Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026583 Camellia sinensis var. sinensis HOM05D003696 ORTHO05D005158 1.9e-198 695.7 347 100.0
Actinidia21150 Actinidia chinensis HOM05D003696 ORTHO05D005158 1.9e-179 632.5 348 88.8
Actinidia04660 Actinidia chinensis HOM05D003696 ORTHO05D005158 3.1e-177 625.2 341 89.1
vmacro02623 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 1.9e-174 615.9 348 87.6
Rhsim13G0030400 Rhododendron simsii HOM05D003696 ORTHO05D005158 3.5e-173 611.7 348 86.2
Lj2C1161G6 Lonicera japonica HOM05D003696 ORTHO05D005158 5.1e-172 607.8 349 85.4
Dinv22488 Davidia involucrata HOM05D003696 ORTHO05D005158 1.3e-170 603.2 348 85.3
Rhsim01G0270500 Rhododendron simsii HOM05D003696 ORTHO05D005158 1.2e-168 596.7 348 83.6
Cc01_g18910 Coffea canephora HOM05D003696 ORTHO05D005158 5.8e-168 594.3 348 82.5
GSVIVG01000711001 Vitis vinifera HOM05D003696 ORTHO05D005158 2.9e-167 592.0 351 82.6
Hma1.2p1_0760F.1_g214220 Hydrangea macrophylla HOM05D003696 ORTHO05D005158 6.4e-167 590.9 339 84.1
MD03G1255900 Malus domestica HOM05D003696 ORTHO05D005158 6.0e-165 584.3 351 81.2
Potri.002G046000 Populus trichocarpa HOM05D003696 ORTHO05D005158 1.0e-164 583.6 351 81.2
Sabra02G0037000 Salix brachista HOM05D003696 ORTHO05D005158 3.9e-164 581.6 340 82.6
Prupe.8G233000 Prunus persica HOM05D003696 ORTHO05D005158 1.5e-163 579.7 351 80.9
Thecc.01G268800 Theobroma cacao HOM05D003696 ORTHO05D005158 1.5e-163 579.7 351 80.9
vmacro14880 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 2.5e-163 578.9 394 74.1
TAR362G0028 Trochodendron aralioides HOM05D003696 ORTHO05D005158 5.6e-163 577.8 351 80.9
CiPaw.03G256800 Carya illinoinensis HOM05D003696 ORTHO05D005158 2.8e-162 575.5 351 80.6
Haze_24522 Corylus avellana HOM05D003696 ORTHO05D005158 6.2e-162 574.3 351 81.2
Peaxi162Scf00049g02229 Petunia axillaris HOM05D003696 ORTHO05D005158 6.2e-162 574.3 347 80.1
QL12p042578 Quercus lobata HOM05D003696 ORTHO05D005158 6.2e-162 574.3 350 80.6
Eucgr.B01485 Eucalyptus grandis HOM05D003696 ORTHO05D005158 8.1e-162 573.9 341 80.9
MSTRG.18280 Avicennia marina HOM05D003696 ORTHO05D005158 1.4e-161 573.2 348 80.5
CAN.G1488.3 Capsicum annuum HOM05D003696 ORTHO05D005158 1.8e-161 572.8 348 79.0
Solyc09g065810.3 Solanum lycopersicum HOM05D003696 ORTHO05D005158 2.4e-161 572.4 348 79.9
Sopen09g027590 Solanum pennellii HOM05D003696 ORTHO05D005158 2.4e-161 572.4 348 79.9
RcHm_v2.0_Chr6g0289661 Rosa chinensis HOM05D003696 ORTHO05D005158 4.0e-161 571.6 351 79.8
Potri.005G217300 Populus trichocarpa HOM05D003696 ORTHO05D005158 5.3e-161 571.2 341 81.5
arahy.Tifrunner.gnm1.ann1.PHA4NK Arachis hypogaea HOM05D003696 ORTHO05D005158 9.0e-161 570.5 344 80.5
FAN15G1876 Fragaria x ananassa HOM05D003696 ORTHO05D005158 1.5e-160 569.7 351 79.8
Atru.chr5.1552 Acer truncatum HOM05D003696 ORTHO05D005158 2.0e-160 569.3 351 78.6
arahy.Tifrunner.gnm1.ann1.R5NTZZ Arachis hypogaea HOM05D003696 ORTHO05D005158 2.0e-160 569.3 344 80.5
CANSAT25G2047 Cannabis sativa HOM05D003696 ORTHO05D005158 3.4e-160 568.5 350 78.6
