60.7
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 2312.7 2521 59.3
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 2304.2 2522 59.1
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2302.7 2527 58.8
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2299.6 2474 59.3
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 2295.0 2586 58.0
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 2291.9 2549 58.3
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 2291.2 2515 58.8
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2283.4 2529 57.7
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2271.9 2529 57.5
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2271.5 2523 58.4
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2263.8 2584 57.5
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2259.2 2591 57.4
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2254.2 2519 57.8
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2253.4 2533 57.4
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2250.7 2591 57.1
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 2250.7 2491 58.6
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2243.8 2510 58.6
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2241.5 2524 58.0
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 2240.7 2506 58.9
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 2216.8 2645 55.8
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2204.1 2531 57.0
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2197.9 2542 56.3
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2196.0 2530 56.4
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2195.6 2531 56.7
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2186.8 2514 56.7
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2163.3 2512 56.3
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2158.3 2519 57.3
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 2147.5 2516 55.8
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2145.5 2520 55.1
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 2136.3 2551 54.8
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 2128.6 2313 59.5
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 2128.6 2384 58.0
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2106.3 2529 55.4
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 2098.6 2516 54.9
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2093.5 2524 55.3
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 2087.0 2516 55.7
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 2087.0 2534 54.2
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2080.1 2523 54.9
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 2030.8 2519 55.0
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 2025.8 2509 54.1
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 2020.4 2512 53.5
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1997.2 2517 53.4
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1976.4 2523 53.3
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1975.3 2532 52.3
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1954.5 2539 52.6
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1951.0 2518 52.8
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1950.3 2533 54.1
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1926.8 2506 52.0
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1911.3 2516 52.4
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1899.8 2563 51.3
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1894.0 2596 48.8
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1886.7 2505 51.6
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1870.5 2526 51.9
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1867.4 2441 51.1
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1858.2 2513 51.8
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1851.3 2503 51.1
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1846.2 2513 51.7
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1827.8 2392 51.2
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1824.3 2520 51.2
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1813.5 2511 50.0
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1741.5 1888 58.4
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1729.1 2508 49.8
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1687.9 2540 49.5
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1654.8 2488 48.0
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1647.5 2559 48.7
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1632.1 2630 45.8
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1600.1 2495 48.3
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1579.3 2532 46.0
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1572.8 2635 45.1
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1530.4 2544 45.9
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1513.4 2491 46.4
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1512.3 2516 46.1
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1385.5 2552 43.7
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1370.5 2601 43.3
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1344.3 2508 44.3
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1337.8 1284 62.1
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1336.6 1761 51.7
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1328.2 2498 43.5
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1308.5 2485 42.5
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1300.0 2437 43.0
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1247.6 2435 42.5
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 1139.4 2401 39.4
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 0.0e+00 1131.3 1708 49.0
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 0.0e+00 1130.2 2394 40.8
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.7e-311 1074.7 945 71.1
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.8e-300 1037.3 717 80.3
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 5.4e-300 1035.8 968 61.5
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 2.4e-284 983.8 1057 59.0
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 2.3e-279 967.2 2541 38.7
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 5.1e-274 949.5 2719 37.3
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 1.5e-257 894.8 1031 59.9
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 1.1e-255 888.6 2430 37.1
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 2.5e-236 824.3 2431 36.0
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 2.5e-236 824.3 2431 36.0
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 2.7e-235 820.8 2455 36.3
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 5.1e-234 816.6 2453 36.1
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 1.6e-232 811.6 2469 35.6
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 6.9e-231 806.2 978 55.4
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 1.7e-200 705.3 570 71.9
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.9e-196 691.8 2557 32.7
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 8.8e-194 682.9 1946 36.7
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 9.1e-191 672.9 1817 34.2
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 3.6e-179 634.4 520 67.1
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 3.6e-163 581.3 456 69.3
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 3.7e-160 571.2 1329 41.4
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 8.9e-154 550.1 937 41.8
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.5e-148 531.9 687 53.4
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 8.4e-144 516.9 788 45.3
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 3.8e-128 464.9 1818 32.7
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 3.4e-121 441.8 2937 28.5
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 3.2e-111 408.7 1217 33.4
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 1.1e-95 357.1 976 34.4
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 3.7e-91 342.0 2846 29.0
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 6.3e-83 314.7 299 58.2
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.0e-65 256.5 2852 27.6
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 3.9e-64 252.3 506 41.5
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 5.0e-64 251.9 1046 33.2
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 1.4e-61 243.8 224 61.6
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 1.8e-61 243.4 558 36.9
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 4.1e-58 232.3 2775 28.1
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 2.2e-51 209.9 441 40.8
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 1.4e-50 207.2 271 53.1
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 1.2e-49 204.1 271 52.8
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 2.7e-49 203.0 553 33.1
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 8.6e-48 198.0 315 42.9
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.8e-45 190.3 265 49.4
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 1.2e-44 187.6 2423 24.9
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.7e-43 182.6 340 43.2
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 1.7e-35 157.1 213 46.5
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 1.6e-33 150.6 1154 26.9
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.7e-33 149.8 167 52.7
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 2.3e-24 120.2 317 33.4
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.8e-21 110.5 274 39.8
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 7.6e-20 105.1 164 44.5
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 1.6e-17 97.4 127 48.8
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 3.0e-16 93.2 72 65.3
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 3.0e-16 93.2 71 66.2
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 3.3e-15 89.7 128 46.9
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 1.5e-12 80.9 112 48.2
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 5.5e-10 72.4 85 49.4
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 9.3e-10 71.6 86 55.8
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 6.7e-08 65.5 58 55.2
Psat2g096600 Pisum sativum HOM05D004560 ORTHO05D005540 7.4e-07 62.0 94 45.7


User provided reference genes

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