Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.6e-52 208.4 99 100.0
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 1.0e-45 186.4 99 89.9
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 1.5e-44 182.6 99 87.9
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.0e-44 182.2 92 93.5
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 2.8e-43 178.3 99 86.9
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 2.8e-43 178.3 99 85.9
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 2.8e-43 178.3 118 76.3
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 2.8e-43 178.3 96 89.6
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 2.4e-42 175.3 99 85.9
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.4e-42 175.3 100 84.0
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 4.1e-42 174.5 97 85.6
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.2e-41 172.9 100 83.0
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 2.7e-41 171.8 93 87.1
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 2.7e-41 171.8 93 87.1
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 3.5e-41 171.4 100 83.0
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 3.5e-41 171.4 93 86.0
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 3.5e-41 171.4 93 86.0
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 3.5e-41 171.4 93 86.0
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 4.5e-41 171.0 92 85.9
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 4.5e-41 171.0 92 85.9
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 5.9e-41 170.6 99 79.8
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 7.7e-41 170.2 98 81.6
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 7.7e-41 170.2 99 80.8
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 2.3e-40 168.7 99 81.8
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 2.9e-40 168.3 91 84.6
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 8.6e-40 166.8 97 83.5
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 8.6e-40 166.8 93 82.8
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 1.1e-39 166.4 100 80.0
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.5e-39 166.0 91 85.7
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.5e-39 166.0 91 85.7
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.9e-39 165.6 92 81.5
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 2.5e-39 165.2 99 80.8
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 3.2e-39 164.9 93 81.7
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 7.2e-39 163.7 91 82.4
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 7.2e-39 163.7 92 80.4
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 7.2e-39 163.7 92 80.4
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.2e-38 162.9 100 79.0
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.2e-38 162.9 99 79.8
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.6e-38 162.5 99 78.8
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 2.1e-38 162.2 89 84.3
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 2.8e-38 161.8 102 76.5
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 2.8e-38 161.8 90 84.4
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 3.6e-38 161.4 97 78.4
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 3.6e-38 161.4 97 79.4
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 8.0e-38 160.2 99 76.8
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.8e-37 159.1 99 77.8
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.8e-37 159.1 99 77.8
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 1.8e-37 159.1 99 77.8
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 1.8e-37 159.1 91 80.2
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 2.3e-37 158.7 98 77.6
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 2.3e-37 158.7 98 76.5
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 5.2e-37 157.5 91 82.4
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 5.2e-37 157.5 97 78.4
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 6.8e-37 157.1 99 73.7
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 8.8e-37 156.8 91 81.3
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 8.8e-37 156.8 79 89.9
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 1.2e-36 156.4 79 91.1
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 1.5e-36 156.0 98 75.5
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 1.5e-36 156.0 98 75.5
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 2.6e-36 155.2 92 78.3
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 3.4e-36 154.8 96 75.0
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 3.4e-36 154.8 97 74.2
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 4.4e-36 154.5 87 80.5
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 1.3e-35 152.9 99 68.7
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 1.3e-35 152.9 97 74.2
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 1.3e-35 152.9 91 79.1
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 1.3e-35 152.9 85 83.5
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.7e-35 152.5 99 68.7
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.7e-35 152.5 98 73.5
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 2.2e-35 152.1 99 68.7
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 2.2e-35 152.1 99 68.7
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 2.2e-35 152.1 79 84.8
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 2.2e-35 152.1 97 74.2
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 2.2e-35 152.1 79 84.8
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 2.8e-35 151.8 86 80.2
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 2.8e-35 151.8 79 86.1
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 3.7e-35 151.4 99 68.7
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 3.7e-35 151.4 99 69.7
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 3.7e-35 151.4 81 84.0
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 6.3e-35 150.6 99 72.7
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 8.3e-35 150.2 79 87.3
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.1e-34 149.8 94 74.5
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.1e-34 149.8 90 76.7
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 1.8e-34 149.1 91 76.9
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 2.4e-34 148.7 92 72.8
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.4e-34 148.7 99 67.7
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 2.4e-34 148.7 85 78.8
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 3.1e-34 148.3 93 75.3
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 5.4e-34 147.5 89 78.7
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 7.0e-34 147.1 97 68.0
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 7.0e-34 147.1 97 68.0
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 9.2e-34 146.7 96 67.7
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 9.2e-34 146.7 118 62.7
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.6e-33 146.0 92 73.9
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 1.6e-33 146.0 89 74.2
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 2.0e-33 145.6 79 81.0
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 2.0e-33 145.6 97 67.0
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 2.0e-33 145.6 97 67.0
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 8.6e-32 140.2 86 70.9
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 8.6e-32 140.2 86 70.9
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 3.3e-31 138.3 76 78.9
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 7.3e-31 137.1 88 69.3
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 1.2e-30 136.3 86 69.8
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 8.0e-30 133.7 68 86.8
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 3.0e-29 131.7 66 87.9
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 5.2e-29 131.0 93 63.4
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 8.9e-29 130.2 66 84.8
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 1.2e-28 129.8 66 86.4
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.5e-28 129.4 65 87.7
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 4.4e-28 127.9 88 69.3
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.4e-28 127.9 86 73.3
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 1.1e-26 123.2 90 58.9
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 1.4e-26 122.9 72 79.2
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 2.3e-24 115.5 63 77.8
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 8.6e-24 113.6 91 62.6
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 1.9e-23 112.5 74 66.2
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 3.3e-23 111.7 53 88.7
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 5.6e-23 110.9 90 57.8
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 5.6e-23 110.9 63 76.2
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 7.3e-23 110.5 62 77.4
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 9.5e-23 110.2 66 77.3
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 2.1e-22 109.0 66 71.2
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 6.2e-22 107.5 61 85.2
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 1.2e-20 103.2 103 51.5
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 2.0e-20 102.4 63 68.3
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 3.4e-20 101.7 67 71.6
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 5.8e-20 100.9 64 67.2
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 8.3e-19 97.1 67 67.2
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 8.6e-16 87.0 66 62.1
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.2e-14 83.2 55 70.9
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 4.7e-14 81.3 79 50.6
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 8.1e-14 80.5 82 46.3
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 1.1e-13 80.1 73 50.7
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 4.4e-12 74.7 80 50.0
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 4.4e-12 74.7 33 93.9
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 6.6e-08 60.8 65 43.1


User provided reference genes

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