Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 7.2e-78 293.9 154 100.0
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 9.3e-25 117.5 148 53.4
QL07p028342 Quercus lobata HOM05D007866 ORTHO05D003871 7.8e-24 114.4 170 46.5
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 2.3e-23 112.8 150 52.7
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 6.6e-23 111.3 167 44.9
CiPaw.09G201000 Carya illinoinensis HOM05D007866 ORTHO05D003871 1.3e-21 107.1 158 48.1
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 4.4e-19 98.6 151 45.0
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 4.4e-19 98.6 151 45.0
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 4.4e-19 98.6 153 41.8
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 1.7e-18 96.7 161 44.1
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 2.2e-18 96.3 149 43.0
Potri.016G103700 Populus trichocarpa HOM05D007866 ORTHO05D003871 2.9e-18 95.9 159 41.5
Sabra16G0103600 Salix brachista HOM05D007866 ORTHO05D003871 1.4e-17 93.6 156 42.9
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 3.2e-17 92.4 149 44.3
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 7.1e-17 91.3 153 45.8
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 1.2e-16 90.5 157 39.5
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 4.6e-16 88.6 149 44.3
Rhsim05G0199600 Rhododendron simsii HOM05D007866 ORTHO05D003871 5.1e-15 85.1 91 56.0
COL.COLO4_14698 Corchorus olitorius HOM05D007866 ORTHO05D003871 5.6e-14 81.6 160 40.6
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 9.6e-14 80.9 148 41.2
Glyma.03G073100 Glycine max HOM05D007866 ORTHO05D003871 3.6e-13 79.0 168 39.3
Phvul.010G009300 Phaseolus vulgaris HOM05D007866 ORTHO05D003871 6.2e-13 78.2 161 36.0
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 6.2e-13 78.2 154 39.6
Dinv35543 Davidia involucrata HOM05D007866 ORTHO05D003871 8.1e-13 77.8 133 46.6
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 8.1e-13 77.8 170 38.2
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 8.1e-13 77.8 162 38.9
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 8.1e-13 77.8 160 40.6
Glyma.01G105300 Glycine max HOM05D007866 ORTHO05D003871 1.8e-12 76.6 169 39.6
Eucgr.B02728 Eucalyptus grandis HOM05D007866 ORTHO05D003871 2.0e-11 73.2 145 37.9
Gohir.D09G148200 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.0e-11 73.2 158 38.6
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 2.0e-11 73.2 127 39.4
TAR633G1409 Trochodendron aralioides HOM05D007866 ORTHO05D003871 2.0e-11 73.2 120 40.0
VMungo0331G0444 Vigna mungo HOM05D007866 ORTHO05D003871 2.0e-11 73.2 166 35.5
Gohir.A09G152500 Gossypium hirsutum HOM05D007866 ORTHO05D003871 3.4e-11 72.4 158 39.2
Gorai.006G169200 Gossypium raimondii HOM05D007866 ORTHO05D003871 3.4e-11 72.4 158 38.0
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 4.5e-11 72.0 147 37.4
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 4.5e-11 72.0 147 37.4
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 5.8e-11 71.6 103 43.7
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 9.9e-11 70.9 115 41.7
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 9.9e-11 70.9 104 43.3
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 1.3e-10 70.5 127 39.4
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.7e-10 70.1 98 43.9
DCAR_010424 Daucus carota HOM05D007866 ORTHO05D003871 2.9e-10 69.3 107 43.0
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.9e-10 69.3 147 36.1
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 8.4e-10 67.8 94 45.7
DCAR_012139 Daucus carota HOM05D007866 ORTHO05D003871 1.9e-09 66.6 95 45.3
MELO3C003184.2 Cucumis melo HOM05D007866 ORTHO05D003871 2.4e-09 66.2 99 44.4
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.4e-09 66.2 94 45.7
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 2.4e-09 66.2 151 37.1
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 3.2e-09 65.9 144 36.8
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 5.5e-09 65.1 45 62.2
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 9.3e-09 64.3 160 33.1
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 9.3e-09 64.3 189 30.2
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 1.2e-08 63.9 95 45.3
CsaV3_4G025580 Cucumis sativus L. HOM05D007866 ORTHO05D003871 2.1e-08 63.2 99 41.4
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 2.7e-08 62.8 38 81.6
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.7e-08 62.8 97 43.3
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 2.7e-08 62.8 115 40.0
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 4.6e-08 62.0 162 34.0
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 6.0e-08 61.6 45 71.1
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 6.0e-08 61.6 45 71.1
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 6.0e-08 61.6 45 71.1
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 7.9e-08 61.2 117 39.3
arahy.Tifrunner.gnm1.ann1.UGPP85 Arachis hypogaea HOM05D007866 ORTHO05D003871 1.0e-07 60.8 32 81.2
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 1.0e-07 60.8 35 82.9
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.0e-07 60.8 84 39.3
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 1.3e-07 60.5 39 74.4
