Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026364 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 2.1e-73 278.9 132 100.0
CSS0024221 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 3.6e-70 268.1 130 96.9
Ciclev10012084m.g Citrus clementina HOM05D001960 ORTHO05D004348 8.1e-70 266.9 130 96.2
Ah.12g065390 Amaranthus hybridus HOM05D001960 ORTHO05D004348 1.4e-69 266.2 130 95.4
FvH4_6g49160 Fragaria vesca HOM05D001960 ORTHO05D004348 1.4e-69 266.2 130 96.2
FAN02G2692 Fragaria x ananassa HOM05D001960 ORTHO05D004348 1.4e-69 266.2 130 96.2
FAN05G5323 Fragaria x ananassa HOM05D001960 ORTHO05D004348 1.4e-69 266.2 130 96.2
FAN14G2932 Fragaria x ananassa HOM05D001960 ORTHO05D004348 1.4e-69 266.2 130 96.2
MD09G1048000 Malus domestica HOM05D001960 ORTHO05D004348 1.4e-69 266.2 130 96.2
MD17G1048200 Malus domestica HOM05D001960 ORTHO05D004348 1.4e-69 266.2 130 96.2
PSO017G2769 Papaver somniferum HOM05D001960 ORTHO05D004348 1.4e-69 266.2 130 96.2
PSO478G2180 Papaver somniferum HOM05D001960 ORTHO05D004348 1.4e-69 266.2 130 96.2
Actinidia34797 Actinidia chinensis HOM05D001960 ORTHO05D004348 1.8e-69 265.8 130 95.4
Actinidia38882 Actinidia chinensis HOM05D001960 ORTHO05D004348 1.8e-69 265.8 130 95.4
Ah.10g031310 Amaranthus hybridus HOM05D001960 ORTHO05D004348 2.4e-69 265.4 130 94.6
HanXRQChr15g0474171 Helianthus annuus HOM05D001960 ORTHO05D004348 2.4e-69 265.4 130 95.4
CSS0022239 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 95.4
DCAR_011153 Daucus carota HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 95.4
DCAR_011154 Daucus carota HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 95.4
Duzib187G1412 Durio zibethinus HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 95.4
Gohir.A07G215700 Gossypium hirsutum HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 95.4
Gohir.A09G022100 Gossypium hirsutum HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 95.4
Gohir.D07G222700 Gossypium hirsutum HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 95.4
Gohir.D09G021300 Gossypium hirsutum HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 95.4
Gorai.001G257000 Gossypium raimondii HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 95.4
Gorai.006G025300 Gossypium raimondii HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 95.4
Prupe.3G271000 Prunus persica HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 95.4
RcHm_v2.0_Chr2g0169031 Rosa chinensis HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 95.4
Hund13234 Selenicereus undatus HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 94.6
Thecc.04G075700 Theobroma cacao HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 95.4
TAR374G0426 Trochodendron aralioides HOM05D001960 ORTHO05D004348 3.1e-69 265.0 130 95.4
Dinv33731 Davidia involucrata HOM05D001960 ORTHO05D004348 4.0e-69 264.6 130 94.6
ECA246G2943 Erigeron canadensis HOM05D001960 ORTHO05D004348 4.0e-69 264.6 130 95.4
EL10Ac2g02943 Beta vulgaris HOM05D001960 ORTHO05D004348 5.2e-69 264.2 130 94.6
AUR62031635 Chenopodium quinoa HOM05D001960 ORTHO05D004348 5.2e-69 264.2 130 94.6
