Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026368 Camellia sinensis var. sinensis HOM05D005100 ORTHO05D005607 5.5e-68 260.8 126 100.0
Cpa.g.sc276.5 Carica papaya HOM05D005100 ORTHO05D005607 1.4e-63 246.1 126 93.7
QL12p012809 Quercus lobata HOM05D005100 ORTHO05D005607 4.1e-63 244.6 125 94.4
Thecc.03G254700 Theobroma cacao HOM05D005100 ORTHO05D005607 7.0e-63 243.8 126 92.1
Lalb_Chr05g0225721 Lupinus albus HOM05D005100 ORTHO05D005607 9.1e-63 243.4 126 92.9
MD17G1263200 Malus domestica HOM05D005100 ORTHO05D005607 1.2e-62 243.0 126 92.9
Lalb_Chr09g0334171 Lupinus albus HOM05D005100 ORTHO05D005607 1.6e-62 242.7 126 92.1
Gohir.D12G221900 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.0e-62 242.3 126 91.3
Eucgr.E00445 Eucalyptus grandis HOM05D005100 ORTHO05D005607 2.7e-62 241.9 126 92.9
Gohir.D08G190100 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.5e-62 241.5 126 92.1
PGR042G3212 Punica granatum HOM05D005100 ORTHO05D005607 3.5e-62 241.5 126 92.1
Manes.01G079000 Manihot esculenta HOM05D005100 ORTHO05D005607 4.5e-62 241.1 126 92.1
Cfa012751 Carpinus fangiana HOM05D005100 ORTHO05D005607 7.7e-62 240.4 126 92.9
Haze_07879 Corylus avellana HOM05D005100 ORTHO05D005607 7.7e-62 240.4 126 92.9
Prupe.3G111600 Prunus persica HOM05D005100 ORTHO05D005607 7.7e-62 240.4 126 92.1
Migut.A00959 Erythranthe guttata HOM05D005100 ORTHO05D005607 1.0e-61 240.0 126 92.1
Glyma.17G140500 Glycine max HOM05D005100 ORTHO05D005607 1.0e-61 240.0 126 90.5
Nn1g01053 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.0e-61 240.0 126 90.5
MSTRG.12083 Avicennia marina HOM05D005100 ORTHO05D005607 1.3e-61 239.6 126 90.5
Duzib084G0333 Durio zibethinus HOM05D005100 ORTHO05D005607 1.3e-61 239.6 126 91.3
Rhsim07G0107000 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.3e-61 239.6 125 91.2
TAR374G1281 Trochodendron aralioides HOM05D005100 ORTHO05D005607 1.3e-61 239.6 126 92.1
Nn6g34007 Nelumbo nucifera HOM05D005100 ORTHO05D005607 1.7e-61 239.2 126 90.5
Rhsim07G0106400 Rhododendron simsii HOM05D005100 ORTHO05D005607 1.7e-61 239.2 126 91.3
CiPaw.11G152200 Carya illinoinensis HOM05D005100 ORTHO05D005607 2.3e-61 238.8 125 89.6
Potri.001G122200 Populus trichocarpa HOM05D005100 ORTHO05D005607 2.3e-61 238.8 126 91.3
Gohir.A12G219800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 2.9e-61 238.4 124 91.1
Gorai.008G237800 Gossypium raimondii HOM05D005100 ORTHO05D005607 2.9e-61 238.4 126 89.7
arahy.Tifrunner.gnm1.ann1.1R27RR Arachis hypogaea HOM05D005100 ORTHO05D005607 3.8e-61 238.0 126 90.5
Gohir.A08G171800 Gossypium hirsutum HOM05D005100 ORTHO05D005607 3.8e-61 238.0 126 91.3
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 3.8e-61 238.0 126 89.7
