Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026352 Camellia sinensis var. sinensis HOM05D007220 ORTHO05D009058 2.8e-53 212.6 138 100.0
PGR042G1708 Punica granatum HOM05D007220 ORTHO05D009058 8.0e-40 167.9 107 79.4
Thecc.03G158900 Theobroma cacao HOM05D007220 ORTHO05D009058 6.8e-39 164.9 103 79.6
Actinidia25024 Actinidia chinensis HOM05D007220 ORTHO05D009058 2.6e-38 162.9 107 76.6
QL09p019051 Quercus lobata HOM05D007220 ORTHO05D009058 4.4e-38 162.2 106 78.3
Gohir.D07G043100 Gossypium hirsutum HOM05D007220 ORTHO05D009058 5.7e-38 161.8 107 75.7
Manes.14G034000 Manihot esculenta HOM05D007220 ORTHO05D009058 5.7e-38 161.8 107 77.6
Gohir.A07G038900 Gossypium hirsutum HOM05D007220 ORTHO05D009058 9.8e-38 161.0 107 75.7
Gorai.001G046100 Gossypium raimondii HOM05D007220 ORTHO05D009058 9.8e-38 161.0 107 75.7
Dinv28549 Davidia involucrata HOM05D007220 ORTHO05D009058 1.7e-37 160.2 107 76.6
GSVIVG01018558001 Vitis vinifera HOM05D007220 ORTHO05D009058 1.7e-37 160.2 107 74.8
arahy.Tifrunner.gnm1.ann1.0IXC5E Arachis hypogaea HOM05D007220 ORTHO05D009058 4.8e-37 158.7 107 73.8
Cpa.g.sc3.292 Carica papaya HOM05D007220 ORTHO05D009058 6.3e-37 158.3 103 77.7
Eucgr.A02878 Eucalyptus grandis HOM05D007220 ORTHO05D009058 6.3e-37 158.3 107 73.8
COL.COLO4_14153 Corchorus olitorius HOM05D007220 ORTHO05D009058 1.1e-36 157.5 103 77.7
Cfa008220 Carpinus fangiana HOM05D007220 ORTHO05D009058 1.4e-36 157.1 108 75.9
Dinv22967 Davidia involucrata HOM05D007220 ORTHO05D009058 1.8e-36 156.8 107 72.0
Nn4g26358 Nelumbo nucifera HOM05D007220 ORTHO05D009058 2.4e-36 156.4 99 79.8
Sabra15G0142900 Salix brachista HOM05D007220 ORTHO05D009058 2.4e-36 156.4 107 73.8
MSTRG.27183 Avicennia marina HOM05D007220 ORTHO05D009058 4.1e-36 155.6 107 73.8
Cc02_g04040 Coffea canephora HOM05D007220 ORTHO05D009058 4.1e-36 155.6 107 73.8
Glyma.09G232600 Glycine max HOM05D007220 ORTHO05D009058 4.1e-36 155.6 107 73.8
Haze_13838 Corylus avellana HOM05D007220 ORTHO05D009058 7.0e-36 154.8 104 76.0
CiPaw.04G061800 Carya illinoinensis HOM05D007220 ORTHO05D009058 1.2e-35 154.1 107 72.0
ClCG05G007450 Citrullus lanatus HOM05D007220 ORTHO05D009058 2.0e-35 153.3 106 73.6
Potri.015G129600 Populus trichocarpa HOM05D007220 ORTHO05D009058 2.0e-35 153.3 107 73.8
Duzib205G1715 Durio zibethinus HOM05D007220 ORTHO05D009058 3.5e-35 152.5 106 73.6
Peaxi162Scf00241g00624 Petunia axillaris HOM05D007220 ORTHO05D009058 4.5e-35 152.1 100 76.0
Sc19g0001910 Simmondsia chinensis HOM05D007220 ORTHO05D009058 4.5e-35 152.1 107 73.8
SGA_v2.0_scaffold2G01175 Striga asiatica HOM05D007220 ORTHO05D009058 4.5e-35 152.1 101 75.2
THA.LOC104811513 Tarenaya hassleriana HOM05D007220 ORTHO05D009058 4.5e-35 152.1 104 74.0
Nitab4.5_0000072g0560 Nicotiana tabacum HOM05D007220 ORTHO05D009058 7.7e-35 151.4 100 74.0
RcHm_v2.0_Chr1g0374911 Rosa chinensis HOM05D007220 ORTHO05D009058 1.3e-34 150.6 107 70.1
AUR62016183 Chenopodium quinoa HOM05D007220 ORTHO05D009058 1.7e-34 150.2 107 71.0
Nitab4.5_0001548g0050 Nicotiana tabacum HOM05D007220 ORTHO05D009058 1.7e-34 150.2 100 76.0