Migut.D00342 Erythranthe guttata HOM05D003696 ORTHO05D005158 4.5e-160 568.2 348 80.2
Duzib138G0212 Durio zibethinus HOM05D003696 ORTHO05D005158 7.6e-160 567.4 379 74.9
Aqoxy2G03500 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 1.3e-159 566.6 351 79.2
FAN27G2942 Fragaria x ananassa HOM05D003696 ORTHO05D005158 1.3e-159 566.6 351 79.2
Nn1g02525 Nelumbo nucifera HOM05D003696 ORTHO05D005158 1.3e-159 566.6 338 80.8
FAN20G1369 Fragaria x ananassa HOM05D003696 ORTHO05D005158 1.7e-159 566.2 351 79.2
Nitab4.5_0003053g0040 Nicotiana tabacum HOM05D003696 ORTHO05D005158 3.8e-159 565.1 347 78.4
PGR119G0829 Punica granatum HOM05D003696 ORTHO05D005158 4.9e-159 564.7 351 78.9
Duzib133G0262 Durio zibethinus HOM05D003696 ORTHO05D005158 6.4e-159 564.3 351 78.1
MD11G1276500 Malus domestica HOM05D003696 ORTHO05D005158 1.1e-158 563.5 351 79.5
SalBow4G1850 Salvia bowleyana HOM05D003696 ORTHO05D005158 1.4e-158 563.1 348 79.6
ECA248G0710 Erigeron canadensis HOM05D003696 ORTHO05D005158 1.9e-158 562.8 349 79.1
Lalb_Chr01g0019921 Lupinus albus HOM05D003696 ORTHO05D005158 2.5e-158 562.4 351 78.3
Nitab4.5_0000187g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 4.2e-158 561.6 348 78.2
Ciclev10019381m.g Citrus clementina HOM05D003696 ORTHO05D005158 5.5e-158 561.2 341 78.9
FvH4_2g22730 Fragaria vesca HOM05D003696 ORTHO05D005158 7.1e-158 560.8 351 78.3
TWI18G1352 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 2.1e-157 559.3 351 78.9
Lj1g0000304 Lotus japonicus HOM05D003696 ORTHO05D005158 6.0e-157 557.8 342 77.8
Aa31LG5G20830 Aethionema arabicum HOM05D003696 ORTHO05D005158 7.9e-157 557.4 347 77.5
Manes.01G202600 Manihot esculenta HOM05D003696 ORTHO05D005158 1.0e-156 557.0 351 78.3
Glyma.02G143000 Glycine max HOM05D003696 ORTHO05D005158 2.3e-156 555.8 342 78.7
Thhalv10016535m.g Eutrema salsugineum HOM05D003696 ORTHO05D005158 3.9e-156 555.1 347 77.5
THA.LOC104824177 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 5.1e-156 554.7 351 77.5
Glyma.10G031400 Glycine max HOM05D003696 ORTHO05D005158 6.7e-156 554.3 342 78.7
MELO3C015756.2 Cucumis melo HOM05D003696 ORTHO05D005158 8.7e-156 553.9 351 76.4
Sed0021830 Sechium edule HOM05D003696 ORTHO05D005158 8.7e-156 553.9 351 76.9
Sp4g21230 Schrenkiella parvula HOM05D003696 ORTHO05D005158 1.1e-155 553.5 347 77.2
Lalb_Chr06g0162701 Lupinus albus HOM05D003696 ORTHO05D005158 1.9e-155 552.7 340 77.1
unitig_22.g5276 Utricularia gibba HOM05D003696 ORTHO05D005158 1.9e-155 552.7 348 76.7
CARHR133570 Cardamine hirsuta HOM05D003696 ORTHO05D005158 2.5e-155 552.4 347 77.5
TWI75G1072 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 2.5e-155 552.4 344 78.5
Aqoxy5G00373 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 4.3e-155 551.6 350 77.7
CsaV3_7G027640 Cucumis sativus L. HOM05D003696 ORTHO05D005158 4.3e-155 551.6 351 76.1
Lsat_1_v5_gn_5_186821 Lactuca sativa HOM05D003696 ORTHO05D005158 4.3e-155 551.6 351 75.8
HanXRQChr06g0177911 Helianthus annuus HOM05D003696 ORTHO05D005158 5.6e-155 551.2 353 76.8
ATR0665G388 Amborella trichopoda HOM05D003696 ORTHO05D005158 9.6e-155 550.4 349 75.6