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.3e-07 60.5 38 68.4
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.3e-07 60.5 38 68.4
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 1.3e-07 60.5 93 38.7
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 1.3e-07 60.5 38 68.4
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 1.3e-07 60.5 38 68.4
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 1.3e-07 60.5 43 65.1
ClCG04G007660 Citrullus lanatus HOM05D007866 ORTHO05D003871 1.8e-07 60.1 123 40.7
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 1.8e-07 60.1 44 56.8
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 2.3e-07 59.7 100 41.0
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 2.3e-07 59.7 147 34.0
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 3.0e-07 59.3 35 80.0
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 3.0e-07 59.3 35 80.0
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 3.0e-07 59.3 103 37.9
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 3.0e-07 59.3 50 52.0
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 3.9e-07 58.9 52 48.1
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 3.9e-07 58.9 53 49.1
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 5.1e-07 58.5 54 46.3
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 5.1e-07 58.5 86 37.2
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 5.1e-07 58.5 74 45.9
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 5.1e-07 58.5 70 40.0
DCAR_028812 Daucus carota HOM05D007866 ORTHO05D003871 6.7e-07 58.2 171 32.7
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 6.7e-07 58.2 52 51.9
Psat7g241400 Pisum sativum HOM05D007866 ORTHO05D003871 6.7e-07 58.2 147 34.7
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 8.7e-07 57.8 52 50.0
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 8.7e-07 57.8 37 64.9
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 8.7e-07 57.8 42 61.9
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 8.7e-07 57.8 56 50.0
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 1.1e-06 57.4 60 50.0
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 1.1e-06 57.4 100 40.0
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 1.1e-06 57.4 44 59.1
Medtr4g019600 Medicago truncatula HOM05D007866 ORTHO05D003871 1.1e-06 57.4 150 36.0
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 1.1e-06 57.4 84 38.1
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 1.1e-06 57.4 38 63.2
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 1.1e-06 57.4 38 65.8
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 1.5e-06 57.0 100 40.0
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 1.5e-06 57.0 38 63.2
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.5e-06 57.0 39 59.0
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 1.5e-06 57.0 58 46.6
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 1.9e-06 56.6 72 47.2
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 1.9e-06 56.6 38 60.5
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 1.9e-06 56.6 38 60.5
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.9e-06 56.6 89 37.1
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 1.9e-06 56.6 51 52.9
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 1.9e-06 56.6 92 39.1
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 2.5e-06 56.2 44 56.8
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 2.5e-06 56.2 103 37.9
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 2.5e-06 56.2 41 58.5
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 2.5e-06 56.2 84 35.7
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 2.5e-06 56.2 37 64.9
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.5e-06 56.2 147 30.6
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 2.5e-06 56.2 147 30.6
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 3.3e-06 55.8 40 60.0
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.3e-06 55.8 149 32.9
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 3.3e-06 55.8 99 35.4
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 4.3e-06 55.5 44 54.5
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 4.3e-06 55.5 44 54.5
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 4.3e-06 55.5 92 38.0
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 5.6e-06 55.1 64 45.3
ECA236G0848 Erigeron canadensis HOM05D007866 ORTHO05D003871 7.4e-06 54.7 104 35.6
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 7.4e-06 54.7 37 59.5
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 7.4e-06 54.7 83 39.8
Sopen02g024570 Solanum pennellii HOM05D007156 ORTHO05D003871 7.4e-06 54.7 52 50.0
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 9.6e-06 54.3 52 51.9
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 9.6e-06 54.3 36 63.9
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 9.6e-06 54.3 36 63.9
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 9.6e-06 54.3 36 63.9
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 9.6e-06 54.3 36 63.9
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 9.6e-06 54.3 36 63.9
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 9.6e-06 54.3 36 63.9


User provided reference genes

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