Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 4.0e-290 1000.7 510 100.0
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 1.7e-192 676.4 531 70.8
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 5.2e-189 664.8 531 69.9
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.7e-187 659.8 531 69.3
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 1.0e-184 650.6 531 69.5
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 1.7e-184 649.8 532 67.5
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 3.1e-178 629.0 531 66.3
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 1.3e-176 623.6 494 70.0
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 4.7e-174 615.1 533 64.5
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 6.1e-174 614.8 531 64.8
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 2.0e-172 609.8 531 65.2
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 7.5e-172 607.8 532 63.2
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 9.8e-172 607.4 531 64.0
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 9.8e-172 607.4 545 62.4
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 7.0e-170 601.3 531 63.3
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 1.3e-168 597.0 531 64.2
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 2.9e-168 595.9 531 63.8
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 3.8e-168 595.5 531 62.7
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 3.8e-168 595.5 531 64.4
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 5.0e-168 595.1 532 63.7
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 6.5e-168 594.7 533 64.5
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 4.0e-165 585.5 532 62.0
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 5.2e-165 585.1 521 62.8
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 5.7e-164 581.6 532 61.7
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 9.8e-164 580.9 532 61.8
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 9.2e-162 574.3 521 62.4
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 1.7e-160 570.1 532 60.3
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 1.7e-160 570.1 532 60.3
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 5.0e-160 568.5 532 60.2
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 1.9e-159 566.6 532 60.0
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 9.5e-159 564.3 532 60.0
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 1.6e-158 563.5 534 60.3
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.0e-157 560.8 532 59.6
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 1.4e-157 560.5 532 59.4
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 5.2e-157 558.5 532 59.6
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 1.5e-156 557.0 531 60.1
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 7.5e-156 554.7 532 59.0
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 2.9e-155 552.7 538 59.7
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 6.4e-155 551.6 532 58.8
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 9.2e-154 547.7 532 58.5
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 2.0e-153 546.6 532 60.3
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 7.8e-153 544.7 532 58.8
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 2.3e-152 543.1 532 58.8
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 2.3e-152 543.1 532 61.3
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 3.0e-152 542.7 530 58.7
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 3.3e-151 539.3 533 58.7
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 4.3e-151 538.9 531 58.9
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 4.3e-151 538.9 532 57.9
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 5.6e-151 538.5 542 57.7
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 1.6e-150 537.0 573 55.1
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 2.8e-150 536.2 532 59.0
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 1.4e-149 533.9 532 58.3
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 1.8e-149 533.5 535 59.1
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 3.1e-149 532.7 540 57.0
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 5.2e-149 531.9 534 57.9
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 8.9e-149 531.2 532 59.6
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 5.8e-148 528.5 541 57.1
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 7.5e-148 528.1 533 59.3
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 7.5e-148 528.1 493 61.9
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 9.8e-148 527.7 539 57.5
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 1.7e-147 526.9 554 57.4
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 9.2e-146 521.2 493 62.1
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 6.6e-144 515.0 529 57.5
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 1.2e-142 510.8 541 57.3
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 8.1e-142 508.1 572 54.2
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 1.0e-136 491.1 546 53.5
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 1.2e-134 484.2 553 52.3
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 1.8e-133 480.3 528 54.2
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 7.6e-132 474.9 536 53.5
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 3.5e-129 466.1 536 53.5
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 3.5e-129 466.1 541 51.8
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 7.8e-129 464.9 540 52.6
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 1.2e-126 457.6 392 66.1
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 6.2e-126 455.3 577 49.4
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 2.4e-125 453.4 544 54.4
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 5.2e-125 452.2 531 52.2
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 9.9e-124 448.0 541 52.7
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 1.3e-123 447.6 608 48.5
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 1.3e-123 447.6 608 48.4
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 4.2e-122 442.6 541 52.3
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 4.2e-122 442.6 540 51.9
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 1.2e-121 441.0 405 62.0
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 2.1e-121 440.3 559 51.0
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 4.6e-121 439.1 542 52.0
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 6.0e-121 438.7 540 51.5
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 1.0e-120 438.0 526 51.7
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 3.0e-120 436.4 545 49.5
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.1e-119 434.5 484 55.0
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 4.3e-119 432.6 528 51.7
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 7.3e-119 431.8 408 60.0
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.8e-117 427.2 553 48.6
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 1.8e-117 427.2 535 49.7
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 1.2e-116 424.5 495 52.5
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 2.0e-116 423.7 550 50.0
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 5.8e-116 422.2 586 46.8
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 1.7e-115 420.6 544 51.7
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 6.4e-115 418.7 553 47.9
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 9.3e-114 414.8 553 49.5
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 4.3e-111 406.0 534 50.9
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 5.6e-111 405.6 553 48.1
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 8.1e-110 401.7 552 48.7
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.4e-109 400.2 365 63.8
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 3.8e-107 392.9 551 48.3
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 1.1e-106 391.3 552 47.8
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 1.0e-99 368.2 497 48.7
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 5.5e-98 362.5 383 56.1
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 3.9e-96 356.3 268 73.5
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 3.7e-70 270.0 251 60.2
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 8.0e-65 252.3 193 68.9
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 1.2e-63 248.4 193 67.9
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 1.5e-63 248.1 174 73.0
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 8.2e-62 242.3 412 40.0
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 4.1e-61 240.0 257 55.3
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 1.2e-60 238.4 192 66.7
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 2.1e-57 227.6 265 52.5
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 3.1e-53 213.8 403 37.7
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 1.7e-51 208.0 534 34.3
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.1e-41 174.5 516 32.0
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 2.8e-41 174.1 524 29.0
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 4.6e-36 156.8 488 30.3
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 7.8e-36 156.0 197 51.3
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 1.1e-34 152.1 205 45.4
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 1.7e-30 138.3 184 48.9
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 2.2e-30 137.9 200 46.0
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 3.7e-30 137.1 159 50.3
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 1.4e-29 135.2 220 42.7
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 1.0e-27 129.0 126 60.3
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 8.1e-25 119.4 545 28.3
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 6.0e-20 103.2 81 66.7
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 8.6e-19 99.4 115 47.8
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 2.8e-17 94.4 495 25.9
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 5.1e-11 73.6 91 52.7
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 1.5e-10 72.0 41 78.0


User provided reference genes

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