Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.0e-99 365.2 180 100.0
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.9e-90 335.9 181 91.7
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 7.4e-90 334.0 180 90.0
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 2.8e-89 332.0 178 90.4
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 3.1e-88 328.6 180 88.3
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 3.1e-88 328.6 181 87.8
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 6.9e-88 327.4 179 88.3
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 6.9e-88 327.4 181 87.3
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.2e-87 326.6 180 87.2
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 1.5e-87 326.2 181 87.3
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 2.0e-87 325.9 179 87.7
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 2.0e-87 325.9 181 86.7
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.4e-87 325.1 181 87.8
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 4.5e-87 324.7 179 86.6
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 4.5e-87 324.7 179 86.6
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 9.9e-87 323.6 180 85.6
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 9.9e-87 323.6 179 87.7
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.3e-86 323.2 181 86.7
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 2.2e-86 322.4 181 85.6
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 2.2e-86 322.4 181 86.7
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 3.8e-86 321.6 181 85.6
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 4.9e-86 321.2 182 85.7
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 4.9e-86 321.2 202 79.7
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.1e-85 320.1 181 85.1
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.1e-85 320.1 179 85.5
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.4e-85 319.7 180 85.6
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.4e-85 319.7 181 87.3
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.4e-85 319.7 181 85.6
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.9e-85 319.3 181 87.3
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 3.2e-85 318.5 174 87.9
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 4.2e-85 318.2 181 85.6
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 4.2e-85 318.2 179 84.9
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 7.1e-85 317.4 181 85.1
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 9.3e-85 317.0 171 87.7
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 9.3e-85 317.0 180 85.0
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 9.3e-85 317.0 180 85.0
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.1e-84 315.8 181 84.5
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.7e-84 315.5 181 84.0
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 2.7e-84 315.5 180 86.1
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 2.7e-84 315.5 181 84.0
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 4.6e-84 314.7 181 85.6
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 6.0e-84 314.3 169 89.9
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 3.0e-83 312.0 171 86.5
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 3.9e-83 311.6 181 82.9
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 6.7e-83 310.8 181 83.4
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 6.7e-83 310.8 167 89.8
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 8.7e-83 310.5 181 83.4
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 1.1e-82 310.1 182 81.3
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 1.5e-82 309.7 176 85.2
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 5.6e-82 307.8 176 85.8
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 5.6e-82 307.8 176 85.8
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 7.4e-82 307.4 176 86.4
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 7.4e-82 307.4 180 84.4
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 7.4e-82 307.4 181 84.5
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 9.6e-82 307.0 181 82.9
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.3e-81 306.6 179 82.1
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.6e-81 306.2 174 85.1
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 2.8e-81 305.4 180 82.2
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 2.8e-81 305.4 180 85.6
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 2.8e-81 305.4 168 89.9
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 2.8e-81 305.4 178 84.3
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 3.7e-81 305.1 174 84.5
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 3.7e-81 305.1 181 81.8
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 3.7e-81 305.1 181 82.3
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 4.8e-81 304.7 180 83.3
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 4.8e-81 304.7 178 84.3
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 4.8e-81 304.7 176 85.2
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 6.2e-81 304.3 176 84.1
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 8.1e-81 303.9 180 83.3
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.1e-80 303.5 181 78.5
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 1.1e-80 303.5 167 89.8
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.4e-80 303.1 181 78.5
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.8e-80 302.8 181 81.8
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 4.0e-80 301.6 178 83.7
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 5.3e-80 301.2 181 80.1
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 5.3e-80 301.2 178 83.1
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 5.3e-80 301.2 180 82.2
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 5.3e-80 301.2 181 80.7
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 9.0e-80 300.4 182 83.0
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 9.0e-80 300.4 182 83.0
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.2e-79 300.1 181 80.1
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 2.0e-79 299.3 177 84.2
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 2.0e-79 299.3 183 80.3
