Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 8.1e-131 470.3 221 100.0
CSS0000950 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 3.4e-81 305.4 201 80.1
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 5.8e-28 128.6 142 45.1
CSS0049034 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 2.7e-25 119.8 54 90.7
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 1.7e-24 117.1 143 42.0
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 8.6e-24 114.8 130 46.9
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 4.3e-23 112.5 152 40.1
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.6e-22 110.5 163 37.4
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.6e-22 110.5 163 37.4
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 2.1e-22 110.2 148 41.2
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.8e-22 109.8 167 37.7
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 6.2e-22 108.6 140 40.0
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.8e-21 107.1 149 40.3
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 2.3e-21 106.7 150 40.0
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 3.1e-21 106.3 201 34.8
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 6.8e-21 105.1 143 37.8
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 8.9e-21 104.8 155 37.4
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 8.9e-21 104.8 143 38.5
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 2.6e-20 103.2 145 38.6
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 2.6e-20 103.2 192 35.4
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 5.8e-20 102.1 186 37.6
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 7.5e-20 101.7 137 41.6
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 7.5e-20 101.7 173 39.9
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 9.8e-20 101.3 191 35.6
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.7e-19 100.5 143 36.4
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 2.2e-19 100.1 145 37.2
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 2.2e-19 100.1 151 35.8
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 2.9e-19 99.8 172 37.2
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 3.7e-19 99.4 143 37.1
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 1.9e-18 97.1 143 35.7
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 1.9e-18 97.1 179 37.4
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 3.2e-18 96.3 152 34.2
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 4.1e-18 95.9 143 35.7
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 9.2e-18 94.7 143 35.7
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 1.6e-17 94.0 184 33.7
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 2.1e-17 93.6 142 39.4
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 2.7e-17 93.2 187 33.7
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 3.5e-17 92.8 162 34.0
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 4.6e-17 92.4 142 39.4
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 7.8e-17 91.7 149 39.6
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 1.0e-16 91.3 170 35.3
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 1.0e-16 91.3 143 35.0
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 1.0e-16 91.3 152 32.9
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 1.3e-16 90.9 175 31.4
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 1.7e-16 90.5 187 31.6
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.0e-16 89.7 148 35.8
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 3.0e-16 89.7 143 39.2
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 3.0e-16 89.7 209 32.1
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 3.9e-16 89.4 159 34.6
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 5.1e-16 89.0 143 39.2
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 6.6e-16 88.6 180 31.7
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 1.1e-15 87.8 142 38.7
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 1.5e-15 87.4 184 34.2
Lj7P618T64 Lonicera japonica HOM05D007742 ORTHO05D004072 2.5e-15 86.7 221 31.7
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 3.3e-15 86.3 152 30.9
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 4.3e-15 85.9 128 37.5
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 4.3e-15 85.9 128 37.5
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 7.3e-15 85.1 90 48.9
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 7.3e-15 85.1 103 41.7
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 9.5e-15 84.7 145 33.8
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 9.5e-15 84.7 172 32.0
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 9.5e-15 84.7 174 33.3
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 2.1e-14 83.6 110 39.1
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 2.8e-14 83.2 141 34.8
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 3.6e-14 82.8 89 41.6
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 3.6e-14 82.8 188 29.3
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 4.7e-14 82.4 172 31.4
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 4.7e-14 82.4 152 32.9
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 1.1e-13 81.3 156 32.1
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 1.4e-13 80.9 172 34.3
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 1.4e-13 80.9 153 31.4
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 2.3e-13 80.1 142 33.1
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 3.1e-13 79.7 147 32.0
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 3.1e-13 79.7 187 33.2
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 3.1e-13 79.7 179 31.8
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 5.2e-13 79.0 148 33.1
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 6.8e-13 78.6 119 42.9
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.5e-12 77.4 89 40.4
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.5e-12 77.4 143 33.6
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 3.4e-12 76.3 143 34.3
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 3.4e-12 76.3 212 31.6
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 4.4e-12 75.9 145 34.5
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 9.9e-12 74.7 142 31.7
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 1.3e-11 74.3 141 35.5
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 2.2e-11 73.6 149 30.9
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 2.9e-11 73.2 138 31.9
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 4.9e-11 72.4 99 36.4
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 4.9e-11 72.4 177 29.9
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 8.4e-11 71.6 117 32.5
Glyma.19G105400 Glycine max HOM05D007742 ORTHO05D004072 7.1e-10 68.6 181 29.3
vmacro18395 Vaccinium macrocarpon HOM05D007742 ORTHO05D004072 7.1e-10 68.6 72 48.6
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 9.2e-10 68.2 94 37.2
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 1.2e-09 67.8 91 39.6
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 2.1e-09 67.0 97 36.1
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 2.1e-09 67.0 160 28.8
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 3.5e-09 66.2 166 28.9
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 6.0e-09 65.5 121 33.1
COL.COLO4_13391 Corchorus olitorius HOM05D018961 ORTHO05D004072 1.3e-08 64.3 183 30.6
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 1.1e-07 61.2 111 33.3
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 4.3e-07 59.3 171 31.0
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 9.6e-07 58.2 70 38.6
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 6.2e-06 55.5 65 40.0
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 8.1e-06 55.1 64 40.6


User provided reference genes

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