Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 4.4e-167 591.3 308 100.0
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 1.6e-164 582.8 308 99.4
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 7.3e-130 467.6 310 78.7
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 9.5e-130 467.2 302 82.1
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 1.2e-127 460.3 307 78.8
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 9.2e-117 424.1 306 72.9
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 2.5e-114 416.0 284 78.2
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 9.9e-111 404.1 298 72.5
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 1.2e-108 397.1 276 72.8
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 1.2e-108 397.1 309 67.3
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 1.0e-107 394.0 254 79.1
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 5.1e-107 391.7 257 77.4
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 4.3e-106 388.7 271 70.8
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 2.1e-105 386.3 273 70.7
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 2.8e-105 386.0 306 66.0
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 8.1e-105 384.4 304 68.1
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 1.1e-104 384.0 313 65.5
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 4.0e-104 382.1 301 68.1
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 4.0e-104 382.1 301 65.4
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 9.0e-104 380.9 284 69.4
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 2.0e-103 379.8 307 68.1
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 9.9e-103 377.5 301 67.4
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 1.3e-102 377.1 286 70.3
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 1.7e-102 376.7 276 69.6
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 1.7e-102 376.7 260 73.5
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 8.4e-102 374.4 356 60.1
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 2.4e-101 372.9 273 68.9
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.4e-101 372.9 273 68.9
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 3.2e-101 372.5 306 65.7
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 4.2e-101 372.1 297 67.3
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 5.4e-101 371.7 301 65.1
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 5.4e-101 371.7 303 65.0
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 7.1e-101 371.3 307 63.8
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 2.1e-100 369.8 303 65.3
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 4.6e-100 368.6 297 67.0
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 4.6e-100 368.6 260 71.9
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 6.0e-100 368.2 265 68.7
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 7.9e-100 367.9 269 69.5
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 1.0e-99 367.5 243 74.9
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 1.0e-99 367.5 250 73.2
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 2.3e-99 366.3 305 64.9
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 2.3e-99 366.3 304 64.1
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 3.9e-99 365.5 265 69.8
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 3.9e-99 365.5 294 67.0
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 5.1e-99 365.2 310 62.9
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 6.7e-99 364.8 291 67.0
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 8.7e-99 364.4 304 63.8
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 1.5e-98 363.6 312 63.1
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 9.6e-98 360.9 298 65.8
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 1.3e-97 360.5 304 65.8
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 4.0e-96 355.5 260 68.8
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 4.5e-95 352.1 261 67.0
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 2.2e-94 349.7 309 61.2
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 4.9e-94 348.6 299 62.9
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 2.4e-93 346.3 270 68.9
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 5.5e-93 345.1 358 56.1
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 7.1e-93 344.7 322 57.8
