Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 2.5e-93 345.5 182 100.0
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.2e-92 343.2 182 99.5
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 1.0e-62 243.8 195 71.8
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 5.0e-62 241.5 195 70.3
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 5.2e-59 231.5 191 68.1
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 1.2e-55 220.3 149 75.8
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 2.0e-55 219.5 169 69.8
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 3.5e-55 218.8 185 67.6
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 4.6e-55 218.4 150 73.3
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 5.0e-54 214.9 142 78.2
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 6.6e-54 214.5 139 77.7
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 1.1e-53 213.8 179 65.9
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 2.5e-53 212.6 155 70.3
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 4.3e-53 211.8 155 70.3
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 9.5e-53 210.7 142 76.8
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 9.5e-53 210.7 176 67.0
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 1.2e-52 210.3 172 67.4
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 1.6e-52 209.9 151 70.2
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 1.6e-52 209.9 136 76.5
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 3.6e-52 208.8 133 75.9
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 3.6e-52 208.8 130 81.5
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 4.7e-52 208.4 135 74.1
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 4.7e-52 208.4 174 64.4
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 6.2e-52 208.0 133 74.4
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 8.0e-52 207.6 151 69.5
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 8.0e-52 207.6 134 79.1
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 1.8e-51 206.5 147 73.5
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 2.3e-51 206.1 182 62.1
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 3.1e-51 205.7 133 75.2
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 3.1e-51 205.7 135 74.8
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 4.0e-51 205.3 153 68.6
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 1.2e-50 203.8 187 62.0
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 2.0e-50 203.0 190 62.1
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 2.0e-50 203.0 184 64.1
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 2.0e-50 203.0 153 68.0
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 2.6e-50 202.6 135 73.3
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 4.4e-50 201.8 183 63.4
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 5.8e-50 201.4 134 74.6
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 7.5e-50 201.1 135 75.6
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 9.8e-50 200.7 173 61.8
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 9.8e-50 200.7 189 61.9
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 1.3e-49 200.3 142 72.5
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 1.7e-49 199.9 136 75.0
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 1.7e-49 199.9 164 67.1
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 1.7e-49 199.9 182 63.7
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 1.7e-49 199.9 132 74.2
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 2.2e-49 199.5 192 57.8
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 2.2e-49 199.5 144 68.1
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 2.9e-49 199.1 190 61.6
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 3.7e-49 198.7 137 73.7
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 4.9e-49 198.4 126 77.0
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 6.4e-49 198.0 180 60.0
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 1.4e-48 196.8 155 65.8
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 1.4e-48 196.8 135 74.8
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 1.4e-48 196.8 155 65.8
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 1.4e-48 196.8 135 74.8
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 1.4e-48 196.8 154 65.6
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 1.4e-48 196.8 141 74.5
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 1.9e-48 196.4 170 63.5
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 2.4e-48 196.1 146 68.5
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 2.4e-48 196.1 146 68.5
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 2.4e-48 196.1 181 63.0
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 2.4e-48 196.1 180 62.8
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 3.2e-48 195.7 180 61.7
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 3.2e-48 195.7 187 57.8
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 7.0e-48 194.5 130 74.6
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 7.0e-48 194.5 143 69.2
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 9.2e-48 194.1 118 78.8
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 1.2e-47 193.7 134 74.6
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.2e-47 193.7 118 78.0
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 1.2e-47 193.7 172 62.2
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 1.2e-47 193.7 164 64.6
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 1.6e-47 193.4 150 69.3
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 2.7e-47 192.6 146 67.1
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 2.7e-47 192.6 135 74.1
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 6.0e-47 191.4 185 61.1
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 7.8e-47 191.0 133 71.4
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 1.7e-46 189.9 114 75.4
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 2.3e-46 189.5 140 67.9
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 5.0e-46 188.3 151 66.2
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 5.0e-46 188.3 196 58.2
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 5.0e-46 188.3 182 58.2
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 6.6e-46 188.0 149 66.4
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 8.6e-46 187.6 149 66.4
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 1.1e-45 187.2 162 63.0
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 1.5e-45 186.8 155 63.2
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.9e-45 186.4 151 65.6
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 1.9e-45 186.4 154 63.6
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 1.9e-45 186.4 189 58.7
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.3e-45 185.3 151 64.9
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 4.3e-45 185.3 151 64.9
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 2.1e-44 183.0 183 57.9
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 2.8e-44 182.6 137 68.6
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 6.2e-44 181.4 178 57.9
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 6.2e-44 181.4 164 67.7
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 6.8e-43 177.9 150 61.3
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 8.9e-43 177.6 182 56.0
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 1.2e-42 177.2 114 78.1
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 3.4e-42 175.6 153 63.4
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 9.8e-42 174.1 105 78.1
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 1.7e-41 173.3 135 63.7
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 1.1e-40 170.6 124 71.0
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 2.7e-39 166.0 132 66.7
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 1.0e-38 164.1 156 60.9
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 1.3e-38 163.7 171 56.7
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 3.0e-38 162.5 163 59.5
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 1.1e-37 160.6 153 60.1
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 2.5e-37 159.5 180 56.7
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 2.5e-37 159.5 115 70.4
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 1.2e-36 157.1 120 70.8
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 2.3e-35 152.9 132 62.1
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 4.0e-35 152.1 88 81.8
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 1.3e-33 147.1 110 66.4
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 7.1e-32 141.4 109 57.8
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 9.2e-32 141.0 142 54.9
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 1.3e-30 137.1 114 55.3
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 5.1e-30 135.2 119 54.6
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 1.6e-28 130.2 188 41.5
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 8.1e-28 127.9 124 52.4
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 3.8e-17 92.4 74 67.6
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 6.4e-17 91.7 121 41.3
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 1.6e-15 87.0 98 45.9
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 3.6e-12 75.9 63 63.5
Manes.01G158400 Manihot esculenta HOM05D006312 ORTHO05D007843 1.0e-06 57.8 65 53.8
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 1.0e-06 57.8 81 43.2


User provided reference genes

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