Peaxi162Scf01311g00020 Petunia axillaris HOM05D003696 ORTHO05D005158 9.6e-155 550.4 348 75.6
Carub.0004s2087 Capsella rubella HOM05D003696 ORTHO05D005158 1.6e-154 549.7 347 77.2
AL4G36150 Arabidopsis lyrata HOM05D003696 ORTHO05D005158 2.1e-154 549.3 347 77.2
Ca_08640_v3 Cicer arietinum L. HOM05D003696 ORTHO05D005158 2.1e-154 549.3 351 76.9
TPR.G19113 Trifolium pratense HOM05D003696 ORTHO05D005158 2.8e-154 548.9 351 77.5
BcaC02g07441 Brassica carinata HOM05D003696 ORTHO05D005158 6.2e-154 547.7 349 76.8
C04p66920 Brassica napus HOM05D003696 ORTHO05D005158 6.2e-154 547.7 349 76.8
HanXRQChr01g0006891 Helianthus annuus HOM05D003696 ORTHO05D005158 6.2e-154 547.7 349 77.1
AUR62011954 Chenopodium quinoa HOM05D003696 ORTHO05D005158 8.2e-154 547.4 341 76.5
AUR62032267 Chenopodium quinoa HOM05D003696 ORTHO05D005158 8.2e-154 547.4 341 76.5
AT2G38840 Arabidopsis thaliana HOM05D003696 ORTHO05D005158 1.1e-153 547.0 347 76.4
PSO210G6865 Papaver somniferum HOM05D003696 ORTHO05D005158 1.1e-153 547.0 344 76.2
THA.LOC104804694 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 1.1e-153 547.0 351 76.4
A03p21680 Brassica napus HOM05D003696 ORTHO05D005158 1.4e-153 546.6 347 76.4
BraA03t11403Z Brassica rapa HOM05D003696 ORTHO05D005158 1.4e-153 546.6 347 76.4
PSO832G3077 Papaver somniferum HOM05D003696 ORTHO05D005158 1.4e-153 546.6 344 76.2
A04p29630 Brassica napus HOM05D003696 ORTHO05D005158 1.8e-153 546.2 349 76.5
Phvul.007G176200 Phaseolus vulgaris HOM05D003696 ORTHO05D005158 1.8e-153 546.2 342 76.6
C03p25680 Brassica napus HOM05D003696 ORTHO05D005158 2.4e-153 545.8 347 76.4
BcaC01g05515 Brassica carinata HOM05D003696 ORTHO05D005158 3.1e-153 545.4 347 76.1
BolC3t14954H Brassica oleracea HOM05D003696 ORTHO05D005158 3.1e-153 545.4 347 76.1
Gorai.001G242400 Gossypium raimondii HOM05D003696 ORTHO05D005158 9.0e-153 543.9 351 75.8
Psat3g060760 Pisum sativum HOM05D003696 ORTHO05D005158 9.0e-153 543.9 351 76.1
BraA04t18429Z Brassica rapa HOM05D003696 ORTHO05D005158 1.2e-152 543.5 349 76.2
Gohir.D11G132000 Gossypium hirsutum HOM05D003696 ORTHO05D005158 1.2e-152 543.5 351 74.9
BcaB01g03621 Brassica carinata HOM05D003696 ORTHO05D005158 1.5e-152 543.1 347 75.8
Gohir.A11G126500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 1.5e-152 543.1 351 74.6
Gorai.007G141200 Gossypium raimondii HOM05D003696 ORTHO05D005158 2.0e-152 542.7 351 74.6
BolC4t28193H Brassica oleracea HOM05D003696 ORTHO05D005158 2.6e-152 542.3 349 76.5
Gohir.A07G208500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 2.6e-152 542.3 351 75.5
Gohir.D07G214400 Gossypium hirsutum HOM05D003696 ORTHO05D005158 7.6e-152 540.8 351 75.8
FAN24G1113 Fragaria x ananassa HOM05D003696 ORTHO05D005158 4.9e-151 538.1 341 77.7
Manes.05G083700 Manihot esculenta HOM05D003696 ORTHO05D005158 4.2e-150 535.0 351 76.1
Solyc06g084080.4 Solanum lycopersicum HOM05D003696 ORTHO05D005158 4.2e-150 535.0 348 75.3
PGSC0003DMG400020060 Solanum tuberosum HOM05D003696 ORTHO05D005158 5.5e-150 534.6 338 77.2
