Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 6.8e-130 467.2 221 100.0
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 4.1e-50 202.2 140 67.9
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 3.5e-49 199.1 142 65.5
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.3e-48 197.2 149 61.7
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 5.0e-48 195.3 143 62.2
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 8.5e-48 194.5 142 64.1
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 1.5e-47 193.7 149 60.4
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 2.5e-47 193.0 147 60.5
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 4.2e-47 192.2 150 59.3
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 7.2e-47 191.4 140 62.9
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 1.2e-46 190.7 143 63.6
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 1.6e-46 190.3 142 61.3
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 2.1e-46 189.9 147 60.5
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.1e-46 189.9 139 64.0
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.1e-46 189.9 139 64.0
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.1e-46 189.9 140 61.4
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 3.6e-46 189.1 144 61.8
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 8.0e-46 188.0 140 65.0
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 1.4e-45 187.2 142 60.6
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 2.3e-45 186.4 142 64.8
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 3.0e-45 186.0 133 63.9
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 3.0e-45 186.0 140 61.4
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 8.8e-45 184.5 142 59.9
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 1.2e-44 184.1 142 60.6
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 1.2e-44 184.1 142 61.3
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 1.2e-44 184.1 139 61.9
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.5e-44 183.7 140 60.7
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.5e-44 183.7 157 57.3
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 1.5e-44 183.7 157 57.3
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.5e-44 183.7 147 57.1
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.5e-44 183.7 147 57.1
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 2.0e-44 183.3 146 56.8
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.6e-44 183.0 142 59.9
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 2.6e-44 183.0 146 58.2
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 3.4e-44 182.6 143 59.4
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.4e-44 182.6 143 59.4
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 4.4e-44 182.2 139 60.4
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 5.7e-44 181.8 143 60.8
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 5.7e-44 181.8 151 60.3
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 7.5e-44 181.4 140 60.0
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 7.5e-44 181.4 140 60.0
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 7.5e-44 181.4 145 60.0
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 9.8e-44 181.0 143 60.8
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 1.3e-43 180.6 151 55.6
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 1.3e-43 180.6 147 56.5
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.7e-43 180.3 140 59.3
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 1.7e-43 180.3 142 58.5
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.2e-43 179.9 144 59.0
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.8e-43 179.5 153 56.9
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 2.8e-43 179.5 145 55.9
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 2.8e-43 179.5 176 51.7
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 8.3e-43 177.9 141 56.7
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.3e-43 177.9 142 58.5
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.1e-42 177.6 141 57.4
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.1e-42 177.6 145 54.5
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 1.1e-42 177.6 145 54.5
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 1.1e-42 177.6 141 58.9
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 1.1e-42 177.6 141 58.2
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 1.8e-42 176.8 157 53.5
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 1.8e-42 176.8 158 53.8
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.8e-42 176.8 148 58.8
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 1.8e-42 176.8 148 58.8
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.8e-42 176.8 142 59.2
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 3.1e-42 176.0 150 56.0
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 4.1e-42 175.6 157 53.5
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 4.1e-42 175.6 147 54.4
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 7.0e-42 174.9 148 56.8
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 7.0e-42 174.9 139 61.2
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 7.0e-42 174.9 141 56.7
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 9.2e-42 174.5 139 58.3
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 9.2e-42 174.5 148 57.4
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 1.2e-41 174.1 144 53.5
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.2e-41 174.1 141 57.4
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 1.2e-41 174.1 141 59.6
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 1.6e-41 173.7 145 59.3
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 1.6e-41 173.7 144 58.3
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 2.7e-41 172.9 141 58.2
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 2.7e-41 172.9 152 53.9
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 3.5e-41 172.6 133 61.7
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 3.5e-41 172.6 143 56.6
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 5.9e-41 171.8 141 56.7
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.9e-41 171.8 149 55.7
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.9e-41 171.8 149 55.7
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 7.7e-41 171.4 146 56.2
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 1.0e-40 171.0 141 55.3
