Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026318 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 1.7e-114 416.0 208 100.0
CSS0015858 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D005532 1.5e-102 376.3 193 97.9
vmacro09254 Vaccinium macrocarpon HOM05D000251 ORTHO05D005532 8.5e-90 334.0 216 79.2
Duzib132G0720 Durio zibethinus HOM05D000251 ORTHO05D005532 1.1e-86 323.6 205 81.0
Thecc.02G183800 Theobroma cacao HOM05D000251 ORTHO05D005532 9.7e-86 320.5 205 80.5
Rhsim04G0070600 Rhododendron simsii HOM05D000251 ORTHO05D005532 1.4e-84 316.6 205 79.0
Actinidia11011 Actinidia chinensis HOM05D000251 ORTHO05D005532 4.1e-84 315.1 205 79.5
Cfa004459 Carpinus fangiana HOM05D000251 ORTHO05D005532 5.3e-84 314.7 204 77.0
COL.COLO4_05022 Corchorus olitorius HOM05D000251 ORTHO05D005532 9.1e-84 313.9 205 80.0
Cpa.g.sc83.76 Carica papaya HOM05D000251 ORTHO05D005532 2.6e-83 312.4 205 78.5
Eucgr.K01048 Eucalyptus grandis HOM05D000251 ORTHO05D005532 7.7e-83 310.8 205 76.6
Gohir.A12G139000 Gossypium hirsutum HOM05D000251 ORTHO05D005532 1.3e-82 310.1 206 77.2
QL08p039799 Quercus lobata HOM05D000251 ORTHO05D005532 2.2e-82 309.3 204 77.9
Atru.chr6.2885 Acer truncatum HOM05D000251 ORTHO05D005532 2.9e-82 308.9 205 77.6
Atru.chr6.2947 Acer truncatum HOM05D000251 ORTHO05D005532 2.9e-82 308.9 205 77.6
PGSC0003DMG400009218 Solanum tuberosum HOM05D000251 ORTHO05D005532 5.0e-82 308.1 205 77.6
Gohir.D12G143400 Gossypium hirsutum HOM05D000251 ORTHO05D005532 6.5e-82 307.8 206 76.7
Sabra17G0010900 Salix brachista HOM05D000251 ORTHO05D005532 6.5e-82 307.8 204 75.0
GSVIVG01020583001 Vitis vinifera HOM05D000251 ORTHO05D005532 6.5e-82 307.8 205 76.1
Ciclev10014095m.g Citrus clementina HOM05D000251 ORTHO05D005532 8.5e-82 307.4 207 74.9
Gorai.008G154700 Gossypium raimondii HOM05D000251 ORTHO05D005532 8.5e-82 307.4 206 77.2
Potri.017G013500 Populus trichocarpa HOM05D000251 ORTHO05D005532 8.5e-82 307.4 205 75.1
CAN.G61.27 Capsicum annuum HOM05D000251 ORTHO05D005532 1.5e-81 306.6 205 77.1
Nitab4.5_0000159g0190 Nicotiana tabacum HOM05D000251 ORTHO05D005532 1.5e-81 306.6 205 76.6
Sopen11g009100 Solanum pennellii HOM05D000251 ORTHO05D005532 1.9e-81 306.2 205 76.6
Lj8C560G4 Lonicera japonica HOM05D000251 ORTHO05D005532 3.2e-81 305.4 205 77.1
Nitab4.5_0006666g0010 Nicotiana tabacum HOM05D000251 ORTHO05D005532 9.4e-81 303.9 205 76.1
Glyma.12G205800 Glycine max HOM05D000251 ORTHO05D005532 1.6e-80 303.1 207 74.9
FAN04G0170 Fragaria x ananassa HOM05D000251 ORTHO05D005532 2.1e-80 302.8 208 74.5
