Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026541 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 1.0e-28 129.4 66 100.0
CSS0014341 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 8.6e-20 99.8 66 83.3
CSS0032153 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 2.3e-17 91.7 48 93.8
CSS0008437 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 5.2e-17 90.5 48 91.7
Actinidia25530 Actinidia chinensis HOM05D003980 ORTHO05D005301 1.8e-14 82.0 45 86.7
CSS0018148 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 2.4e-14 81.6 48 83.3
CANSAT56G3290 Cannabis sativa HOM05D003980 ORTHO05D005301 9.2e-14 79.7 45 82.2
Cfa018720 Carpinus fangiana HOM05D003980 ORTHO05D005301 9.2e-14 79.7 45 80.0
Haze_07113 Corylus avellana HOM05D003980 ORTHO05D005301 9.2e-14 79.7 45 80.0
CSS0000982 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 1.2e-13 79.3 45 86.7
Hund10056 Selenicereus undatus HOM05D003980 ORTHO05D005301 1.2e-13 79.3 45 84.4
COL.COLO4_37237 Corchorus olitorius HOM05D003980 ORTHO05D005301 1.6e-13 79.0 45 82.2
Dinv13736 Davidia involucrata HOM05D003980 ORTHO05D005301 1.6e-13 79.0 45 82.2
GSVIVG01008633001 Vitis vinifera HOM05D003980 ORTHO05D005301 5.9e-13 77.0 44 84.1
Duzib205G0834 Durio zibethinus HOM05D003980 ORTHO05D005301 7.8e-13 76.6 45 82.2
HanXRQChr16g0498871 Helianthus annuus HOM05D003980 ORTHO05D005301 7.8e-13 76.6 45 77.8
Atru.chr6.1901 Acer truncatum HOM05D003980 ORTHO05D005301 1.0e-12 76.3 45 80.0
ClCG06G018320 Citrullus lanatus HOM05D003980 ORTHO05D005301 1.0e-12 76.3 44 81.8
MELO3C026163.2 Cucumis melo HOM05D003980 ORTHO05D005301 1.0e-12 76.3 44 81.8
CsaV3_1G000110 Cucumis sativus L. HOM05D003980 ORTHO05D005301 1.0e-12 76.3 44 81.8
ECA232G4466 Erigeron canadensis HOM05D003980 ORTHO05D005301 1.3e-12 75.9 45 75.6
Ciclev10030650m.g Citrus clementina HOM05D003980 ORTHO05D005301 1.7e-12 75.5 44 84.1
Potri.015G105000 Populus trichocarpa HOM05D003980 ORTHO05D005301 1.7e-12 75.5 45 80.0
Duzib084G0479 Durio zibethinus HOM05D003980 ORTHO05D005301 2.3e-12 75.1 45 77.8
Manes.06G125700 Manihot esculenta HOM05D003980 ORTHO05D005301 2.3e-12 75.1 44 81.8
PSO591G0475 Papaver somniferum HOM05D003980 ORTHO05D005301 2.3e-12 75.1 45 80.0
PSO832G3889 Papaver somniferum HOM05D003980 ORTHO05D005301 2.3e-12 75.1 45 80.0
DCAR_021407 Daucus carota HOM05D003980 ORTHO05D005301 2.9e-12 74.7 44 79.5
MD14G1148800 Malus domestica HOM05D003980 ORTHO05D005301 2.9e-12 74.7 44 81.8
Thecc.03G138500 Theobroma cacao HOM05D003980 ORTHO05D005301 2.9e-12 74.7 45 77.8
TAR371G0735 Trochodendron aralioides HOM05D003980 ORTHO05D005301 2.9e-12 74.7 45 77.8
CiPaw.11G001400 Carya illinoinensis HOM05D003980 ORTHO05D005301 3.9e-12 74.3 44 77.3