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 1.0e-40 171.0 143 56.6
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 1.3e-40 170.6 142 58.5
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 1.7e-40 170.2 142 57.0
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 1.7e-40 170.2 158 55.1
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 1.7e-40 170.2 147 56.5
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 1.7e-40 170.2 144 54.9
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 2.3e-40 169.9 143 57.3
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 2.9e-40 169.5 144 55.6
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 2.9e-40 169.5 142 57.0
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.9e-40 169.5 141 57.4
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 3.8e-40 169.1 142 57.0
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 5.0e-40 168.7 149 55.0
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 5.0e-40 168.7 137 59.9
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 6.6e-40 168.3 148 54.7
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 6.6e-40 168.3 148 54.7
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 6.6e-40 168.3 148 54.7
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 8.6e-40 167.9 144 55.6
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 1.5e-39 167.2 142 56.3
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 1.5e-39 167.2 144 53.5
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.5e-39 167.2 144 53.5
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.5e-39 167.2 144 53.5
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 1.9e-39 166.8 142 57.0
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 1.9e-39 166.8 150 54.7
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 2.5e-39 166.4 141 56.0
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 2.5e-39 166.4 142 56.3
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.5e-39 166.4 157 52.2
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 2.5e-39 166.4 149 55.0
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 2.5e-39 166.4 152 54.6
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 2.5e-39 166.4 143 53.8
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 3.3e-39 166.0 144 55.6
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 3.3e-39 166.0 150 53.3
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 4.3e-39 165.6 150 53.3
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 4.3e-39 165.6 148 53.4
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 4.3e-39 165.6 144 54.9
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 9.5e-39 164.5 146 54.1
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 1.2e-38 164.1 149 55.7
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 1.6e-38 163.7 141 53.9
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.6e-38 163.7 152 53.3
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 2.8e-38 162.9 154 55.8
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 4.7e-38 162.2 122 65.6
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 6.1e-38 161.8 143 55.2
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 6.1e-38 161.8 178 47.2
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 1.8e-37 160.2 149 55.0
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 3.0e-37 159.5 141 55.3
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 3.0e-37 159.5 150 54.7
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 1.2e-36 157.5 145 55.2
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 2.6e-36 156.4 147 55.8
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 7.5e-36 154.8 144 53.5
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 7.5e-36 154.8 139 54.0
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 1.7e-35 153.7 141 53.2
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 2.9e-35 152.9 147 50.3
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 3.7e-35 152.5 151 51.7
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 1.4e-34 150.6 147 54.4
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 2.4e-34 149.8 143 50.3
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 7.8e-33 144.8 136 47.1
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 3.9e-32 142.5 141 46.8
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 1.9e-31 140.2 117 58.1
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.6e-31 138.7 208 38.0
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 2.1e-30 136.7 152 48.0
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.3e-29 133.3 140 48.6
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 2.3e-29 133.3 102 59.8
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 4.0e-29 132.5 139 43.9
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 2.0e-28 130.2 151 43.7
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 2.0e-28 130.2 101 59.4
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 2.4e-26 123.2 157 42.7
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 5.4e-26 122.1 149 40.9
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 1.2e-25 120.9 131 51.9
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 1.3e-24 117.5 147 40.8
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 2.9e-19 99.8 79 60.8
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 4.9e-19 99.0 135 40.0
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 1.4e-18 97.4 147 36.1
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 7.8e-17 91.7 111 45.9
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 3.9e-16 89.4 70 61.4
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 3.9e-16 89.4 50 72.0
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 3.6e-14 82.8 110 42.7
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 4.7e-14 82.4 121 37.2
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 6.8e-13 78.6 72 54.2
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 2.0e-12 77.0 55 61.8
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 3.4e-12 76.3 58 69.0
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 9.9e-12 74.7 76 47.4
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 1.7e-11 73.9 45 64.4
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 1.6e-09 67.4 38 68.4
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 5.6e-07 58.9 69 47.8


User provided reference genes

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