Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 5.4e-84 314.3 160 100.0
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 2.5e-49 199.1 129 79.1
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 7.3e-49 197.6 135 77.8
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 1.6e-48 196.4 131 80.2
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 8.1e-48 194.1 129 79.1
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.4e-47 193.4 131 77.9
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 8.9e-47 190.7 135 74.8
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 1.2e-46 190.3 129 76.0
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 2.0e-46 189.5 129 78.3
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 2.6e-46 189.1 105 88.6
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 2.6e-46 189.1 130 78.5
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 4.4e-46 188.3 129 76.7
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 5.8e-46 188.0 133 74.4
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 5.8e-46 188.0 133 74.4
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 7.6e-46 187.6 135 74.8
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 1.3e-45 186.8 130 73.8
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 1.3e-45 186.8 130 76.9
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 2.2e-45 186.0 130 76.9
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 2.9e-45 185.7 135 74.1
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 3.8e-45 185.3 130 76.9
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 4.9e-45 184.9 129 76.7
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 4.9e-45 184.9 138 73.2
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 4.9e-45 184.9 103 90.3
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 6.4e-45 184.5 129 77.5
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 6.4e-45 184.5 134 73.9
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 8.4e-45 184.1 134 73.1
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 8.4e-45 184.1 114 80.7
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 8.4e-45 184.1 130 74.6
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.1e-44 183.7 133 73.7
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 1.1e-44 183.7 133 73.7
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 1.1e-44 183.7 134 75.4
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 1.1e-44 183.7 116 82.8
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 1.4e-44 183.3 129 76.0
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 1.4e-44 183.3 129 75.2
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 1.9e-44 183.0 136 72.1
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 1.9e-44 183.0 132 75.0
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 2.4e-44 182.6 102 88.2
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 2.4e-44 182.6 121 79.3
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 3.2e-44 182.2 120 80.8
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 3.2e-44 182.2 132 72.7
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.2e-44 182.2 105 87.6
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 3.2e-44 182.2 137 74.5
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 3.2e-44 182.2 129 76.7
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 3.2e-44 182.2 129 74.4
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 4.2e-44 181.8 123 76.4
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 4.2e-44 181.8 132 74.2
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 4.2e-44 181.8 129 75.2
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 5.4e-44 181.4 129 75.2
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 5.4e-44 181.4 109 85.3
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 7.1e-44 181.0 113 83.2
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 7.1e-44 181.0 113 83.2
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 7.1e-44 181.0 112 82.1
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 9.2e-44 180.6 99 91.9
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 9.2e-44 180.6 109 83.5
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 1.2e-43 180.3 128 75.0
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 1.6e-43 179.9 129 72.9
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 1.6e-43 179.9 115 82.6
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.6e-43 179.9 115 82.6
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.6e-43 179.9 115 82.6
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 1.6e-43 179.9 115 80.0
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 1.6e-43 179.9 121 78.5
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 2.1e-43 179.5 135 72.6
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 2.1e-43 179.5 102 88.2
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 3.5e-43 178.7 99 91.9
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 3.5e-43 178.7 99 91.9
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 3.5e-43 178.7 98 90.8
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 4.6e-43 178.3 114 80.7
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 4.6e-43 178.3 117 78.6
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 6.0e-43 177.9 118 78.0
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 6.0e-43 177.9 118 78.0
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.0e-43 177.9 114 82.5
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 6.0e-43 177.9 96 91.7
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 7.8e-43 177.6 97 91.8
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 1.7e-42 176.4 144 67.4
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.7e-42 176.4 101 86.1
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.7e-42 176.4 101 86.1
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.7e-42 176.4 101 86.1
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 2.3e-42 176.0 101 88.1
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 6.6e-42 174.5 126 73.8
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 8.7e-42 174.1 114 78.9
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 1.1e-41 173.7 133 72.9
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 1.1e-41 173.7 101 85.1
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 1.1e-41 173.7 101 85.1
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.1e-41 173.7 102 85.3
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.1e-41 173.7 92 93.5
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 1.9e-41 172.9 119 77.3
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.9e-41 172.9 141 68.1
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 2.5e-41 172.6 97 88.7
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 4.3e-41 171.8 118 78.0
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 1.6e-40 169.9 145 63.4
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 2.1e-40 169.5 106 80.2
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 4.7e-40 168.3 136 67.6
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 1.8e-39 166.4 94 86.2
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 2.4e-39 166.0 114 76.3
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 5.3e-39 164.9 125 72.0
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 1.5e-38 163.3 104 78.8
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 1.5e-38 163.3 104 78.8
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 1.5e-38 163.3 104 78.8
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 1.5e-38 163.3 104 78.8
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 2.0e-38 162.9 123 69.9
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 4.4e-38 161.8 104 77.9
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 4.4e-38 161.8 104 77.9
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 5.8e-38 161.4 92 87.0
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 5.8e-38 161.4 95 84.2
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 5.8e-38 161.4 95 83.2
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 1.3e-37 160.2 115 73.9
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.2e-37 159.5 95 83.2
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 2.9e-37 159.1 95 83.2
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 8.4e-37 157.5 213 47.4
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.1e-36 157.1 95 76.8
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 1.4e-36 156.8 208 48.6
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 2.4e-36 156.0 95 76.8
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 5.4e-36 154.8 129 65.9
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 3.5e-35 152.1 95 80.0
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 3.5e-35 152.1 95 75.8
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 7.8e-35 151.0 95 74.7
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 5.6e-33 144.8 88 86.4
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.3e-26 122.9 95 65.3
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 1.6e-24 116.7 110 56.4
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 3.7e-24 115.5 102 64.7
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 1.8e-23 113.2 94 66.0
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 2.4e-23 112.8 113 58.4
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 5.3e-23 111.7 84 75.0
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 6.9e-23 111.3 96 65.6
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 4.9e-21 105.1 57 91.2
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 4.9e-21 105.1 56 92.9
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 2.5e-20 102.8 113 55.8
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.6e-19 100.1 87 62.1
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 4.6e-19 98.6 132 50.8
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 3.9e-18 95.5 94 57.4
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.1e-17 94.0 66 77.3
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 2.5e-17 92.8 56 78.6
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 7.4e-17 91.3 71 71.8
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 1.6e-16 90.1 73 61.6
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.6e-16 90.1 66 66.7
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 3.7e-16 89.0 55 80.0
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 6.9e-15 84.7 64 67.2
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 1.2e-14 84.0 52 78.8
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 2.6e-14 82.8 64 65.6
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 8.4e-13 77.8 68 57.4
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 2.3e-10 69.7 75 56.0
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 1.9e-09 66.6 82 50.0
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 1.6e-08 63.5 36 86.1
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 3.1e-07 59.3 37 75.7


User provided reference genes

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