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 2.1e-92 343.2 266 65.4
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 6.0e-92 341.7 245 69.4
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 2.3e-91 339.7 265 65.7
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 3.9e-91 339.0 260 66.9
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 3.9e-91 339.0 273 64.1
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 5.1e-91 338.6 269 62.5
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 8.7e-91 337.8 302 60.3
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.1e-90 337.4 274 65.7
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 7.4e-90 334.7 314 60.5
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 1.6e-89 333.6 264 65.5
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 2.1e-89 333.2 318 61.0
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 1.8e-88 330.1 243 70.4
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 4.5e-87 325.5 309 57.0
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 1.0e-86 324.3 291 61.9
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 3.8e-86 322.4 261 60.9
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 3.8e-86 322.4 306 57.2
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 9.3e-85 317.8 304 58.2
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 2.1e-84 316.6 274 59.1
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 2.1e-84 316.6 274 59.1
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 2.1e-84 316.6 309 54.7
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 2.7e-84 316.2 275 61.8
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 1.8e-83 313.5 273 59.3
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 1.8e-83 313.5 295 55.9
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 1.8e-83 313.5 295 55.9
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 1.8e-83 313.5 309 55.7
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 8.7e-83 311.2 287 56.8
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 7.4e-82 308.1 274 58.4
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 9.0e-80 301.2 306 55.2
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 1.1e-77 294.3 306 55.6
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 9.4e-77 291.2 306 55.2
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 6.3e-73 278.5 199 68.8
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 1.1e-72 277.7 302 54.0
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 8.5e-70 268.1 210 64.8
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 1.1e-69 267.7 207 65.7
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 1.4e-69 267.3 266 53.0
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 3.6e-68 262.7 170 78.2
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 3.0e-67 259.6 233 57.5
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 4.8e-65 252.3 305 49.2
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 1.6e-60 237.3 211 64.5
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 5.7e-58 228.8 190 59.5
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 4.1e-56 222.6 158 67.7
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 8.5e-54 214.9 209 55.5
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 1.0e-51 208.0 239 45.2
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 2.8e-49 199.9 169 63.3
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 1.8e-40 170.6 136 61.0
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 1.3e-38 164.5 188 53.7
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 4.4e-34 149.4 146 53.4
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 3.9e-22 109.8 192 35.9
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 6.2e-20 102.4 246 32.5
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 8.3e-17 92.0 283 30.7
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 1.4e-16 91.3 102 47.1
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 4.7e-12 76.3 56 64.3
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 5.2e-11 72.8 56 60.7
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 8.9e-11 72.0 203 27.6
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 2.9e-09 67.0 260 26.5
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 6.4e-09 65.9 260 26.9
MSTRG.18452 Avicennia marina HOM05D006655 ORTHO05D007986 1.1e-08 65.1 245 26.9
HanXRQChr01g0023951 Helianthus annuus HOM05D006655 ORTHO05D007986 1.1e-08 65.1 265 24.5