Glyma.13G295100 Glycine max HOM05D000251 ORTHO05D005532 2.1e-80 302.8 206 74.3
FAN08G1506 Fragaria x ananassa HOM05D000251 ORTHO05D005532 3.6e-80 302.0 208 74.0
Peaxi162Scf00495g00120 Petunia axillaris HOM05D000251 ORTHO05D005532 8.0e-80 300.8 204 74.5
PGR142G3105 Punica granatum HOM05D000251 ORTHO05D005532 8.0e-80 300.8 205 74.1
FvH4_5g29681 Fragaria vesca HOM05D000251 ORTHO05D005532 1.0e-79 300.4 206 74.3
MD17G1235400 Malus domestica HOM05D000251 ORTHO05D005532 1.0e-79 300.4 206 73.3
MD09G1243400 Malus domestica HOM05D000251 ORTHO05D005532 1.8e-79 299.7 206 73.3
THA.LOC104826038 Tarenaya hassleriana HOM05D000251 ORTHO05D005532 2.3e-79 299.3 205 74.6
CiPaw.04G127700 Carya illinoinensis HOM05D000251 ORTHO05D005532 5.2e-79 298.1 204 73.0
Migut.A00166 Erythranthe guttata HOM05D000251 ORTHO05D005532 1.2e-78 297.0 206 74.8
Sc12g0003170 Simmondsia chinensis HOM05D000251 ORTHO05D005532 1.2e-78 297.0 205 74.6
TAR627G0503 Trochodendron aralioides HOM05D000251 ORTHO05D005532 2.6e-78 295.8 206 74.8
RcHm_v2.0_Chr7g0223111 Rosa chinensis HOM05D000251 ORTHO05D005532 5.7e-78 294.7 206 74.8
CANSAT64G2637 Cannabis sativa HOM05D000251 ORTHO05D005532 7.5e-78 294.3 207 74.9
Thhalv10003135m.g Eutrema salsugineum HOM05D000251 ORTHO05D005532 1.3e-77 293.5 207 73.4
Lj3g0007891 Lotus japonicus HOM05D000251 ORTHO05D005532 1.3e-77 293.5 207 72.9
AT5G44240 Arabidopsis thaliana HOM05D000251 ORTHO05D005532 1.7e-77 293.1 207 72.9
Medtr2g090610 Medicago truncatula HOM05D000251 ORTHO05D005532 1.7e-77 293.1 207 71.5
Actinidia30461 Actinidia chinensis HOM05D000251 ORTHO05D005532 2.2e-77 292.7 205 74.6
Aa31LG5G3020 Aethionema arabicum HOM05D000251 ORTHO05D005532 3.7e-77 292.0 205 73.2
Manes.13G143600 Manihot esculenta HOM05D000251 ORTHO05D005532 3.7e-77 292.0 205 73.7
TPR.G6498 Trifolium pratense HOM05D000251 ORTHO05D005532 3.7e-77 292.0 207 71.0
Ca_09441_v3 Cicer arietinum L. HOM05D000251 ORTHO05D005532 4.8e-77 291.6 205 71.2
AL8G15780 Arabidopsis lyrata HOM05D000251 ORTHO05D005532 6.3e-77 291.2 207 72.9
Sp2g09050 Schrenkiella parvula HOM05D000251 ORTHO05D005532 8.2e-77 290.8 207 72.5
MSTRG.25929 Avicennia marina HOM05D000251 ORTHO05D005532 1.8e-76 289.7 205 71.7
EL10Ac2g03351 Beta vulgaris HOM05D000251 ORTHO05D005532 1.8e-76 289.7 205 72.7
CARHR178990 Cardamine hirsuta HOM05D000251 ORTHO05D005532 1.8e-76 289.7 206 72.8
Carub.0008s0428 Capsella rubella HOM05D000251 ORTHO05D005532 2.4e-76 289.3 207 72.5
arahy.Tifrunner.gnm1.ann1.28NLID Arachis hypogaea HOM05D000251 ORTHO05D005532 7.0e-76 287.7 206 71.8