Sopen06g035470 Solanum pennellii HOM05D003696 ORTHO05D005158 2.7e-149 532.3 348 75.0
TAR365G0099 Trochodendron aralioides HOM05D003696 ORTHO05D005158 3.5e-149 531.9 304 84.9
CDE04G3179 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 5.1e-148 528.1 350 72.9
Nitab4.5_0004899g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 5.1e-148 528.1 348 73.9
Lj5g0013019 Lotus japonicus HOM05D003696 ORTHO05D005158 1.1e-147 526.9 342 74.3
CDE07G1976 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 7.4e-147 524.2 350 72.6
Oeu011521.4 Olea europaea HOM05D003696 ORTHO05D005158 2.4e-145 519.2 304 82.6
EL10Ac5g10463 Beta vulgaris HOM05D003696 ORTHO05D005158 1.2e-144 516.9 342 73.1
Medtr1g070940 Medicago truncatula HOM05D003696 ORTHO05D005158 1.2e-144 516.9 350 71.4
HPP92_012304 Vanilla planifolia HOM05D003696 ORTHO05D005158 2.0e-144 516.2 352 69.3
CAN.G771.13 Capsicum annuum HOM05D003696 ORTHO05D005158 1.0e-143 513.8 343 72.3
Os03g0796800 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 3.0e-140 502.3 348 69.8
ClCG09G007480 Citrullus lanatus HOM05D003696 ORTHO05D005158 2.5e-139 499.2 304 78.3
TPR.G39048 Trifolium pratense HOM05D003696 ORTHO05D005158 1.7e-138 496.5 332 72.3
Zm00001eb060800 Zea mays HOM05D003696 ORTHO05D005158 4.8e-138 495.0 348 67.8
Medtr7g096020 Medicago truncatula HOM05D003696 ORTHO05D005158 1.8e-137 493.0 304 79.3
arahy.Tifrunner.gnm1.ann1.RW1UC5 Arachis hypogaea HOM05D003696 ORTHO05D005158 6.9e-137 491.1 341 69.2
arahy.Tifrunner.gnm1.ann1.YF2GLB Arachis hypogaea HOM05D003696 ORTHO05D005158 1.7e-135 486.5 341 68.0
VMungo0720G2873 Vigna mungo HOM05D003696 ORTHO05D005158 3.8e-135 485.3 304 77.6
DCAR_002690 Daucus carota HOM05D003696 ORTHO05D005158 5.0e-135 485.0 305 77.0
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 2.5e-134 482.6 326 72.7
Os07g0181700 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 1.6e-133 479.9 337 65.9
SHI09972 Sapria himalayana HOM05D003696 ORTHO05D005158 3.3e-131 472.2 333 70.0
Zm00001eb301480 Zea mays HOM05D003696 ORTHO05D005158 2.8e-130 469.2 338 64.8
Oeu025782.1 Olea europaea HOM05D003696 ORTHO05D005158 5.2e-124 448.4 348 64.7
SEGI_18155 Sequoiadendron giganteum HOM05D003696 ORTHO05D005158 2.9e-119 432.6 344 61.9
Psat6g058040 Pisum sativum HOM05D003696 ORTHO05D005158 7.5e-115 417.9 272 74.6
Nitab4.5_0001044g0030 Nicotiana tabacum HOM05D003696 ORTHO05D005158 3.7e-114 415.6 348 62.1
COL.COLO4_06092 Corchorus olitorius HOM05D003696 ORTHO05D005158 5.3e-113 411.8 304 69.1
SMO358G0641 Selaginella moellendorffii HOM05D003696 ORTHO05D005158 1.2e-104 384.0 326 56.1
Dinv34560 Davidia involucrata HOM05D003696 ORTHO05D005158 2.0e-104 383.3 222 85.1
Actinidia24931 Actinidia chinensis HOM05D003696 ORTHO05D005158 2.7e-104 382.9 217 84.8
Pp3c22_17680 Physcomitrium patens HOM05D003696 ORTHO05D005158 8.9e-100 367.9 348 54.0
Mapoly0093s0035 Marchantia polymorpha HOM05D003696 ORTHO05D005158 7.5e-99 364.8 344 50.9
Sed0026747 Sechium edule HOM05D003696 ORTHO05D005158 2.3e-92 343.2 222 75.2
Cpa.g.sc52.106 Carica papaya HOM05D003696 ORTHO05D005158 5.8e-91 338.6 214 76.2