AUR62038866 Chenopodium quinoa HOM05D001960 ORTHO05D004348 5.2e-69 264.2 130 94.6
HanXRQChr17g0547421 Helianthus annuus HOM05D001960 ORTHO05D004348 5.2e-69 264.2 130 94.6
Hma1.2p1_0449F.1_g155170 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 5.2e-69 264.2 130 95.4
Lsat_1_v5_gn_3_102160 Lactuca sativa HOM05D001960 ORTHO05D004348 5.2e-69 264.2 130 94.6
ClCG10G014880 Citrullus lanatus HOM05D001960 ORTHO05D004348 6.9e-69 263.8 130 94.6
MELO3C009887.2 Cucumis melo HOM05D001960 ORTHO05D004348 6.9e-69 263.8 130 94.6
CsaV3_3G041630 Cucumis sativus L. HOM05D001960 ORTHO05D004348 6.9e-69 263.8 130 94.6
Lsat_1_v5_gn_2_88741 Lactuca sativa HOM05D001960 ORTHO05D004348 6.9e-69 263.8 130 94.6
HPP92_006462 Vanilla planifolia HOM05D001960 ORTHO05D004348 6.9e-69 263.8 130 94.6
Medtr7g009590 Medicago truncatula HOM05D001960 ORTHO05D004348 8.9e-69 263.5 130 94.6
Sed0008481 Sechium edule HOM05D001960 ORTHO05D004348 8.9e-69 263.5 130 93.8
SGA_v2.0_scaffold236G43786 Striga asiatica HOM05D001960 ORTHO05D004348 8.9e-69 263.5 130 95.4
SGA_v2.0_scaffold30G12526 Striga asiatica HOM05D001960 ORTHO05D004348 8.9e-69 263.5 130 95.4
Aqoxy3G03291 Aquilegia oxysepala HOM05D001960 ORTHO05D004348 1.2e-68 263.1 130 94.6
Cpa.g.sc14.35 Carica papaya HOM05D001960 ORTHO05D004348 1.2e-68 263.1 130 94.6
Lj2A726T8 Lonicera japonica HOM05D001960 ORTHO05D004348 1.2e-68 263.1 130 95.4
Manes.17G022500 Manihot esculenta HOM05D001960 ORTHO05D004348 1.2e-68 263.1 130 94.6
Manes.17G022600 Manihot esculenta HOM05D001960 ORTHO05D004348 1.2e-68 263.1 130 94.6
SalBow1G4343 Salvia bowleyana HOM05D001960 ORTHO05D004348 1.2e-68 263.1 130 95.4
CANSAT11G2018 Cannabis sativa HOM05D001960 ORTHO05D004348 1.5e-68 262.7 130 94.6
CSS0002033 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 2.0e-68 262.3 129 95.3
unitig_748.g8436 Utricularia gibba HOM05D001960 ORTHO05D004348 2.0e-68 262.3 130 95.4
COL.COLO4_25163 Corchorus olitorius HOM05D001960 ORTHO05D004348 3.4e-68 261.5 130 94.6
Nn1g04484 Nelumbo nucifera HOM05D001960 ORTHO05D004348 4.4e-68 261.2 130 93.1
Psat3g196680 Pisum sativum HOM05D001960 ORTHO05D004348 4.4e-68 261.2 130 93.1
TWI32G1350 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 4.4e-68 261.2 130 94.6
TAR629G1922 Trochodendron aralioides HOM05D001960 ORTHO05D004348 4.4e-68 261.2 130 93.8
arahy.Tifrunner.gnm1.ann1.EZF2RR Arachis hypogaea HOM05D001960 ORTHO05D004348 5.8e-68 260.8 130 93.1
arahy.Tifrunner.gnm1.ann1.M50Q99 Arachis hypogaea HOM05D001960 ORTHO05D004348 5.8e-68 260.8 130 93.1
Duzib147G0831 Durio zibethinus HOM05D001960 ORTHO05D004348 5.8e-68 260.8 130 93.8
TWI60G1096 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 5.8e-68 260.8 130 93.1
MSTRG.15485 Avicennia marina HOM05D001960 ORTHO05D004348 7.6e-68 260.4 130 94.6
MSTRG.3317 Avicennia marina HOM05D001960 ORTHO05D004348 7.6e-68 260.4 130 93.8
CiPaw.04G019300 Carya illinoinensis HOM05D001960 ORTHO05D004348 7.6e-68 260.4 130 93.1
Oeu050223.1 Olea europaea HOM05D001960 ORTHO05D004348 7.6e-68 260.4 130 93.1
Sed0005459 Sechium edule HOM05D001960 ORTHO05D004348 7.6e-68 260.4 130 93.1