VMungo1080G0767 Vigna mungo HOM05D000251 ORTHO05D005532 4.5e-75 285.0 206 72.8
BcaC03g16645 Brassica carinata HOM05D000251 ORTHO05D005532 5.9e-75 284.6 207 71.0
C02p44780 Brassica napus HOM05D000251 ORTHO05D005532 5.9e-75 284.6 207 71.0
BolC2t10522H Brassica oleracea HOM05D000251 ORTHO05D005532 7.7e-75 284.3 207 70.5
BcaC06g34580 Brassica carinata HOM05D000251 ORTHO05D005532 1.0e-74 283.9 206 71.8
C07p26900 Brassica napus HOM05D000251 ORTHO05D005532 1.0e-74 283.9 206 71.8
BolC7t43218H Brassica oleracea HOM05D000251 ORTHO05D005532 1.0e-74 283.9 206 71.8
BraA06t27607Z Brassica rapa HOM05D000251 ORTHO05D005532 1.0e-74 283.9 206 71.8
BcaB07g30538 Brassica carinata HOM05D000251 ORTHO05D005532 2.2e-74 282.7 211 71.1
A06p47370 Brassica napus HOM05D000251 ORTHO05D005532 2.9e-74 282.3 206 71.8
Aqoxy4G02325 Aquilegia oxysepala HOM05D000251 ORTHO05D005532 3.8e-74 282.0 206 72.8
Ah.16g106630 Amaranthus hybridus HOM05D000251 ORTHO05D005532 8.5e-74 280.8 205 70.7
HanXRQChr03g0078711 Helianthus annuus HOM05D000251 ORTHO05D005532 1.5e-73 280.0 208 73.1
Oeu053660.3 Olea europaea HOM05D000251 ORTHO05D005532 1.5e-73 280.0 205 72.2
Hund12502 Selenicereus undatus HOM05D000251 ORTHO05D005532 2.5e-73 279.3 205 70.7
arahy.Tifrunner.gnm1.ann1.97SJFR Arachis hypogaea HOM05D000251 ORTHO05D005532 3.2e-73 278.9 202 71.3
Lalb_Chr14g0367081 Lupinus albus HOM05D000251 ORTHO05D005532 5.5e-73 278.1 205 70.2
Phvul.005G101400 Phaseolus vulgaris HOM05D000251 ORTHO05D005532 9.4e-73 277.3 206 70.4
Lsat_1_v5_gn_5_44941 Lactuca sativa HOM05D000251 ORTHO05D005532 1.6e-72 276.6 207 72.0
SalBow7G3451 Salvia bowleyana HOM05D000251 ORTHO05D005532 2.1e-72 276.2 215 67.9
AUR62042419 Chenopodium quinoa HOM05D000251 ORTHO05D005532 6.1e-72 274.6 205 70.2
PSO675G3162 Papaver somniferum HOM05D000251 ORTHO05D005532 1.0e-71 273.9 212 69.8
PSO541G3054 Papaver somniferum HOM05D000251 ORTHO05D005532 6.8e-71 271.2 212 69.3
MBI15_g37780_MAGBIO Magnolia biondii HOM05D000251 ORTHO05D005532 1.5e-70 270.0 216 64.8
CsaV3_7G005820 Cucumis sativus L. HOM05D000251 ORTHO05D005532 6.3e-69 264.6 206 69.9
Nn7g36698 Nelumbo nucifera HOM05D000251 ORTHO05D005532 6.3e-69 264.6 206 70.9
ClCG07G002540 Citrullus lanatus HOM05D000251 ORTHO05D005532 1.8e-68 263.1 205 69.3
MELO3C018710.2 Cucumis melo HOM05D000251 ORTHO05D005532 2.4e-68 262.7 206 69.4
Lalb_Chr24g0399961 Lupinus albus HOM05D000251 ORTHO05D005532 7.0e-68 261.2 186 72.0
Haze_13212 Corylus avellana HOM05D000251 ORTHO05D005532 9.1e-68 260.8 204 67.6