HanXRQChr09g0273931 Helianthus annuus HOM05D003980 ORTHO05D005301 3.9e-12 74.3 45 77.8
MSTRG.11233 Avicennia marina HOM05D003980 ORTHO05D005301 5.0e-12 73.9 45 77.8
Gohir.A09G248100 Gossypium hirsutum HOM05D003980 ORTHO05D005301 5.0e-12 73.9 45 77.8
Gohir.D09G248900 Gossypium hirsutum HOM05D003980 ORTHO05D005301 5.0e-12 73.9 45 77.8
Gorai.006G273300 Gossypium raimondii HOM05D003980 ORTHO05D005301 5.0e-12 73.9 45 77.8
Lj9A485G82 Lonicera japonica HOM05D003980 ORTHO05D005301 5.0e-12 73.9 44 77.3
Solyc03g118350.4 Solanum lycopersicum HOM05D003980 ORTHO05D005301 5.0e-12 73.9 45 80.0
Sopen03g037250 Solanum pennellii HOM05D003980 ORTHO05D005301 5.0e-12 73.9 45 80.0
PGSC0003DMG401014249 Solanum tuberosum HOM05D003980 ORTHO05D005301 5.0e-12 73.9 45 80.0
Lj4g0027174 Lotus japonicus HOM05D003980 ORTHO05D005301 8.6e-12 73.2 45 77.8
Potri.012G105800 Populus trichocarpa HOM05D003980 ORTHO05D005301 8.6e-12 73.2 45 77.8
Sabra12G0078100 Salix brachista HOM05D003980 ORTHO05D005301 8.6e-12 73.2 45 77.8
AUR62009517 Chenopodium quinoa HOM05D003980 ORTHO05D005301 1.1e-11 72.8 44 79.5
AUR62034771 Chenopodium quinoa HOM05D003980 ORTHO05D005301 1.1e-11 72.8 44 79.5
Lsat_1_v5_gn_4_84700 Lactuca sativa HOM05D003980 ORTHO05D005301 1.1e-11 72.8 44 75.0
vmacro19166 Vaccinium macrocarpon HOM05D003980 ORTHO05D005301 1.1e-11 72.8 45 77.8
EL10Ac5g11306 Beta vulgaris HOM05D003980 ORTHO05D005301 1.5e-11 72.4 44 79.5
Cc04_g05920 Coffea canephora HOM05D003980 ORTHO05D005301 1.5e-11 72.4 44 79.5
Dinv23210 Davidia involucrata HOM05D003980 ORTHO05D005301 1.9e-11 72.0 44 77.3
Migut.I00610 Erythranthe guttata HOM05D003980 ORTHO05D005301 1.9e-11 72.0 45 73.3
Lj5A88T63 Lonicera japonica HOM05D003980 ORTHO05D005301 1.9e-11 72.0 44 77.3
Nn3g16303 Nelumbo nucifera HOM05D003980 ORTHO05D005301 1.9e-11 72.0 45 75.6
ATR0693G246 Amborella trichopoda HOM05D003980 ORTHO05D005301 2.5e-11 71.6 45 73.3
MD06G1132400 Malus domestica HOM05D003980 ORTHO05D005301 2.5e-11 71.6 44 77.3
Prupe.5G143400 Prunus persica HOM05D003980 ORTHO05D005301 2.5e-11 71.6 44 77.3
QL10p000901 Quercus lobata HOM05D003980 ORTHO05D005301 2.5e-11 71.6 45 73.3
Rhsim08G0195900 Rhododendron simsii HOM05D003980 ORTHO05D005301 2.5e-11 71.6 45 75.6
Sed0025035 Sechium edule HOM05D003980 ORTHO05D005301 2.5e-11 71.6 44 75.0
TWI39G0366 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 2.5e-11 71.6 45 75.6
Ah.02g114660 Amaranthus hybridus HOM05D003980 ORTHO05D005301 3.3e-11 71.2 44 77.3
FAN18G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 3.3e-11 71.2 44 77.3
PGR083G0225 Punica granatum HOM05D003980 ORTHO05D005301 3.3e-11 71.2 44 77.3
RcHm_v2.0_Chr7g0188941 Rosa chinensis HOM05D003980 ORTHO05D005301 3.3e-11 71.2 44 77.3