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 2.6e-79 298.9 181 79.0
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 3.4e-79 298.5 181 79.0
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 5.8e-79 297.7 181 79.0
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 7.6e-79 297.4 181 79.6
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 1.0e-78 297.0 181 79.0
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 1.0e-78 297.0 181 79.0
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 1.0e-78 297.0 182 79.1
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 1.0e-78 297.0 182 79.1
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.3e-78 296.6 174 82.8
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 2.2e-78 295.8 170 84.1
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 2.9e-78 295.4 176 79.5
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 3.8e-78 295.0 181 79.0
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 3.8e-78 295.0 181 79.0
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 3.8e-78 295.0 169 84.0
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 4.9e-78 294.7 175 80.0
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 1.1e-77 293.5 181 78.5
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 1.4e-77 293.1 224 70.1
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 1.4e-77 293.1 181 79.6
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.9e-77 292.7 181 75.7
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 2.5e-77 292.4 182 78.0
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 3.2e-77 292.0 182 78.0
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 3.2e-77 292.0 181 79.0
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 9.3e-77 290.4 182 77.5
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 9.3e-77 290.4 181 78.5
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 1.6e-76 289.7 170 80.6
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.6e-76 289.7 169 84.6
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 2.1e-76 289.3 182 77.5
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 4.6e-76 288.1 167 86.2
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 5.1e-75 284.6 181 76.8
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.5e-74 283.1 161 85.7
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.5e-74 283.1 179 79.9
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 1.9e-74 282.7 177 79.1
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 2.5e-74 282.3 180 77.8
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 3.3e-74 282.0 180 79.4
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 7.4e-74 280.8 177 79.7
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 2.1e-73 279.3 169 80.5
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 2.1e-73 279.3 168 80.4
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 4.8e-73 278.1 252 60.7
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 2.4e-72 275.8 168 79.8
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 3.1e-72 275.4 168 79.2
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 2.6e-71 272.3 149 88.6
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 5.0e-70 268.1 167 75.4
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 3.2e-69 265.4 181 71.3
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.6e-68 263.1 168 78.6
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 4.6e-68 261.5 178 69.7
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 9.7e-66 253.8 147 84.4
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 4.1e-64 248.4 180 71.7
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 2.2e-62 242.7 165 70.9
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 2.5e-61 239.2 174 63.8
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 3.2e-61 238.8 179 64.8
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.1e-58 230.3 173 63.6
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 1.2e-47 193.7 167 58.1
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 1.6e-47 193.4 134 71.6
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 3.8e-46 188.7 171 60.2
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 5.5e-45 184.9 99 89.9
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 9.1e-40 167.5 101 85.1
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.2e-36 157.1 115 69.6
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 7.0e-32 141.4 80 86.2
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 3.2e-29 132.5 182 39.0
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.6e-28 130.2 169 39.6
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 8.0e-28 127.9 75 80.0
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 8.0e-28 127.9 75 80.0
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.0e-27 125.6 69 85.5
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.5e-21 107.1 57 87.7
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 2.5e-21 106.3 100 58.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 7.3e-21 104.8 54 90.7
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 8.0e-20 101.3 51 94.1
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 2.6e-18 96.3 165 35.2
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 1.3e-17 94.0 62 72.6
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 8.3e-17 91.3 165 33.9
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 1.1e-16 90.9 83 61.4
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 4.3e-13 79.0 89 49.4
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 1.8e-11 73.6 45 77.8
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 3.1e-11 72.8 51 72.5
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 5.2e-11 72.0 37 91.9
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 8.9e-11 71.2 87 48.3
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 7.5e-10 68.2 38 89.5
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 3.7e-09 65.9 50 66.0
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 1.1e-08 64.3 35 82.9
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 4.1e-08 62.4 64 53.1
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 1.6e-07 60.5 33 84.8
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 4.6e-07 58.9 38 73.7
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 4.6e-07 58.9 38 73.7


User provided reference genes

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