DCAR_000770 Daucus carota HOM05D000251 ORTHO05D005532 2.3e-66 256.1 205 66.8
AUR62032107 Chenopodium quinoa HOM05D000251 ORTHO05D005532 2.9e-66 255.8 194 69.1
Sed0009923 Sechium edule HOM05D000251 ORTHO05D005532 2.9e-66 255.8 201 69.7
Hund20061 Selenicereus undatus HOM05D000251 ORTHO05D005532 7.2e-65 251.1 179 70.9
DCAR_004456 Daucus carota HOM05D000251 ORTHO05D005532 4.7e-64 248.4 175 72.6
Sed0000387 Sechium edule HOM05D000251 ORTHO05D005532 2.3e-63 246.1 208 65.4
ECA240G1856 Erigeron canadensis HOM05D000251 ORTHO05D005532 6.8e-63 244.6 139 86.3
ATR0697G110 Amborella trichopoda HOM05D000251 ORTHO05D005532 8.9e-63 244.2 206 62.6
unitig_32.g11477 Utricularia gibba HOM05D000251 ORTHO05D005532 1.2e-62 243.8 210 61.4
Os11g0446500 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D005532 2.8e-61 239.2 206 62.6
Zm00001eb326010 Zea mays HOM05D000251 ORTHO05D005532 1.0e-58 230.7 206 60.7
Haze_13211 Corylus avellana HOM05D000251 ORTHO05D005532 1.7e-53 213.4 199 59.3
C02p44810 Brassica napus HOM05D000251 ORTHO05D005532 3.2e-52 209.1 158 67.1
Os04g0353000 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D005532 1.6e-48 196.8 171 60.2
Zm00001eb420520 Zea mays HOM05D000251 ORTHO05D005532 9.8e-46 187.6 175 54.9
Glyma.19G138500 Glycine max HOM05D000251 ORTHO05D005532 7.0e-44 181.4 132 71.2
AagrBONN_evm.TU.Sc2ySwM_117.621 Anthoceros agrestis HOM05D000251 ORTHO05D005532 7.8e-43 177.9 124 66.1
Mapoly0005s0144 Marchantia polymorpha HOM05D000251 ORTHO05D005532 1.7e-42 176.8 185 51.9
HPP92_008210 Vanilla planifolia HOM05D000251 ORTHO05D005532 3.3e-41 172.6 116 72.4
SMO116G0312 Selaginella moellendorffii HOM05D000251 ORTHO05D005532 1.4e-39 167.2 124 65.3
Psat6g048960 Pisum sativum HOM05D000251 ORTHO05D005532 6.8e-39 164.9 94 80.9
Pp3c6_12690 Physcomitrium patens HOM05D000251 ORTHO05D005532 1.7e-37 160.2 167 49.1
Hma1.2p1_1917F.1_g307480 Hydrangea macrophylla HOM05D000251 ORTHO05D005532 3.2e-36 156.0 189 53.4
Dinv06874 Davidia involucrata HOM05D000251 ORTHO05D005532 3.0e-34 149.4 86 84.9
CAN.G370.20 Capsicum annuum HOM05D000251 ORTHO05D005532 5.8e-30 135.2 104 69.2
CiPaw.03G180200 Carya illinoinensis HOM05D000251 ORTHO05D005532 7.8e-27 124.8 79 78.5
Dinv04805 Davidia involucrata HOM05D000251 ORTHO05D005532 6.2e-24 115.2 69 82.6
Dinv04806 Davidia involucrata HOM05D000251 ORTHO05D005532 9.0e-23 111.3 84 70.2
CiPaw.13G046900 Carya illinoinensis HOM05D000251 ORTHO05D002506 2.5e-09 66.6 155 27.1
Cc06_g00360 Coffea canephora HOM05D000251 ORTHO05D002506 9.6e-09 64.7 143 26.6