THA.LOC104805447 Tarenaya hassleriana HOM05D001960 ORTHO05D004348 7.6e-68 260.4 130 93.1
THA.LOC104823931 Tarenaya hassleriana HOM05D001960 ORTHO05D004348 7.6e-68 260.4 130 93.1
Ca_04106_v3 Cicer arietinum L. HOM05D001960 ORTHO05D004348 9.9e-68 260.0 130 92.3
Ca_04115_v3 Cicer arietinum L. HOM05D001960 ORTHO05D004348 9.9e-68 260.0 130 92.3
Migut.H00896 Erythranthe guttata HOM05D001960 ORTHO05D004348 9.9e-68 260.0 130 94.6
PGR142G1484 Punica granatum HOM05D001960 ORTHO05D004348 9.9e-68 260.0 130 93.1
Lj1g0025494 Lotus japonicus HOM05D001960 ORTHO05D004348 1.3e-67 259.6 130 92.3
Nitab4.5_0000098g0050 Nicotiana tabacum HOM05D001960 ORTHO05D004348 2.2e-67 258.8 130 93.1
Peaxi162Scf00163g00105 Petunia axillaris HOM05D001960 ORTHO05D004348 2.2e-67 258.8 130 93.1
CiPaw.03G029300 Carya illinoinensis HOM05D001960 ORTHO05D004348 2.9e-67 258.5 130 91.5
Eucgr.I01925 Eucalyptus grandis HOM05D001960 ORTHO05D004348 2.9e-67 258.5 130 93.1
Nitab4.5_0013371g0010 Nicotiana tabacum HOM05D001960 ORTHO05D004348 2.9e-67 258.5 130 92.3
Migut.K01329 Erythranthe guttata HOM05D001960 ORTHO05D004348 3.8e-67 258.1 130 93.8
Hma1.2p1_0423F.1_g150240 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 4.9e-67 257.7 130 93.1
CAN.G128.149 Capsicum annuum HOM05D001960 ORTHO05D004348 6.4e-67 257.3 130 92.3
Manes.17G022700 Manihot esculenta HOM05D001960 ORTHO05D004348 6.4e-67 257.3 130 92.3
Solyc10g081530.2 Solanum lycopersicum HOM05D001960 ORTHO05D004348 6.4e-67 257.3 130 92.3
Sopen10g032040 Solanum pennellii HOM05D001960 ORTHO05D004348 6.4e-67 257.3 130 92.3
PGSC0003DMG400028218 Solanum tuberosum HOM05D001960 ORTHO05D004348 6.4e-67 257.3 130 92.3
Cfa007519 Carpinus fangiana HOM05D001960 ORTHO05D004348 8.4e-67 256.9 130 92.3
Haze_14570 Corylus avellana HOM05D001960 ORTHO05D004348 8.4e-67 256.9 130 92.3
Glyma.09G240300 Glycine max HOM05D001960 ORTHO05D004348 8.4e-67 256.9 130 91.5
Glyma.18G256200 Glycine max HOM05D001960 ORTHO05D004348 8.4e-67 256.9 130 91.5
Oeu060924.1 Olea europaea HOM05D001960 ORTHO05D004348 8.4e-67 256.9 130 92.3
Potri.017G079200 Populus trichocarpa HOM05D001960 ORTHO05D004348 8.4e-67 256.9 130 93.1
VMungo1383G3104 Vigna mungo HOM05D001960 ORTHO05D004348 8.4e-67 256.9 130 91.5
Phvul.008G043300 Phaseolus vulgaris HOM05D001960 ORTHO05D004348 1.9e-66 255.8 130 90.8
Sabra17G0070400 Salix brachista HOM05D001960 ORTHO05D004348 1.9e-66 255.8 130 92.3
AT3G28715 Arabidopsis thaliana HOM05D001960 ORTHO05D004348 2.4e-66 255.4 130 90.0
BcaB07g30124 Brassica carinata HOM05D001960 ORTHO05D004348 2.4e-66 255.4 130 90.0
BcaC03g17524 Brassica carinata HOM05D001960 ORTHO05D004348 2.4e-66 255.4 130 90.0
A02p36010 Brassica napus HOM05D001960 ORTHO05D004348 2.4e-66 255.4 130 90.0
C02p54850 Brassica napus HOM05D001960 ORTHO05D004348 2.4e-66 255.4 130 90.0
BolC2t11546H Brassica oleracea HOM05D001960 ORTHO05D004348 2.4e-66 255.4 130 90.0
BraA02t08600Z Brassica rapa HOM05D001960 ORTHO05D004348 2.4e-66 255.4 130 90.0
CDE06G0436 Ceratophyllum demersum HOM05D001960 ORTHO05D004348 3.2e-66 255.0 130 91.5