THA.LOC104806732 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 5.0e-61 237.7 126 89.7
Glyma.05G058000 Glycine max HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 89.7
Manes.02G037900 Manihot esculenta HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 89.7
SalBow4G2670 Salvia bowleyana HOM05D005100 ORTHO05D005607 6.6e-61 237.3 126 91.3
Duzib205G1156 Durio zibethinus HOM05D005100 ORTHO05D005607 8.6e-61 236.9 124 91.1
Phvul.003G219300 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 8.6e-61 236.9 126 89.7
RcHm_v2.0_Chr2g0131201 Rosa chinensis HOM05D005100 ORTHO05D005607 1.5e-60 236.1 126 90.5
CAN.G1218.6 Capsicum annuum HOM05D005100 ORTHO05D005607 2.5e-60 235.3 126 88.9
Hma1.2p1_1414F.1_g281930 Hydrangea macrophylla HOM05D005100 ORTHO05D005607 2.5e-60 235.3 127 92.1
Medtr4g101140 Medicago truncatula HOM05D005100 ORTHO05D005607 2.5e-60 235.3 126 88.9
TWI60G0435 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 2.5e-60 235.3 127 90.6
Gorai.004G200300 Gossypium raimondii HOM05D005100 ORTHO05D005607 3.3e-60 235.0 127 89.8
TWI15G0944 Tripterygium wilfordii HOM05D005100 ORTHO05D005607 3.3e-60 235.0 127 89.8
FvH4_6g27850 Fragaria vesca HOM05D005100 ORTHO05D005607 4.2e-60 234.6 126 89.7
FAN02G0882 Fragaria x ananassa HOM05D005100 ORTHO05D005607 4.2e-60 234.6 126 89.7
SGA_v2.0_scaffold146G36159 Striga asiatica HOM05D005100 ORTHO05D005607 4.2e-60 234.6 126 88.9
Ca_21953_v3 Cicer arietinum L. HOM05D005100 ORTHO05D005607 5.6e-60 234.2 126 88.1
Psat4g070000 Pisum sativum HOM05D005100 ORTHO05D005607 9.5e-60 233.4 126 88.1
Sed0015074 Sechium edule HOM05D005100 ORTHO05D005607 9.5e-60 233.4 125 87.2
Peaxi162Scf00002g01216 Petunia axillaris HOM05D005100 ORTHO05D005607 1.2e-59 233.0 126 88.9
MELO3C013951.2 Cucumis melo HOM05D005100 ORTHO05D005607 1.6e-59 232.6 125 86.4
CsaV3_3G002850 Cucumis sativus L. HOM05D005100 ORTHO05D005607 1.6e-59 232.6 125 86.4
FAN05G1737 Fragaria x ananassa HOM05D005100 ORTHO05D005607 1.6e-59 232.6 125 88.8
Solyc08g078860.4 Solanum lycopersicum HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 88.1
Sopen08g027330 Solanum pennellii HOM05D005100 ORTHO05D005607 1.6e-59 232.6 126 88.1
arahy.Tifrunner.gnm1.ann1.CZL3S8 Arachis hypogaea HOM05D005100 ORTHO05D005607 2.1e-59 232.3 124 88.7
Phvul.001G061600 Phaseolus vulgaris HOM05D005100 ORTHO05D005607 2.1e-59 232.3 126 88.1
A02p31440 Brassica napus HOM05D000285 ORTHO05D005607 2.8e-59 231.9 126 88.1
BraA02t08146Z Brassica rapa HOM05D005100 ORTHO05D005607 2.8e-59 231.9 126 88.1
FAN14G3965 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.8e-59 231.9 125 88.8
Aa31LG9G5470 Aethionema arabicum HOM05D005100 ORTHO05D005607 6.1e-59 230.7 126 88.1