Peaxi162Scf00732g00248 Petunia axillaris HOM05D000251 ORTHO05D002506 1.6e-08 63.9 132 27.3
QL07p031913 Quercus lobata HOM05D000251 ORTHO05D002506 1.6e-08 63.9 145 28.3
Nitab4.5_0006295g0020 Nicotiana tabacum HOM05D000251 ORTHO05D002506 3.7e-08 62.8 144 25.7
Solyc10g074940.2 Solanum lycopersicum HOM05D000251 ORTHO05D002506 3.7e-08 62.8 132 26.5
Sopen10g027440 Solanum pennellii HOM05D000251 ORTHO05D002506 3.7e-08 62.8 132 26.5
PGSC0003DMG400031222 Solanum tuberosum HOM05D000251 ORTHO05D002506 3.7e-08 62.8 132 26.5
Eucgr.K01290 Eucalyptus grandis HOM05D000251 ORTHO05D002506 8.1e-08 61.6 126 25.4
CiPaw.10G165300 Carya illinoinensis HOM05D000251 ORTHO05D002506 1.1e-07 61.2 137 27.0
CAN.G659.9 Capsicum annuum HOM05D000251 ORTHO05D002506 1.4e-07 60.8 132 25.0
CiPaw.14G037400 Carya illinoinensis HOM05D000251 ORTHO05D002506 1.4e-07 60.8 129 24.0
Lj1g0016921 Lotus japonicus HOM05D000251 ORTHO05D002506 1.4e-07 60.8 134 28.4
Dinv25352 Davidia involucrata HOM05D000251 ORTHO05D002506 2.4e-07 60.1 132 28.0
ECA248G1739 Erigeron canadensis HOM05D000251 ORTHO05D002506 3.1e-07 59.7 132 26.5
Glyma.09G273900 Glycine max HOM05D000251 ORTHO05D002506 3.1e-07 59.7 134 28.4
Nn2g10274 Nelumbo nucifera HOM05D000251 ORTHO05D002506 3.1e-07 59.7 146 28.1
Phvul.010G058000 Phaseolus vulgaris HOM05D000251 ORTHO05D002506 3.1e-07 59.7 128 25.8
Potri.006G109200 Populus trichocarpa HOM05D000251 ORTHO05D002506 3.1e-07 59.7 135 26.7
GSVIVG01030172001 Vitis vinifera HOM05D000251 ORTHO05D002506 3.1e-07 59.7 129 25.6
COL.COLO4_07827 Corchorus olitorius HOM05D000251 ORTHO05D002506 4.0e-07 59.3 134 26.1
Lsat_1_v5_gn_5_152040 Lactuca sativa HOM05D000251 ORTHO05D002506 4.0e-07 59.3 132 24.2
Ciclev10010927m.g Citrus clementina HOM05D000251 ORTHO05D002506 5.3e-07 58.9 136 25.0
Nitab4.5_0002758g0070 Nicotiana tabacum HOM05D000251 ORTHO05D002506 5.3e-07 58.9 158 24.7
Ca_07766_v3 Cicer arietinum L. HOM05D000251 ORTHO05D002506 6.9e-07 58.5 132 28.0
Phvul.008G081700 Phaseolus vulgaris HOM05D000251 ORTHO05D002506 6.9e-07 58.5 134 28.4
Migut.J00030 Erythranthe guttata HOM05D000251 ORTHO05D002506 9.0e-07 58.2 132 26.5
Glyma.18G213100 Glycine max HOM05D000251 ORTHO05D002506 9.0e-07 58.2 134 27.6
TWI53G0402 Tripterygium wilfordii HOM05D000251 ORTHO05D002506 9.0e-07 58.2 142 27.5
VMungo1383G0856 Vigna mungo HOM05D000251 ORTHO05D002506 1.2e-06 57.8 134 27.6
Prupe.6G295200 Prunus persica HOM05D000251 ORTHO05D002506 1.5e-06 57.4 132 25.8
Manes.08G170500 Manihot esculenta HOM05D000251 ORTHO05D002506 2.0e-06 57.0 132 25.8
Medtr7g073480 Medicago truncatula HOM05D000251 ORTHO05D002506 2.0e-06 57.0 134 26.9