Nitab4.5_0002087g0050 Nicotiana tabacum HOM05D001960 ORTHO05D004348 3.2e-66 255.0 130 91.5
QL02p080802 Quercus lobata HOM05D001960 ORTHO05D004348 3.2e-66 255.0 130 90.8
CDE04G1714 Ceratophyllum demersum HOM05D001960 ORTHO05D004348 4.2e-66 254.6 130 92.3
Lalb_Chr21g0318931 Lupinus albus HOM05D001960 ORTHO05D004348 4.2e-66 254.6 130 90.8
Nitab4.5_0000387g0100 Nicotiana tabacum HOM05D001960 ORTHO05D004348 4.2e-66 254.6 129 92.2
Lalb_Chr02g0159521 Lupinus albus HOM05D001960 ORTHO05D004348 9.3e-66 253.4 130 90.0
Lalb_Chr02g0159571 Lupinus albus HOM05D001960 ORTHO05D004348 9.3e-66 253.4 130 90.0
Zm00001eb160620 Zea mays HOM05D001960 ORTHO05D004348 9.3e-66 253.4 130 90.8
Carub.0005s0724 Capsella rubella HOM05D001960 ORTHO05D004348 1.2e-65 253.1 130 90.0
Carub.0005s0725 Capsella rubella HOM05D001960 ORTHO05D004348 1.2e-65 253.1 130 90.0
AL5G18390 Arabidopsis lyrata HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
AL5G18410 Arabidopsis lyrata HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
AT3G28710 Arabidopsis thaliana HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
BcaC06g33635 Brassica carinata HOM05D001960 ORTHO05D008957 2.1e-65 252.3 130 89.2
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
A09p03760 Brassica napus HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
C09p03950 Brassica napus HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 2.1e-65 252.3 130 89.2
BolC9t53326H Brassica oleracea HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
BraA09t36012Z Brassica rapa HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
CARHR151640 Cardamine hirsuta HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
Thhalv10004497m.g Eutrema salsugineum HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
Thhalv10004498m.g Eutrema salsugineum HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
Sp2g17353 Schrenkiella parvula HOM05D001960 ORTHO05D004348 2.1e-65 252.3 130 89.2
Aa31LG2G4500 Aethionema arabicum HOM05D001960 ORTHO05D004348 2.7e-65 251.9 130 89.2
BcaB04g19480 Brassica carinata HOM05D001960 ORTHO05D004348 3.5e-65 251.5 130 88.5
Aa31LG9G1760 Aethionema arabicum HOM05D001960 ORTHO05D004348 4.6e-65 251.1 130 90.0
Os01g0587000 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D004348 7.8e-65 250.4 130 88.5
Sc02g0007720 Simmondsia chinensis HOM05D001960 ORTHO05D004348 1.3e-64 249.6 130 87.7
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 1.7e-64 249.2 130 89.2
Sp2g17360 Schrenkiella parvula HOM05D001960 ORTHO05D004348 1.7e-64 249.2 130 87.7
TPR.G4258 Trifolium pratense HOM05D001960 ORTHO05D004348 5.6e-63 244.2 136 86.0
Pp3c20_18840 Physcomitrium patens HOM05D001960 ORTHO05D004348 1.3e-62 243.0 130 86.9
ATR0706G077 Amborella trichopoda HOM05D001960 ORTHO05D004348 2.8e-62 241.9 121 93.4
Mapoly0006s0177 Marchantia polymorpha HOM05D001960 ORTHO05D004348 3.6e-62 241.5 130 85.4
AagrBONN_evm.TU.Sc2ySwM_340.257 Anthoceros agrestis HOM05D001960 ORTHO05D004348 4.0e-61 238.0 130 84.6
Mapoly0140s0023 Marchantia polymorpha HOM05D001960 ORTHO05D004348 9.0e-61 236.9 130 84.6