BcaC03g16973 Brassica carinata HOM05D005100 ORTHO05D005607 8.0e-59 230.3 126 88.1
C02p48770 Brassica napus HOM05D000285 ORTHO05D005607 8.0e-59 230.3 126 88.1
BolC2t10971H Brassica oleracea HOM05D005100 ORTHO05D005607 8.0e-59 230.3 126 88.1
Ciclev10022867m.g Citrus clementina HOM05D005100 ORTHO05D005607 8.0e-59 230.3 126 88.9
Lsat_1_v5_gn_6_2981 Lactuca sativa HOM05D005100 ORTHO05D005607 8.0e-59 230.3 126 88.1
Hund14589 Selenicereus undatus HOM05D005100 ORTHO05D005607 8.0e-59 230.3 125 85.6
Cc08_g12730 Coffea canephora HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 86.5
Nitab4.5_0007493g0020 Nicotiana tabacum HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 88.1
unitig_736.g22564 Utricularia gibba HOM05D005100 ORTHO05D005607 1.0e-58 229.9 126 87.3
ClCG10G002830 Citrullus lanatus HOM05D005100 ORTHO05D005607 1.4e-58 229.6 140 80.0
AL8G10400 Arabidopsis lyrata HOM05D005100 ORTHO05D005607 1.8e-58 229.2 126 88.9
C07p31220 Brassica napus HOM05D000285 ORTHO05D005607 3.0e-58 228.4 126 88.9
Thhalv10001074m.g Eutrema salsugineum HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 88.1
Lj2C215G2 Lonicera japonica HOM05D005100 ORTHO05D005607 3.0e-58 228.4 126 89.7
Sp2g12300 Schrenkiella parvula HOM05D005100 ORTHO05D005607 4.0e-58 228.0 126 87.3
AT5G47570 Arabidopsis thaliana HOM05D005100 ORTHO05D005607 5.2e-58 227.6 126 88.1
CANSAT21G2488 Cannabis sativa HOM05D005100 ORTHO05D005607 5.2e-58 227.6 126 87.3
CARHR173780 Cardamine hirsuta HOM05D005100 ORTHO05D005607 6.8e-58 227.3 126 87.3
Nitab4.5_0000312g0250 Nicotiana tabacum HOM05D005100 ORTHO05D005607 6.8e-58 227.3 126 87.3
BcaC04g21614 Brassica carinata HOM05D005100 ORTHO05D005607 8.9e-58 226.9 126 88.1
A06p44960 Brassica napus HOM05D005100 ORTHO05D005607 8.9e-58 226.9 126 88.1
A09p23130 Brassica napus HOM05D000285 ORTHO05D005607 8.9e-58 226.9 126 88.1
BolC7t43663H Brassica oleracea HOM05D005100 ORTHO05D005607 8.9e-58 226.9 126 88.1
MD09G1234000 Malus domestica HOM05D005100 ORTHO05D005607 8.9e-58 226.9 126 85.7
Atru.chr9.1362 Acer truncatum HOM05D005100 ORTHO05D005607 1.2e-57 226.5 126 88.1
BcaC06g34239 Brassica carinata HOM05D000285 ORTHO05D005607 1.2e-57 226.5 126 87.3
HanXRQChr13g0396371 Helianthus annuus HOM05D005100 ORTHO05D005607 1.2e-57 226.5 126 86.5
BcaB07g30770 Brassica carinata HOM05D005100 ORTHO05D005607 1.5e-57 226.1 126 87.3
BcaC06g31372 Brassica carinata HOM05D005100 ORTHO05D005607 1.5e-57 226.1 126 87.3
BraA06t27367Z Brassica rapa HOM05D005100 ORTHO05D005607 1.5e-57 226.1 126 87.3
Carub.0008s0021 Capsella rubella HOM05D005100 ORTHO05D005607 5.7e-57 224.2 126 87.3
Aqoxy7G00738 Aquilegia oxysepala HOM05D005100 ORTHO05D005607 1.1e-55 219.9 126 83.3