Oeu024011.4 Olea europaea HOM05D000251 ORTHO05D002506 2.0e-06 57.0 128 22.7
Psat3g119960 Pisum sativum HOM05D000251 ORTHO05D002506 2.0e-06 57.0 122 27.9
HanXRQChr01g0000591 Helianthus annuus HOM05D000251 ORTHO05D002506 2.6e-06 56.6 132 23.5
MBI03_g05805_MAGBIO Magnolia biondii HOM05D000251 ORTHO05D002506 2.6e-06 56.6 132 26.5
Sed0020391 Sechium edule HOM05D000251 ORTHO05D002506 2.6e-06 56.6 135 24.4
MD04G1175700 Malus domestica HOM05D000251 ORTHO05D002506 3.4e-06 56.2 132 25.0
ClCG04G006340 Citrullus lanatus HOM05D000251 ORTHO05D002506 4.5e-06 55.8 132 25.0
MELO3C025224.2 Cucumis melo HOM05D000251 ORTHO05D002506 4.5e-06 55.8 132 25.0
Dinv23910 Davidia involucrata HOM05D000251 ORTHO05D002506 4.5e-06 55.8 157 26.8
Duzib264G0987 Durio zibethinus HOM05D000251 ORTHO05D000414 4.5e-06 55.8 148 28.4
Glyma.16G220100 Glycine max HOM05D000251 ORTHO05D002506 4.5e-06 55.8 128 25.0
Sed0025287 Sechium edule HOM05D000251 ORTHO05D002506 4.5e-06 55.8 145 26.2
CsaV3_4G027210 Cucumis sativus L. HOM05D000251 ORTHO05D002506 5.8e-06 55.5 132 25.0
Dinv16970 Davidia involucrata HOM05D000251 ORTHO05D002506 5.8e-06 55.5 132 25.0
Lalb_Chr07g0195721 Lupinus albus HOM05D000251 ORTHO05D002506 5.8e-06 55.5 128 24.2
Os03g0334700 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D002506 5.8e-06 55.5 126 22.2
PSO339G1205 Papaver somniferum HOM05D000251 ORTHO05D002506 5.8e-06 55.5 141 28.4
Potri.016G138000 Populus trichocarpa HOM05D000251 ORTHO05D002506 5.8e-06 55.5 132 25.0
Rhsim04G0121400 Rhododendron simsii HOM05D000251 ORTHO05D002506 5.8e-06 55.5 126 24.6
TPR.G31253 Trifolium pratense HOM05D000251 ORTHO05D002506 5.8e-06 55.5 143 26.6
Zm00001eb395180 Zea mays HOM05D000251 ORTHO05D002506 5.8e-06 55.5 132 25.8
Gohir.A02G002900 Gossypium hirsutum HOM05D000251 ORTHO05D002506 7.6e-06 55.1 153 23.5
Gohir.D02G003300 Gossypium hirsutum HOM05D000251 ORTHO05D002506 7.6e-06 55.1 153 23.5
Gorai.005G003800 Gossypium raimondii HOM05D000251 ORTHO05D002506 7.6e-06 55.1 153 23.5
Thecc.04G150400 Theobroma cacao HOM05D000251 ORTHO05D002506 7.6e-06 55.1 132 25.8
Cpa.g.sc86.69 Carica papaya HOM05D000251 ORTHO05D002506 9.9e-06 54.7 132 26.5
Lalb_Chr01g0023821 Lupinus albus HOM05D000251 ORTHO05D002506 9.9e-06 54.7 128 25.0
SGA_v2.0_scaffold85G26602 Striga asiatica HOM05D000251 ORTHO05D002506 9.9e-06 54.7 132 25.0
vmacro08943 Vaccinium macrocarpon HOM05D000251 ORTHO05D002506 9.9e-06 54.7 132 27.3


User provided reference genes

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