Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 3494.5 1810 100.0
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2772.3 1835 80.0
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2696.8 1853 77.5
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2546.2 1853 72.3
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2484.1 1850 70.8
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2440.6 1847 69.7
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2439.5 1904 68.1
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2426.7 1854 68.9
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2419.0 1853 69.3
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2418.3 1848 69.5
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2413.6 1851 68.4
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2400.9 1835 68.3
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2396.7 1854 68.2
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2395.9 1837 67.9
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2394.4 1856 67.8
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2385.9 1854 68.1
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2378.6 1847 68.2
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2371.7 1853 67.7
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2368.2 1851 67.2
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2367.0 1847 67.2
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2366.3 1880 67.5
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2365.1 1840 68.2
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2360.9 1851 68.0
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2356.6 1880 67.3
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2355.9 1848 67.9
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2353.2 1846 67.2
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2350.1 1855 66.8
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2345.9 1852 66.3
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2343.5 1857 66.9
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2340.1 1861 66.6
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2328.9 1845 67.0
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2327.0 1846 67.1
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2322.7 2398 55.8
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2319.7 1842 66.3
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2313.1 1857 66.3
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2309.3 1844 66.9
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2306.6 1846 66.2
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2302.3 1846 65.8
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2300.0 1853 66.0
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2295.0 1839 65.9
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2292.3 1833 65.0
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2291.9 1842 65.6
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2291.5 1844 65.7
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2288.8 1845 64.8
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2281.5 1843 64.8
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2281.1 1869 65.5
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2275.4 1847 65.8
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2271.9 1851 65.4
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2257.6 1839 65.5
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2257.6 1842 65.0
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2254.6 1862 64.1
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2251.5 1842 65.0
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2248.8 1859 64.1
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2233.8 1932 62.7
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2233.8 1842 64.0
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2231.8 1987 60.4
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2226.8 1844 64.0
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2224.9 1865 63.6
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2222.2 1873 63.7
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2218.4 1861 64.4
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2216.4 1859 63.9
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2211.4 1859 63.7
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2199.9 1851 62.9
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2198.3 1851 63.0
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2197.2 1859 62.7
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2197.2 1826 64.3
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2191.0 1852 63.3
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2189.1 1858 63.1
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2184.5 1845 62.7
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2183.7 1845 62.8
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2183.7 1852 62.7
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2182.1 1852 62.9
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2127.4 1862 61.7
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2125.1 1871 61.5
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2050.4 1834 60.3
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 1965.3 1849 57.5
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1944.9 1515 67.7
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1942.2 1530 66.4
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1879.8 1433 69.1
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1852.4 1397 69.5
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1844.7 1428 69.0
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1842.8 1233 78.6
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1833.2 1358 70.8
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1718.7 1339 68.0
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1640.2 1369 66.1
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1614.7 1376 64.0
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1534.6 1859 49.4
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1518.1 1915 45.2
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1476.8 1892 44.6
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1441.4 1858 45.1
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1394.4 1136 66.4
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1380.5 1181 62.3
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1354.0 1673 46.0
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1283.5 1119 59.7
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1245.0 1384 53.4
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1094.3 1077 55.8
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 1.1e-307 1060.8 937 59.6
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 5.0e-263 912.5 1603 36.3
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.1e-257 894.8 917 53.2
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 2.9e-226 790.4 632 66.8
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.9e-222 777.7 1750 32.1
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 3.5e-216 756.9 791 51.7
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 1.1e-212 745.3 1762 32.5
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 3.8e-194 683.7 571 63.0
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 6.1e-192 676.4 512 68.0
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 5.2e-175 620.2 461 69.0
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 4.4e-174 617.1 675 50.8
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 9.4e-169 599.4 457 67.6
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 3.5e-155 554.3 456 66.9
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 1.8e-151 542.0 448 63.8
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.1e-148 532.7 502 55.6
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 2.3e-146 525.0 327 84.4
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 7.8e-139 500.0 2045 26.1
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 7.1e-124 450.3 282 77.0
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 9.9e-118 429.9 823 36.8
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.4e-111 409.5 281 75.8
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 9.0e-111 406.8 374 61.5
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 1.0e-93 350.1 290 64.1
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 2.3e-90 339.0 297 61.6
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 8.7e-90 337.0 1702 23.4
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 4.8e-88 331.3 298 60.7
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 3.7e-80 305.1 158 93.0
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 1.5e-65 256.5 197 72.6
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 2.0e-65 256.1 321 50.5
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 8.5e-61 240.7 342 41.5
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.0e-53 217.2 161 77.6
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 1.6e-51 209.9 324 44.1
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.6e-51 209.9 189 56.6
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 5.2e-50 204.9 162 64.2
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 2.8e-48 199.1 273 46.5
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 1.3e-45 190.3 176 58.0
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 2.3e-45 189.5 176 58.0
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 3.3e-44 185.7 144 64.6
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 9.5e-44 184.1 198 54.0
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 1.8e-42 179.9 149 66.4
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 1.8e-42 179.9 125 70.4
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 9.2e-39 167.5 180 51.1
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 2.8e-35 156.0 210 42.4
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 5.4e-31 141.7 152 53.9
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.6e-30 138.7 153 46.4
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 6.0e-30 138.3 141 55.3
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 1.5e-28 133.7 176 42.6
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 2.8e-27 129.4 149 49.0
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 6.2e-27 128.3 88 70.5
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 3.1e-26 125.9 78 79.5
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 5.8e-25 121.7 73 79.5
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.1e-23 115.5 149 46.3
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 9.5e-20 104.4 92 57.6
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.7e-19 102.1 84 57.1
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 1.8e-18 100.1 177 35.6
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 2.2e-16 93.2 145 40.7
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 2.9e-16 92.8 169 35.5
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 2.4e-15 89.7 74 66.2
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 2.1e-14 86.7 90 51.1
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 3.0e-13 82.8 55 70.9
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 1.1e-12 80.9 60 65.0
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 3.6e-11 75.9 72 47.2
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 1.8e-10 73.6 115 37.4
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 1.1e-07 64.3 80 52.5
CSS0008887 Camellia sinensis var. sinensis HOM05D007039 ORTHO05D008886 4.2e-07 62.4 28 100.0
MELO3C033954.2 Cucumis melo HOM05D004500 ORTHO05D005775 9.3e-07 61.2 48 56.2
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 9.3e-07 61.2 78 46.2
MELO3C034995.2 Cucumis melo HOM05D004500 ORTHO05D005775 6.0e-06 58.5 48 56.2


User provided reference genes

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