Lj8A39T34 Lonicera japonica HOM05D007220 ORTHO05D009058 2.3e-34 149.8 107 72.9
SalBow4G2286 Salvia bowleyana HOM05D007220 ORTHO05D009058 2.3e-34 149.8 101 76.2
CsaV3_3G016270 Cucumis sativus L. HOM05D007220 ORTHO05D009058 2.9e-34 149.4 106 74.5
HanXRQChr08g0223851 Helianthus annuus HOM05D007220 ORTHO05D009058 3.8e-34 149.1 100 73.0
Lsat_1_v5_gn_8_9340 Lactuca sativa HOM05D007220 ORTHO05D009058 5.0e-34 148.7 100 72.0
MELO3C006826.2 Cucumis melo HOM05D007220 ORTHO05D009058 6.5e-34 148.3 106 71.7
vmacro09892 Vaccinium macrocarpon HOM05D007220 ORTHO05D009058 1.5e-33 147.1 103 70.9
Rhsim09G0192800 Rhododendron simsii HOM05D007220 ORTHO05D009058 1.9e-33 146.7 103 69.9
SGA_v2.0_scaffold486G52391 Striga asiatica HOM05D007220 ORTHO05D009058 2.5e-33 146.4 101 73.3
unitig_46.g18768 Utricularia gibba HOM05D007220 ORTHO05D009058 4.2e-33 145.6 107 70.1
FAN03G0488 Fragaria x ananassa HOM05D007220 ORTHO05D009058 5.5e-33 145.2 107 67.3
FAN03G2818 Fragaria x ananassa HOM05D007220 ORTHO05D009058 5.5e-33 145.2 107 67.3
FAN10G3220 Fragaria x ananassa HOM05D007220 ORTHO05D009058 7.2e-33 144.8 107 67.3
MD01G1184500 Malus domestica HOM05D007220 ORTHO05D009058 7.2e-33 144.8 107 69.2
Migut.F00451 Erythranthe guttata HOM05D007220 ORTHO05D009058 9.5e-33 144.4 101 71.3
FvH4_7g27960 Fragaria vesca HOM05D007220 ORTHO05D009058 9.5e-33 144.4 107 67.3
FAN06G4318 Fragaria x ananassa HOM05D007220 ORTHO05D009058 9.5e-33 144.4 107 67.3
Solyc03g083570.3 Solanum lycopersicum HOM05D007220 ORTHO05D009058 9.5e-33 144.4 100 72.0
Sopen03g023380 Solanum pennellii HOM05D007220 ORTHO05D009058 9.5e-33 144.4 100 72.0
TWI39G1186 Tripterygium wilfordii HOM05D007220 ORTHO05D009058 1.2e-32 144.1 107 68.2
Atru.chr1.664 Acer truncatum HOM05D007220 ORTHO05D009058 2.1e-32 143.3 107 65.4
Ciclev10005924m.g Citrus clementina HOM05D007220 ORTHO05D009058 2.1e-32 143.3 107 69.2
FAN06G0674 Fragaria x ananassa HOM05D007220 ORTHO05D009058 2.8e-32 142.9 107 66.4
VMungo1127G0384 Vigna mungo HOM05D007220 ORTHO05D009058 2.8e-32 142.9 107 67.3
CAN.G152.17 Capsicum annuum HOM05D007220 ORTHO05D009058 3.6e-32 142.5 100 70.0
Ca_30916_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 3.6e-32 142.5 106 67.9
FAN01G2832 Fragaria x ananassa HOM05D007220 ORTHO05D009058 3.6e-32 142.5 107 67.3
Phvul.011G004500 Phaseolus vulgaris HOM05D007220 ORTHO05D009058 3.6e-32 142.5 107 67.3
Psat7g150000 Pisum sativum HOM05D007220 ORTHO05D009058 1.0e-31 141.0 110 66.4
ECA233G2338 Erigeron canadensis HOM05D007220 ORTHO05D009058 2.3e-31 139.8 102 69.6
Lj3g0016008 Lotus japonicus HOM05D007220 ORTHO05D009058 4.0e-31 139.0 108 66.7
EL10Ac3g05813 Beta vulgaris HOM05D007220 ORTHO05D009058 5.2e-31 138.7 107 65.4
Aqoxy7G00673 Aquilegia oxysepala HOM05D007220 ORTHO05D009058 1.5e-30 137.1 102 65.7
BcaB01g04168 Brassica carinata HOM05D007220 ORTHO05D009058 1.5e-30 137.1 107 64.5
BcaC01g06128 Brassica carinata HOM05D007220 ORTHO05D009058 1.5e-30 137.1 107 64.5
C03p18980 Brassica napus HOM05D007220 ORTHO05D009058 1.5e-30 137.1 107 64.5