CBR_g20991 Chara braunii HOM05D001960 ORTHO05D004348 2.6e-60 235.3 130 82.3
vmacro10254 Vaccinium macrocarpon HOM05D001960 ORTHO05D004348 4.5e-60 234.6 198 62.1
SMO137G0011 Selaginella moellendorffii HOM05D001960 ORTHO05D004348 1.7e-59 232.6 130 83.1
Peaxi162Scf00061g02912 Petunia axillaris HOM05D001960 ORTHO05D004348 1.1e-58 229.9 121 90.1
CBR_g20375 Chara braunii HOM05D001960 ORTHO05D004348 2.7e-57 225.3 130 77.7
CSS0019148 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D004348 4.2e-50 201.4 129 78.3
PRCOL_00003698 Prasinoderma coloniale HOM05D001960 ORTHO05D004348 6.0e-49 197.6 130 68.5
Cre03.g176250 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D004348 5.1e-48 194.5 130 66.9
FAN09G1760 Fragaria x ananassa HOM05D001960 ORTHO05D004348 1.1e-47 193.4 96 93.8
FAN09G2614 Fragaria x ananassa HOM05D001960 ORTHO05D004348 1.5e-47 193.0 97 92.8
Atru.chr8.2689 Acer truncatum HOM05D001960 ORTHO05D004348 2.1e-46 189.1 94 93.6
GSVIVG01011352001 Vitis vinifera HOM05D001960 ORTHO05D004348 2.6e-44 182.2 90 94.4
Hma1.2p1_2982F.1_g331260 Hydrangea macrophylla HOM05D001960 ORTHO05D004348 2.9e-35 152.1 76 94.7
Medtr7g009485 Medicago truncatula HOM05D001960 ORTHO05D004348 3.8e-35 151.8 76 93.4
Rhsim09G0146300 Rhododendron simsii HOM05D001960 ORTHO05D004348 6.5e-35 151.0 76 93.4
MCO01G616 Micromonas commoda HOM05D001960 ORTHO05D004348 1.9e-34 149.4 127 52.8
Haze_26410 Corylus avellana HOM05D001960 ORTHO05D004348 7.9e-33 144.1 129 49.6
Cfa024469 Carpinus fangiana HOM05D001960 ORTHO05D004348 1.3e-32 143.3 128 52.3
BolC8t50104H Brassica oleracea HOM05D001960 ORTHO05D004348 1.8e-32 142.9 80 81.2
Haze_26095 Corylus avellana HOM05D001960 ORTHO05D004348 3.9e-32 141.7 129 48.1
Dinv33729 Davidia involucrata HOM05D001960 ORTHO05D004348 3.3e-31 138.7 76 88.2
Rhsim09G0146500 Rhododendron simsii HOM05D001960 ORTHO05D004348 1.4e-26 123.2 67 85.1
Eucgr.I02249 Eucalyptus grandis HOM05D001960 ORTHO05D004348 3.7e-22 108.6 51 98.0
CARHR151620 Cardamine hirsuta HOM05D001960 ORTHO05D004348 1.1e-21 107.1 54 87.0
RcHm_v2.0_Chr4g0431361 Rosa chinensis HOM05D001960 ORTHO05D004348 2.0e-20 102.8 54 85.2
Dinv40238 Davidia involucrata HOM05D001960 ORTHO05D004348 3.4e-20 102.1 53 86.8
RcHm_v2.0_Chr6g0297701 Rosa chinensis HOM05D001960 ORTHO05D004348 1.7e-19 99.8 54 81.5
Zm00001eb357360 Zea mays HOM05D001960 ORTHO05D033473 1.1e-13 80.5 54 68.5
Nn1g04485 Nelumbo nucifera HOM05D001960 ORTHO05D004348 2.4e-13 79.3 41 87.8
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 2.6e-12 75.9 41 82.9
C08p24880 Brassica napus HOM05D001960 ORTHO05D004348 7.7e-12 74.3 40 80.0
FAN09G2990 Fragaria x ananassa HOM05D007272 ORTHO05D009305 8.5e-11 70.9 32 100.0
TWI32G0692 Tripterygium wilfordii HOM05D001960 ORTHO05D004348 8.5e-11 70.9 32 100.0
Lsat_1_v5_gn_8_159501 Lactuca sativa HOM05D001960 ORTHO05D229701 1.0e-08 63.9 66 54.5
Lsat_1_v5_gn_5_97320 Lactuca sativa HOM05D004736 ORTHO05D006424 1.5e-07 60.1 35 80.0
Haze_14574 Corylus avellana HOM05D001960 ORTHO05D004348 3.7e-06 55.5 32 81.2


User provided reference genes

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