Sabra15G0125200 Salix brachista HOM05D003980 ORTHO05D005301 3.3e-11 71.2 45 75.6
SalBow7G4845 Salvia bowleyana HOM05D003980 ORTHO05D005301 3.3e-11 71.2 44 77.3
Aqoxy5G03175 Aquilegia oxysepala HOM05D003980 ORTHO05D005301 4.3e-11 70.9 44 72.7
Phvul.002G282600 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 4.3e-11 70.9 44 77.3
TWI14G0519 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 4.3e-11 70.9 45 75.6
Aa31LG11G3070 Aethionema arabicum HOM05D003980 ORTHO05D005301 5.6e-11 70.5 45 73.3
Hund02497 Selenicereus undatus HOM05D003980 ORTHO05D005301 5.6e-11 70.5 40 80.0
Glyma.05G201200 Glycine max HOM05D003980 ORTHO05D005301 7.3e-11 70.1 44 77.3
VMungo0251G0815 Vigna mungo HOM05D003980 ORTHO05D005301 7.3e-11 70.1 45 73.3
FvH4_5g09220 Fragaria vesca HOM05D003980 ORTHO05D005301 9.5e-11 69.7 44 75.0
FAN04G0599 Fragaria x ananassa HOM05D003980 ORTHO05D005301 9.5e-11 69.7 44 75.0
FAN08G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 9.5e-11 69.7 44 75.0
unitig_22.g6271 Utricularia gibba HOM05D003980 ORTHO05D005301 9.5e-11 69.7 44 77.3
AL6G34990 Arabidopsis lyrata HOM05D003980 ORTHO05D005301 1.2e-10 69.3 45 73.3
AT5G23720 Arabidopsis thaliana HOM05D003980 ORTHO05D005301 1.2e-10 69.3 45 73.3
Carub.0006s2147 Capsella rubella HOM05D003980 ORTHO05D005301 1.2e-10 69.3 45 73.3
CARHR189830 Cardamine hirsuta HOM05D003980 ORTHO05D005301 1.2e-10 69.3 45 73.3
Nn4g22168 Nelumbo nucifera HOM05D003980 ORTHO05D005301 1.2e-10 69.3 45 73.3
THA.LOC104821537 Tarenaya hassleriana HOM05D003980 ORTHO05D005301 1.2e-10 69.3 45 73.3
arahy.Tifrunner.gnm1.ann1.1NY8SK Arachis hypogaea HOM05D003980 ORTHO05D005301 1.6e-10 68.9 44 72.7
Glyma.08G008600 Glycine max HOM05D003980 ORTHO05D005301 1.6e-10 68.9 44 75.0
Cpa.g.sc4.108 Carica papaya HOM05D003980 ORTHO05D005301 2.1e-10 68.6 45 71.1
FAN13G1995 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.1e-10 68.6 44 72.7
Lalb_Chr23g0272921 Lupinus albus HOM05D003980 ORTHO05D005301 2.1e-10 68.6 44 75.0
Peaxi162Scf00314g00535 Petunia axillaris HOM05D003980 ORTHO05D005301 2.8e-10 68.2 40 80.0
Psat5g054480 Pisum sativum HOM05D003980 ORTHO05D005301 3.6e-10 67.8 44 75.0
DCAR_025658 Daucus carota HOM05D003980 ORTHO05D005301 4.7e-10 67.4 44 70.5
Phvul.009G164700 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 4.7e-10 67.4 44 72.7
TPR.G21586 Trifolium pratense HOM05D003980 ORTHO05D005301 4.7e-10 67.4 44 75.0
arahy.Tifrunner.gnm1.ann1.JJXJ29 Arachis hypogaea HOM05D003980 ORTHO05D005301 6.1e-10 67.0 44 72.7
arahy.Tifrunner.gnm1.ann1.US1BEE Arachis hypogaea HOM05D003980 ORTHO05D005301 6.1e-10 67.0 44 72.7
BcaNung01844 Brassica carinata HOM05D003980 ORTHO05D005301 6.1e-10 67.0 45 71.1
C07p43870 Brassica napus HOM05D003980 ORTHO05D005301 6.1e-10 67.0 45 71.1