BolC3t14287H Brassica oleracea HOM05D007220 ORTHO05D009058 1.5e-30 137.1 107 64.5
Aa31LG3G7960 Aethionema arabicum HOM05D007220 ORTHO05D009058 2.0e-30 136.7 107 66.4
Medtr4g035825 Medicago truncatula HOM05D007220 ORTHO05D009058 2.0e-30 136.7 108 64.8
A03p16110 Brassica napus HOM05D007220 ORTHO05D009058 4.4e-30 135.6 103 65.0
BraA03t10902Z Brassica rapa HOM05D007220 ORTHO05D009058 4.4e-30 135.6 103 65.0
Sp6g13740 Schrenkiella parvula HOM05D007220 ORTHO05D009058 4.4e-30 135.6 107 64.5
CARHR264320 Cardamine hirsuta HOM05D007220 ORTHO05D009058 2.8e-29 132.9 103 64.1
AL8G25850 Arabidopsis lyrata HOM05D007220 ORTHO05D009058 3.7e-29 132.5 98 67.3
AT5G51545 Arabidopsis thaliana HOM05D007220 ORTHO05D009058 3.7e-29 132.5 103 64.1
CDE09G0763 Ceratophyllum demersum HOM05D007220 ORTHO05D009058 8.3e-29 131.3 100 66.0
Carub.0008s1158 Capsella rubella HOM05D007220 ORTHO05D009058 1.4e-28 130.6 98 66.3
PSO782G3417 Papaver somniferum HOM05D007220 ORTHO05D009058 5.9e-27 125.2 100 57.0
HPP92_002073 Vanilla planifolia HOM05D007220 ORTHO05D009058 1.3e-26 124.0 100 59.0
PSO478G4327 Papaver somniferum HOM05D007220 ORTHO05D009058 2.9e-26 122.9 100 55.0
arahy.Tifrunner.gnm1.ann1.83G6QR Arachis hypogaea HOM05D007220 ORTHO05D009058 1.1e-25 120.9 83 71.1
Zm00001eb230760 Zea mays HOM05D007220 ORTHO05D009058 1.2e-24 117.5 112 55.4
SEGI_29714 Sequoiadendron giganteum HOM05D007220 ORTHO05D009058 1.4e-23 114.0 94 61.7
PGSC0003DMG400023001 Solanum tuberosum HOM05D007220 ORTHO05D009058 2.0e-22 110.2 167 41.9
TPR.G15117 Trifolium pratense HOM05D007220 ORTHO05D009058 9.8e-22 107.8 69 72.5
ATR0730G016 Amborella trichopoda HOM05D007220 ORTHO05D009058 8.3e-21 104.8 92 59.8
AUR62035102 Chenopodium quinoa HOM05D007220 ORTHO05D009058 5.4e-20 102.1 107 53.3
Potri.012G128000 Populus trichocarpa HOM05D007220 ORTHO05D009058 4.6e-19 99.0 107 52.3
MD07G1256600 Malus domestica HOM05D007220 ORTHO05D009058 3.1e-15 86.3 53 75.5
Pp3c26_11240 Physcomitrium patens HOM05D007220 ORTHO05D009058 8.9e-15 84.7 93 48.4
AagrBONN_evm.TU.Sc2ySwM_228.5821 Anthoceros agrestis HOM05D007220 ORTHO05D009058 1.2e-14 84.3 92 47.8
MBI12_g20320_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 2.0e-14 83.6 41 90.2
Mapoly0002s0242 Marchantia polymorpha HOM05D007220 ORTHO05D009058 2.2e-13 80.1 80 50.0
TAR629G2293 Trochodendron aralioides HOM05D007220 ORTHO05D009058 3.0e-10 69.7 58 67.2
HanXRQChr04g0107801 Helianthus annuus HOM05D000901 ORTHO05D001160 8.6e-10 68.2 84 46.4
MBI12_g14970_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 1.5e-09 67.4 59 59.3
MBI12_g25331_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 4.3e-09 65.9 62 56.5
Ca_20051_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 2.1e-08 63.5 58 56.9
Sed0003033 Sechium edule HOM05D007220 ORTHO05D009058 3.6e-08 62.8 59 61.0
DCAR_009422 Daucus carota HOM05D007220 ORTHO05D009058 4.7e-08 62.4 59 54.2
DCAR_009423 Daucus carota HOM05D007220 ORTHO05D009058 4.7e-08 62.4 59 54.2
Prupe.2G280700 Prunus persica HOM05D007220 ORTHO05D009058 2.0e-06 57.0 55 56.4


User provided reference genes

Program Settings