Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 2.4e-172 608.6 285 100.0
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 5.0e-157 557.8 285 90.5
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 1.2e-155 553.1 285 89.5
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 7.9e-155 550.4 288 90.3
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 1.3e-154 549.7 284 88.4
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 3.3e-153 545.0 285 87.4
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 3.3e-153 545.0 285 87.4
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 2.2e-152 542.3 285 87.4
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 4.8e-152 541.2 284 87.0
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 3.1e-151 538.5 289 87.2
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 4.1e-151 538.1 284 87.7
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 5.3e-151 537.7 285 86.0
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 6.9e-151 537.3 285 85.6
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 9.1e-151 537.0 284 87.3
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 9.1e-151 537.0 285 85.6
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 9.1e-151 537.0 285 86.0
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 1.5e-150 536.2 286 85.7
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 2.0e-150 535.8 284 87.0
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 2.0e-150 535.8 284 87.0
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 2.0e-150 535.8 285 86.3
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 5.9e-150 534.3 285 86.3
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 5.9e-150 534.3 282 86.5
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.3e-149 533.1 287 85.4
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 1.3e-149 533.1 285 84.9
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 1.7e-149 532.7 285 86.7
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 2.2e-149 532.3 283 85.9
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 3.8e-149 531.6 285 86.0
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 6.5e-149 530.8 285 86.0
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 8.5e-149 530.4 284 84.5
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 1.4e-148 529.6 284 84.5
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.4e-148 529.6 285 85.6
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 1.9e-148 529.3 282 86.5
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 1.9e-148 529.3 285 84.9
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 2.5e-148 528.9 285 85.3
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 2.5e-148 528.9 285 84.9
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 4.2e-148 528.1 285 84.9
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 5.5e-148 527.7 285 84.6
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.2e-147 526.6 285 85.3
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 1.2e-147 526.6 285 85.3
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 1.2e-147 526.6 285 84.2
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.6e-147 526.2 285 84.6
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.6e-147 526.2 282 86.2
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 4.7e-147 524.6 290 84.5
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 4.7e-147 524.6 285 84.2
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 4.7e-147 524.6 285 83.9
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 6.1e-147 524.2 285 84.2
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 1.0e-146 523.5 284 84.2
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 1.4e-146 523.1 282 84.4
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 3.0e-146 521.9 284 84.5
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 5.1e-146 521.2 284 83.1
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 5.1e-146 521.2 282 85.5
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 8.8e-146 520.4 284 84.2
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 1.5e-145 519.6 283 83.7
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.6e-145 518.8 286 83.2
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 2.6e-145 518.8 285 83.9
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 9.7e-145 516.9 281 83.3
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 9.7e-145 516.9 282 83.7
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 1.7e-144 516.2 284 82.0
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 2.2e-144 515.8 282 85.1
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 4.8e-144 514.6 284 82.0
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 8.2e-144 513.8 284 82.4
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 1.8e-143 512.7 283 82.3
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 3.1e-143 511.9 286 83.2
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 5.3e-143 511.1 285 83.2
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 6.9e-143 510.8 282 83.7
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 1.5e-142 509.6 284 82.0
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 1.5e-142 509.6 279 84.9
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 2.0e-142 509.2 284 82.7
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 2.6e-142 508.8 285 81.8
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 4.5e-142 508.1 279 83.5
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 5.9e-142 507.7 285 80.7
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 1.3e-141 506.5 284 82.7
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 2.2e-141 505.8 273 83.2
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 8.5e-141 503.8 286 80.8
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.4e-140 503.1 302 77.2
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 1.4e-140 503.1 283 81.6
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 2.5e-140 502.3 271 84.9
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 2.5e-140 502.3 284 81.7
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 4.2e-140 501.5 285 81.8
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 1.6e-139 499.6 285 81.8
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 4.7e-139 498.0 298 78.9
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 4.7e-139 498.0 285 80.4
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 6.1e-139 497.7 285 81.1
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 1.4e-138 496.5 285 80.0
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 1.5e-137 493.0 279 79.9
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 2.0e-137 492.7 280 81.8
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 2.0e-137 492.7 285 79.6
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 3.3e-137 491.9 285 80.4
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 4.4e-137 491.5 285 79.6
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 5.7e-137 491.1 285 78.9
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 5.7e-137 491.1 285 79.6
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 5.7e-137 491.1 285 78.9
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 2.2e-136 489.2 278 80.6
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 2.2e-136 489.2 284 77.8
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 6.3e-136 487.6 285 80.0
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 1.1e-135 486.9 286 80.8
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 1.4e-135 486.5 286 80.4
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 1.4e-135 486.5 286 80.8
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 1.4e-135 486.5 286 80.8
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 1.8e-135 486.1 282 79.1
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 5.3e-135 484.6 281 76.5
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 9.1e-135 483.8 285 79.3
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 1.2e-134 483.4 284 78.5
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 2.0e-134 482.6 330 70.0
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 4.0e-130 468.4 275 76.0
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 1.5e-129 466.5 279 74.9
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 5.3e-127 458.0 284 74.3
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 7.0e-127 457.6 247 85.4
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 1.2e-126 456.8 276 73.9
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 4.2e-124 448.4 275 75.6
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 5.5e-124 448.0 287 76.3
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.3e-120 436.8 236 84.3
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 1.2e-118 430.3 282 69.9
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 1.3e-117 426.8 234 80.3
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 1.3e-112 410.2 225 84.4
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 4.5e-110 401.7 280 65.7
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 6.6e-109 397.9 278 66.2
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 3.6e-107 392.1 196 92.9
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 2.3e-106 389.4 277 65.3
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 6.2e-99 364.8 219 76.3
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 8.6e-93 344.4 289 60.2
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 4.7e-91 338.6 282 56.7
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 2.3e-90 336.3 273 61.2
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 5.2e-82 308.5 171 85.4
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 2.0e-81 306.6 167 85.0
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 1.9e-76 290.0 259 52.5
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 5.3e-66 255.4 275 48.0
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 3.2e-63 246.1 278 47.1
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 7.1e-63 245.0 291 48.1
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 1.6e-62 243.8 231 54.1
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 6.2e-51 205.3 114 78.9
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 1.3e-43 181.0 103 77.7
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 5.7e-20 102.4 78 62.8
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 1.2e-14 84.7 61 62.3
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 4.7e-14 82.8 52 75.0
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 6.3e-11 72.4 56 55.4
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 5.5e-07 59.3 49 61.2


User provided reference genes

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