BcaC06g31367 Brassica carinata HOM05D005100 ORTHO05D005607 4.1e-55 218.0 127 85.8
Lj4g0006403 Lotus japonicus HOM05D005100 ORTHO05D005607 4.1e-55 218.0 126 83.3
PSO017G3938 Papaver somniferum HOM05D005100 ORTHO05D005607 4.1e-55 218.0 126 83.3
PSO478G0216 Papaver somniferum HOM05D005100 ORTHO05D005607 7.0e-55 217.2 126 83.3
CDE11G0582 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 1.2e-54 216.5 126 82.5
ATR0105G007 Amborella trichopoda HOM05D005100 ORTHO05D005607 1.6e-54 216.1 126 81.0
ECA233G3117 Erigeron canadensis HOM05D005100 ORTHO05D005607 7.8e-54 213.8 114 87.7
CiPaw.12G108400 Carya illinoinensis HOM05D005100 ORTHO05D005607 1.3e-53 213.0 126 83.3
Actinidia02116 Actinidia chinensis HOM05D005100 ORTHO05D005607 6.6e-53 210.7 124 82.3
Oeu011653.1 Olea europaea HOM05D005100 ORTHO05D005607 3.6e-51 204.9 107 92.5
Dinv21616 Davidia involucrata HOM05D005100 ORTHO05D005607 4.7e-51 204.5 107 92.5
HPP92_012813 Vanilla planifolia HOM05D005100 ORTHO05D005607 4.7e-51 204.5 126 77.8
THA.LOC104798464 Tarenaya hassleriana HOM05D005100 ORTHO05D005607 6.2e-51 204.1 112 86.6
Oeu006279.1 Olea europaea HOM05D005100 ORTHO05D005607 8.0e-51 203.8 107 91.6
COL.COLO4_37195 Corchorus olitorius HOM05D005100 ORTHO05D005607 1.0e-50 203.4 107 91.6
Haze_07877 Corylus avellana HOM05D005100 ORTHO05D005607 1.0e-50 203.4 107 92.5
vmacro14093 Vaccinium macrocarpon HOM05D005100 ORTHO05D005607 4.0e-50 201.4 107 91.6
Os10g0551600 Oryza sativa ssp. japonica HOM05D005100 ORTHO05D005607 1.2e-49 199.9 126 73.0
Sabra01G0094100 Salix brachista HOM05D005100 ORTHO05D005607 1.2e-49 199.9 107 90.7
Zm00001eb391700 Zea mays HOM05D005100 ORTHO05D005607 3.4e-49 198.4 126 74.6
MBI11_g37068_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 5.8e-49 197.6 107 86.9
PGSC0003DMG400004750 Solanum tuberosum HOM05D005100 ORTHO05D005607 2.9e-48 195.3 107 87.9
MBI02_g00644_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 4.9e-48 194.5 107 85.0
Actinidia05198 Actinidia chinensis HOM05D005100 ORTHO05D005607 6.4e-48 194.1 93 93.5
Dinv39123 Davidia involucrata HOM05D005100 ORTHO05D005607 6.4e-48 194.1 94 93.6
Sed0017508 Sechium edule HOM05D005100 ORTHO05D005607 3.2e-47 191.8 107 83.2
AUR62007498 Chenopodium quinoa HOM05D005100 ORTHO05D005607 4.1e-47 191.4 104 88.5
Ah.12g056670 Amaranthus hybridus HOM05D005100 ORTHO05D005607 1.2e-46 189.9 94 91.5
BolC9t55849H Brassica oleracea HOM05D000285 ORTHO05D005607 2.7e-46 188.7 112 83.9
Zm00001eb023020 Zea mays HOM05D005100 ORTHO05D005607 3.5e-46 188.3 126 69.8
BraA09t37916Z Brassica rapa HOM05D000285 ORTHO05D005607 1.0e-45 186.8 107 86.9
DCAR_027789 Daucus carota HOM05D005100 ORTHO05D005607 1.3e-45 186.4 112 81.2