BolC7t44915H Brassica oleracea HOM05D003980 ORTHO05D005301 6.1e-10 67.0 45 71.1
Thhalv10003616m.g Eutrema salsugineum HOM05D003980 ORTHO05D005301 6.1e-10 67.0 45 71.1
MBI19_g26308_MAGBIO Magnolia biondii HOM05D003980 ORTHO05D005301 6.1e-10 67.0 45 66.7
Eucgr.B00073 Eucalyptus grandis HOM05D003980 ORTHO05D005301 8.0e-10 66.6 45 68.9
Sp2g23510 Schrenkiella parvula HOM05D003980 ORTHO05D005301 8.0e-10 66.6 45 68.9
Lj1g0007025 Lotus japonicus HOM05D003980 ORTHO05D005301 1.0e-09 66.2 44 70.5
Lalb_Chr13g0297021 Lupinus albus HOM05D003980 ORTHO05D005301 1.0e-09 66.2 44 70.5
A06p34620 Brassica napus HOM05D003980 ORTHO05D005301 1.4e-09 65.9 45 68.9
BraA06t26390Z Brassica rapa HOM05D003980 ORTHO05D005301 1.4e-09 65.9 45 68.9
Nitab4.5_0000663g0190 Nicotiana tabacum HOM05D003980 ORTHO05D005301 1.4e-09 65.9 40 80.0
SHI14120 Sapria himalayana HOM05D003980 ORTHO05D005301 2.3e-09 65.1 47 68.1
Glyma.04G200300 Glycine max HOM05D003980 ORTHO05D005301 4.0e-09 64.3 44 68.2
Medtr3g498735 Medicago truncatula HOM05D003980 ORTHO05D005301 4.0e-09 64.3 44 70.5
Sc04g0000260 Simmondsia chinensis HOM05D003980 ORTHO05D005301 5.2e-09 63.9 44 72.7
Ca_10885_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 6.8e-09 63.5 44 70.5
Nitab4.5_0002450g0020 Nicotiana tabacum HOM05D003980 ORTHO05D005301 6.8e-09 63.5 40 77.5
Psat5g054520 Pisum sativum HOM05D003980 ORTHO05D005301 6.8e-09 63.5 45 68.9
TPR.G12812 Trifolium pratense HOM05D003980 ORTHO05D005301 6.8e-09 63.5 45 71.1
Ca_17584_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 8.9e-09 63.2 45 73.3
VMungo1309G0598 Vigna mungo HOM05D003980 ORTHO05D005301 8.9e-09 63.2 44 68.2
Ca_14153_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 1.2e-08 62.8 44 70.5
Psat7g039040 Pisum sativum HOM05D003980 ORTHO05D005301 2.6e-08 61.6 45 68.9
Ca_16085_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 3.4e-08 61.2 44 68.2
Zm00001eb130450 Zea mays HOM05D003980 ORTHO05D005301 3.4e-08 61.2 44 65.9
Medtr8g100000 Medicago truncatula HOM05D003980 ORTHO05D005301 4.4e-08 60.8 45 71.1
HPP92_006911 Vanilla planifolia HOM05D003980 ORTHO05D005301 4.4e-08 60.8 45 62.2
CDE01G0794 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 9.8e-08 59.7 44 61.4
SEGI_36335 Sequoiadendron giganteum HOM05D003980 ORTHO05D005301 9.8e-08 59.7 44 61.4
Os01g0311500 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 1.3e-07 59.3 44 63.6
Lalb_Chr12g0202411 Lupinus albus HOM05D003980 ORTHO05D005301 1.7e-07 58.9 44 63.6
Zm00001eb340730 Zea mays HOM05D003980 ORTHO05D005301 4.9e-07 57.4 44 56.8
Os01g0347000 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 1.4e-06 55.8 44 59.1


User provided reference genes

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