Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.5e-59 231.9 113 100.0
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.9e-57 224.6 114 97.4
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 9.1e-54 213.4 103 99.0
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 1.5e-48 196.1 110 85.5
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 2.6e-48 195.3 107 86.9
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.3e-48 194.9 107 87.9
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 5.7e-48 194.1 118 82.2
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 7.5e-48 193.7 103 89.3
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.7e-47 192.6 105 86.7
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 1.7e-47 192.6 103 89.3
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.7e-47 192.6 110 84.5
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 1.7e-47 192.6 110 84.5
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 2.2e-47 192.2 103 88.3
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 2.2e-47 192.2 116 81.0
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 2.8e-47 191.8 104 88.5
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 2.8e-47 191.8 104 88.5
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.8e-47 191.8 103 88.3
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.8e-47 191.8 116 81.9
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.8e-47 191.8 103 88.3
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.8e-47 191.8 116 81.9
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 2.8e-47 191.8 109 82.6
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 2.8e-47 191.8 117 79.5
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 2.8e-47 191.8 104 87.5
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 4.8e-47 191.0 103 86.4
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 4.8e-47 191.0 108 84.3
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 4.8e-47 191.0 111 82.0
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 4.8e-47 191.0 111 82.0
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 6.3e-47 190.7 116 80.2
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 6.3e-47 190.7 103 87.4
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 8.2e-47 190.3 112 83.9
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 8.2e-47 190.3 104 86.5
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 8.2e-47 190.3 104 86.5
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 8.2e-47 190.3 104 86.5
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 8.2e-47 190.3 103 86.4
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 8.2e-47 190.3 103 86.4
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.1e-46 189.9 104 86.5
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 1.1e-46 189.9 105 85.7
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 1.1e-46 189.9 115 83.5
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 1.1e-46 189.9 103 85.4
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 1.1e-46 189.9 104 84.6
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 1.4e-46 189.5 112 82.1
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 1.4e-46 189.5 101 88.1
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.4e-46 189.5 103 87.4
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.8e-46 189.1 104 86.5
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 1.8e-46 189.1 104 85.6
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.8e-46 189.1 115 80.9
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 1.8e-46 189.1 105 84.8
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 2.4e-46 188.7 104 85.6
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.4e-46 188.7 103 87.4
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 2.4e-46 188.7 111 81.1
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.1e-46 188.0 105 83.8
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 4.1e-46 188.0 104 85.6
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 5.3e-46 187.6 105 83.8
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 5.3e-46 187.6 114 79.8
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 5.3e-46 187.6 116 81.0
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 7.0e-46 187.2 105 83.8
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 7.0e-46 187.2 116 81.0
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 7.0e-46 187.2 113 77.9
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 7.0e-46 187.2 114 78.1
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 7.0e-46 187.2 104 83.7
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 9.1e-46 186.8 110 81.8
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 9.1e-46 186.8 111 79.3
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 9.1e-46 186.8 104 85.6
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 9.1e-46 186.8 104 85.6
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 1.2e-45 186.4 111 80.2
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 1.2e-45 186.4 116 80.2
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.2e-45 186.4 103 86.4
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.6e-45 186.0 116 80.2
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.6e-45 186.0 105 84.8
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 1.6e-45 186.0 102 86.3
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.6e-45 186.0 105 83.8
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 2.0e-45 185.7 110 81.8
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 2.0e-45 185.7 104 84.6
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 3.5e-45 184.9 116 80.2
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 3.5e-45 184.9 116 80.2
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 3.5e-45 184.9 103 85.4
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 3.5e-45 184.9 104 84.6
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 4.5e-45 184.5 103 82.5
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 4.5e-45 184.5 103 82.5
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 5.9e-45 184.1 109 78.9
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 7.7e-45 183.7 116 77.6
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 7.7e-45 183.7 105 82.9
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 7.7e-45 183.7 103 84.5
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 7.7e-45 183.7 104 83.7
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 1.3e-44 183.0 117 75.2
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 1.3e-44 183.0 105 83.8
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 1.3e-44 183.0 105 80.0
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.7e-44 182.6 104 82.7
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.7e-44 182.6 104 82.7
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.7e-44 182.6 104 82.7
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.7e-44 182.6 104 82.7
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.7e-44 182.6 104 82.7
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.7e-44 182.6 104 82.7
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 2.2e-44 182.2 116 78.4
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 8.5e-44 180.3 104 82.7
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.1e-43 179.9 101 84.2
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.1e-43 179.9 104 81.7
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.9e-43 179.1 110 80.0
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 1.9e-43 179.1 110 75.5
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 2.5e-43 178.7 109 78.9
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 9.4e-43 176.8 110 79.1
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 1.2e-42 176.4 110 80.0
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 1.2e-42 176.4 101 80.2
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.6e-42 176.0 110 80.9
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.4e-41 172.9 102 80.4
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 5.2e-41 171.0 117 75.2
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 5.2e-41 171.0 117 75.2
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.5e-40 169.5 104 81.7
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 2.0e-40 169.1 92 82.6
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 3.4e-40 168.3 104 79.8
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.4e-38 162.9 128 68.0
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.2e-37 159.8 81 88.9
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 5.9e-37 157.5 106 65.1
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 8.5e-36 153.7 90 74.4
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.1e-35 153.3 102 68.6
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 1.9e-35 152.5 105 72.4
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 4.0e-33 144.8 86 72.1
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 6.8e-33 144.1 134 57.5
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 9.8e-32 140.2 80 82.5
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.5e-27 126.3 117 59.0
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.3e-25 119.0 58 94.8
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.0e-24 115.9 116 56.9
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 4.9e-23 111.3 104 49.0
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 6.4e-23 110.9 117 55.6
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.4e-22 109.8 102 60.8
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 1.4e-22 109.8 102 60.8
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.4e-22 109.8 72 62.5
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 4.6e-21 104.8 112 48.2
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 5.9e-21 104.4 89 52.8
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 7.8e-21 104.0 111 46.8
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.8e-18 95.5 110 46.4
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 8.0e-18 94.0 101 42.6
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 3.1e-17 92.0 57 75.4
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 3.4e-16 88.6 47 78.7
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.3e-15 86.7 82 52.4
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 4.0e-09 65.1 50 56.0
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 2.9e-07 58.9 37 75.7


User provided reference genes

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