C09p29860 Brassica napus HOM05D000285 ORTHO05D005607 3.0e-45 185.3 112 82.1
PGSC0003DMG400004799 Solanum tuberosum HOM05D005100 ORTHO05D005607 1.9e-44 182.6 139 69.1
SEGI_05699 Sequoiadendron giganteum HOM05D005100 ORTHO05D005607 4.4e-41 171.4 122 66.4
COL.COLO4_37193 Corchorus olitorius HOM05D005100 ORTHO05D005607 4.1e-39 164.9 126 69.0
MBI02_g36452_MAGBIO Magnolia biondii HOM05D005100 ORTHO05D005607 5.4e-39 164.5 124 67.7
CDE02G1099 Ceratophyllum demersum HOM05D005100 ORTHO05D005607 8.6e-37 157.1 141 59.6
EL10Ac5g13047 Beta vulgaris HOM05D005100 ORTHO05D005607 3.3e-36 155.2 126 65.9
GSVIVG01001301001 Vitis vinifera HOM05D005100 ORTHO05D005607 5.6e-36 154.5 75 90.7
Pp3c20_8820 Physcomitrium patens HOM05D005100 ORTHO05D005607 1.6e-35 152.9 105 63.8
SalBow8G2639 Salvia bowleyana HOM05D005100 ORTHO05D005607 4.6e-30 134.8 75 89.3
RcHm_v2.0_Chr1g0345201 Rosa chinensis HOM05D005100 ORTHO05D005607 7.8e-30 134.0 79 78.5
Sc22g0000770 Simmondsia chinensis HOM05D005100 ORTHO05D005607 1.3e-29 133.3 79 81.0
Mapoly0086s0019 Marchantia polymorpha HOM05D005100 ORTHO05D005607 5.1e-29 131.3 124 54.0
FAN05G0157 Fragaria x ananassa HOM05D005100 ORTHO05D005607 8.1e-27 124.0 91 69.2
Hund11615 Selenicereus undatus HOM05D005100 ORTHO05D005607 8.1e-27 124.0 126 54.0
RcHm_v2.0_Chr2g0112371 Rosa chinensis HOM05D005100 ORTHO05D005607 6.8e-26 120.9 65 86.2
FAN09G2413 Fragaria x ananassa HOM05D005100 ORTHO05D005607 2.0e-25 119.4 91 65.9
RcHm_v2.0_Chr2g0109601 Rosa chinensis HOM05D005100 ORTHO05D005607 2.6e-25 119.0 66 83.3
FvH4_6g09560 Fragaria vesca HOM05D005100 ORTHO05D005607 3.4e-25 118.6 93 67.7
TWI81G0033 Tripterygium wilfordii HOM05D000001 ORTHO05D011365 2.9e-24 115.5 93 63.4
AagrBONN_evm.TU.Sc2ySwM_117.677 Anthoceros agrestis HOM05D005100 ORTHO05D005607 6.4e-24 114.4 91 54.9
RcHm_v2.0_Chr6g0244011 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-23 113.6 75 72.0
RcHm_v2.0_Chr1g0326801 Rosa chinensis HOM05D005100 ORTHO05D005607 1.0e-21 107.1 97 59.8
RcHm_v2.0_Chr4g0420451 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-18 97.1 75 68.0
RcHm_v2.0_Chr5g0051271 Rosa chinensis HOM05D005100 ORTHO05D005607 1.1e-18 97.1 72 69.4
MCO13G524 Micromonas commoda HOM05D005100 ORTHO05D005607 1.7e-16 89.7 94 48.9
CBR_g50946 Chara braunii HOM05D005100 ORTHO05D005607 4.9e-16 88.2 79 51.9
Nitab4.5_0003531g0010 Nicotiana tabacum HOM05D005100 ORTHO05D005607 4.2e-15 85.1 43 90.7
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 3.4e-09 65.5 45 75.6
QL12p012843 Quercus lobata HOM05D005100 ORTHO05D005607 6.4e-08 61.2 42 78.6
SMO119G0354 Selaginella moellendorffii HOM05D005100 ORTHO05D005607 5.5e-07 58.2 97 37.1


User provided reference genes

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