Hund22719 Selenicereus undatus HOM05D003696 ORTHO05D005158 6.4e-90 335.1 200 79.0
DCAR_018442 Daucus carota HOM05D003696 ORTHO05D005158 1.1e-86 324.3 244 67.6
Sc05g0001070 Simmondsia chinensis HOM05D003696 ORTHO05D005158 4.7e-85 318.9 214 70.1
Zm00001eb060850 Zea mays HOM05D003696 ORTHO05D005158 2.9e-82 309.7 304 53.0
CBR_g8307 Chara braunii HOM05D003696 ORTHO05D005158 8.3e-82 308.1 317 46.7
Ah.11g050060 Amaranthus hybridus HOM05D003696 ORTHO05D005158 4.1e-81 305.8 197 75.1
Zm00001eb060900 Zea mays HOM05D003696 ORTHO05D020192 4.3e-70 269.2 179 71.5
Ah.02g111370 Amaranthus hybridus HOM05D003696 ORTHO05D005158 4.9e-66 255.8 190 66.3
HanXRQChr04g0094761 Helianthus annuus HOM05D003696 ORTHO05D005158 5.4e-65 252.3 160 76.9
Hund22720 Selenicereus undatus HOM05D003696 ORTHO05D005158 2.9e-58 229.9 142 76.8
arahy.Tifrunner.gnm1.ann1.1H3032 Arachis hypogaea HOM05D003696 ORTHO05D005158 2.3e-55 220.3 213 58.2
FAN12G4236 Fragaria x ananassa HOM05D003696 ORTHO05D005158 4.0e-52 209.5 215 47.4
arahy.Tifrunner.gnm1.ann1.VHR0A7 Arachis hypogaea HOM05D001154 ORTHO05D010892 2.6e-51 206.8 124 80.6
MCO03G033 Micromonas commoda HOM05D003696 ORTHO05D005158 1.2e-48 198.0 331 33.5
Zm00001eb212950 Zea mays HOM05D003696 ORTHO05D005158 1.0e-47 194.9 140 65.7
Duzib211G0248 Durio zibethinus HOM05D003696 ORTHO05D020192 1.8e-47 194.1 110 86.4
Cre16.g663050 Chlamydomonas reinhardtii HOM05D003696 ORTHO05D005158 8.7e-47 191.8 295 35.6
Cpa.g.sc52.105 Carica papaya HOM05D003696 ORTHO05D020192 5.3e-36 156.0 96 77.1
arahy.Tifrunner.gnm1.ann1.Y88CQU Arachis hypogaea HOM05D003696 ORTHO05D005158 9.0e-36 155.2 140 60.0
HanXRQChr11g0343431 Helianthus annuus HOM05D003696 ORTHO05D005158 3.2e-33 146.7 104 68.3
C04p68080 Brassica napus HOM05D003696 ORTHO05D020192 3.4e-19 100.1 59 74.6
BolC4t28313H Brassica oleracea HOM05D003696 ORTHO05D020192 3.4e-19 100.1 59 74.6
BraA04t18522Z Brassica rapa HOM05D003696 ORTHO05D020192 5.0e-18 96.3 59 72.9
C04p68070 Brassica napus HOM05D003696 ORTHO05D016804 7.9e-16 89.0 67 64.2
BolC4t28312H Brassica oleracea HOM05D003696 ORTHO05D016804 7.9e-16 89.0 67 64.2
C04p68090 Brassica napus HOM05D025610 ORTHO05D016804 3.0e-15 87.0 109 44.0
BolC4t28314H Brassica oleracea HOM05D025610 ORTHO05D016804 3.0e-15 87.0 109 44.0
BraA04t18521Z Brassica rapa HOM05D000956 ORTHO05D016804 1.1e-12 78.6 55 63.6
BcaC02g07333 Brassica carinata HOM05D001127 ORTHO05D016804 6.5e-10 69.3 45 66.7
arahy.Tifrunner.gnm1.ann1.IE214W Arachis hypogaea HOM05D001154 ORTHO05D010892 8.5e-10 68.9 34 82.4
BcaC02g07336 Brassica carinata HOM05D001127 ORTHO05D002230 1.1e-09 68.6 34 79.4
HanXRQChr03g0064341 Helianthus annuus HOM05D003696 ORTHO05D020192 3.2e-09 67.0 33 87.9
arahy.Tifrunner.gnm1.ann1.ER9TT4 Arachis hypogaea HOM05D038369 ORTHO05D010597 1.4e-07 61.6 46 67.4
A06p28820 Brassica napus HOM05D003696 ORTHO05D016804 2.3e-07 60.8 44 59.1
BraA06t25826Z Brassica rapa HOM05D003696 ORTHO05D016804 2.3e-07 60.8 44 59.1


User provided reference genes

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