Ciclev10015876m.g Citrus clementina HOM05D006655 ORTHO05D007986 1.4e-08 64.7 249 25.3
FvH4_3g28150 Fragaria vesca HOM05D006655 ORTHO05D007986 1.4e-08 64.7 245 25.7
FAN11G1204 Fragaria x ananassa HOM05D006655 ORTHO05D007986 1.4e-08 64.7 245 25.7
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 1.4e-08 64.7 277 24.2
ECA248G0748 Erigeron canadensis HOM05D006655 ORTHO05D007986 1.9e-08 64.3 257 24.9
EL10Ac4g10174 Beta vulgaris HOM05D006655 ORTHO05D007986 3.2e-08 63.5 245 26.1
RcHm_v2.0_Chr5g0050831 Rosa chinensis HOM05D006655 ORTHO05D007986 3.2e-08 63.5 275 23.3
Cpa.g.sc84.14 Carica papaya HOM05D006655 ORTHO05D007986 5.4e-08 62.8 269 23.4
FAN16G3233 Fragaria x ananassa HOM05D006655 ORTHO05D007986 5.4e-08 62.8 245 25.3
Thhalv10025684m.g Eutrema salsugineum HOM05D006655 ORTHO05D007986 7.1e-08 62.4 249 24.5
Actinidia06937 Actinidia chinensis HOM05D006655 ORTHO05D007986 9.2e-08 62.0 265 24.9
FAN21G0719 Fragaria x ananassa HOM05D006655 ORTHO05D007986 9.2e-08 62.0 245 25.3
AUR62000173 Chenopodium quinoa HOM05D006655 ORTHO05D007986 1.2e-07 61.6 249 25.3
CARHR239410 Cardamine hirsuta HOM05D006655 ORTHO05D007986 1.6e-07 61.2 249 24.9
Cc01_g05880 Coffea canephora HOM05D006655 ORTHO05D007986 1.6e-07 61.2 266 25.9
MBI13_g19379_MAGBIO Magnolia biondii HOM05D006655 ORTHO05D007986 1.6e-07 61.2 270 25.6
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 2.1e-07 60.8 54 44.4
unitig_90.g27460 Utricularia gibba HOM05D006655 ORTHO05D007986 2.1e-07 60.8 233 24.5
Zm00001eb394530 Zea mays HOM05D006655 ORTHO05D007986 2.1e-07 60.8 243 25.1
GSVIVG01037232001 Vitis vinifera HOM05D006655 ORTHO05D007986 3.5e-07 60.1 243 24.3
AT4G31530 Arabidopsis thaliana HOM05D006655 ORTHO05D007986 4.6e-07 59.7 265 24.2
Phvul.010G032900 Phaseolus vulgaris HOM05D006655 ORTHO05D007986 4.6e-07 59.7 247 23.9
arahy.Tifrunner.gnm1.ann1.760I9C Arachis hypogaea HOM05D006655 ORTHO05D007986 6.0e-07 59.3 243 23.5
BcaNung04132 Brassica carinata HOM05D006655 ORTHO05D007986 6.0e-07 59.3 249 24.1
C07p58710 Brassica napus HOM05D006655 ORTHO05D007986 6.0e-07 59.3 264 24.2
Aa31LG2G18820 Aethionema arabicum HOM05D006655 ORTHO05D007986 7.8e-07 58.9 245 24.1
AL7G20510 Arabidopsis lyrata HOM05D006655 ORTHO05D007986 7.8e-07 58.9 265 24.2
CiPaw.14G115600 Carya illinoinensis HOM05D006655 ORTHO05D007986 7.8e-07 58.9 272 22.8
AUR62039838 Chenopodium quinoa HOM05D006655 ORTHO05D007986 7.8e-07 58.9 264 24.2
Gohir.D09G107900 Gossypium hirsutum HOM05D006655 ORTHO05D007986 7.8e-07 58.9 243 23.5
Gorai.006G125600 Gossypium raimondii HOM05D006655 ORTHO05D007986 7.8e-07 58.9 243 23.5
ClCG03G012910 Citrullus lanatus HOM05D006655 ORTHO05D007986 1.0e-06 58.5 257 23.7
Glyma.16G082200 Glycine max HOM05D006655 ORTHO05D007986 1.0e-06 58.5 270 23.7
Lj3g0004618 Lotus japonicus HOM05D006655 ORTHO05D007986 1.0e-06 58.5 248 22.6
Rhsim13G0216500 Rhododendron simsii HOM05D006655 ORTHO05D007986 1.0e-06 58.5 261 24.5
Dinv36200 Davidia involucrata HOM05D006655 ORTHO05D007986 1.3e-06 58.2 268 24.6
Solyc01g008920.4 Solanum lycopersicum HOM05D006655 ORTHO05D007986 1.3e-06 58.2 246 24.0
Sopen01g004410 Solanum pennellii HOM05D006655 ORTHO05D007986 1.3e-06 58.2 246 24.0
BolC7t46320H Brassica oleracea HOM05D006655 ORTHO05D007986 1.7e-06 57.8 239 24.3
Cfa009833 Carpinus fangiana HOM05D006655 ORTHO05D007986 1.7e-06 57.8 279 22.2
Sabra16G0154600 Salix brachista HOM05D006655 ORTHO05D007986 1.7e-06 57.8 260 23.1
Sp7g29360 Schrenkiella parvula HOM05D006655 ORTHO05D007986 1.7e-06 57.8 249 23.7
VMungo0331G0819 Vigna mungo HOM05D006655 ORTHO05D007986 1.7e-06 57.8 270 23.0
MELO3C015152.2 Cucumis melo HOM05D006655 ORTHO05D007986 2.3e-06 57.4 261 23.4
SEGI_01007 Sequoiadendron giganteum HOM05D006655 ORTHO05D007986 2.3e-06 57.4 231 24.2
Carub.0007s0904 Capsella rubella HOM05D006655 ORTHO05D007986 3.0e-06 57.0 265 24.2
Haze_23196 Corylus avellana HOM05D006655 ORTHO05D007986 3.0e-06 57.0 279 22.6
SGA_v2.0_scaffold8G04557 Striga asiatica HOM05D006655 ORTHO05D007986 3.0e-06 57.0 268 24.3
CiPaw.09G194500 Carya illinoinensis HOM05D003730 ORTHO05D004458 5.1e-06 56.2 134 29.1
QL01p017764 Quercus lobata HOM05D006655 ORTHO05D007986 5.1e-06 56.2 255 22.4
THA.LOC104816930 Tarenaya hassleriana HOM05D006655 ORTHO05D007986 6.6e-06 55.8 275 24.0
CsaV3_1G043150 Cucumis sativus L. HOM05D006655 ORTHO05D007986 8.6e-06 55.5 255 23.1
PGR102G2275 Punica granatum HOM05D006655 ORTHO05D007986 8.6e-06 55.5 266 25.2


User provided reference genes

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