Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026303 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 7.5e-175 617.1 310 100.0
CSS0037383 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.8e-173 612.5 310 99.0
Dinv37265 Davidia involucrata HOM05D004499 ORTHO05D004928 9.4e-69 264.6 318 56.0
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 5.2e-67 258.8 325 51.1
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 4.8e-65 252.3 329 49.5
CSS0015121 Camellia sinensis var. sinensis HOM05D004499 ORTHO05D004928 1.4e-64 250.8 332 50.9
CiPaw.09G179000 Carya illinoinensis HOM05D004499 ORTHO05D004928 1.2e-63 247.7 320 49.4
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 1.1e-61 241.1 331 50.8
Prupe.6G240400 Prunus persica HOM05D004499 ORTHO05D004928 9.5e-61 238.0 332 47.3
TAR623G0879 Trochodendron aralioides HOM05D004499 ORTHO05D004928 3.6e-60 236.1 324 50.3
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 4.7e-60 235.7 307 50.8
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 6.1e-60 235.3 331 47.7
Gohir.A04G075800 Gossypium hirsutum HOM05D004499 ORTHO05D004928 7.5e-58 228.4 318 47.2
Gorai.009G419500 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.2e-55 221.1 312 47.4
QL07p045089 Quercus lobata HOM05D004499 ORTHO05D004928 1.2e-55 221.1 327 47.4
Manes.09G078863 Manihot esculenta HOM05D004499 ORTHO05D004928 3.5e-55 219.5 311 47.3
Potri.006G130500 Populus trichocarpa HOM05D004499 ORTHO05D004928 4.5e-55 219.2 320 45.9
Sabra06G0102500 Salix brachista HOM05D004499 ORTHO05D004928 4.5e-55 219.2 324 48.1
CANSAT80G2505 Cannabis sativa HOM05D004499 ORTHO05D004928 7.8e-55 218.4 356 43.5
Gohir.A09G151400 Gossypium hirsutum HOM05D004499 ORTHO05D004928 5.0e-54 215.7 301 47.5
Gorai.006G168200 Gossypium raimondii HOM05D004499 ORTHO05D004928 1.1e-53 214.5 301 47.2
Potri.016G086900 Populus trichocarpa HOM05D004499 ORTHO05D004928 1.1e-53 214.5 321 45.2
CiPaw.10G136800 Carya illinoinensis HOM05D004499 ORTHO05D004928 5.6e-53 212.2 329 47.1
Rhsim04G0149000 Rhododendron simsii HOM05D004499 ORTHO05D004928 7.3e-53 211.8 353 44.2
Gohir.D09G147000 Gossypium hirsutum HOM05D004499 ORTHO05D004928 9.5e-53 211.5 304 46.1
Thecc.05G055800 Theobroma cacao HOM05D004499 ORTHO05D004928 1.2e-52 211.1 331 44.7
Cpa.g.sc174.12 Carica papaya HOM05D004499 ORTHO05D004928 8.0e-52 208.4 302 47.0
Duzib093G0117 Durio zibethinus HOM05D004499 ORTHO05D004928 4.0e-51 206.1 324 44.4
RcHm_v2.0_Chr3g0469011 Rosa chinensis HOM05D004499 ORTHO05D004928 9.8e-50 201.4 335 43.9
FAN05G3415 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.1e-48 198.0 334 42.8
Sabra16G0093100 Salix brachista HOM05D004499 ORTHO05D004928 1.8e-48 197.2 316 43.7
Cc06_g03680 Coffea canephora HOM05D004499 ORTHO05D004928 2.4e-48 196.8 351 43.9
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 2.4e-48 196.8 334 40.7
TWI77G0862 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.4e-48 196.8 322 45.0
DCAR_014968 Daucus carota HOM05D004499 ORTHO05D004928 3.2e-48 196.4 284 47.2
ClCG10G020450 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.2e-47 194.5 338 41.1
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 1.6e-47 194.1 340 45.6
Sed0022446 Sechium edule HOM05D004499 ORTHO05D004928 7.8e-47 191.8 324 41.7
Lj1g0000961 Lotus japonicus HOM05D004499 ORTHO05D004928 1.7e-46 190.7 310 45.2
Sed0006356 Sechium edule HOM05D004499 ORTHO05D004928 6.6e-46 188.7 322 42.5
Nn2g13028 Nelumbo nucifera HOM05D004499 ORTHO05D004928 7.3e-45 185.3 348 39.9
Atru.chr8.1895 Acer truncatum HOM05D004499 ORTHO05D004928 9.5e-45 184.9 271 47.6
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 9.5e-45 184.9 314 42.4
Lalb_Chr25g0289231 Lupinus albus HOM05D004499 ORTHO05D004928 3.6e-44 183.0 342 42.7
Glyma.03G178700 Glycine max HOM05D004499 ORTHO05D004928 4.7e-44 182.6 314 44.3
Lalb_Chr01g0018981 Lupinus albus HOM05D004499 ORTHO05D004928 4.7e-44 182.6 341 41.6
Sc20g0005110 Simmondsia chinensis HOM05D004499 ORTHO05D004928 4.7e-44 182.6 332 41.6
FAN02G0924 Fragaria x ananassa HOM05D004499 ORTHO05D004928 6.2e-44 182.2 332 40.4
MSTRG.19143 Avicennia marina HOM05D004499 ORTHO05D004928 8.0e-44 181.8 332 43.4
Oeu029418.1 Olea europaea HOM05D004499 ORTHO05D004928 1.4e-43 181.0 320 43.8
FvH4_6g15510 Fragaria vesca HOM05D004499 ORTHO05D004928 1.8e-43 180.6 337 40.4
FAN09G3365 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.8e-43 180.6 337 40.4
FAN14G2800 Fragaria x ananassa HOM05D004499 ORTHO05D004928 1.8e-43 180.6 337 40.4
Medtr7g100830 Medicago truncatula HOM05D004499 ORTHO05D004928 1.8e-43 180.6 300 43.7
THA.LOC104806496 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 4.0e-43 179.5 315 40.0
Manes.08G004127 Manihot esculenta HOM05D004499 ORTHO05D004928 2.6e-42 176.8 208 53.4
Manes.08G004131 Manihot esculenta HOM05D004499 ORTHO05D004928 2.6e-42 176.8 208 53.4
Manes.08G004114 Manihot esculenta HOM05D004499 ORTHO05D004928 4.4e-42 176.0 208 53.4
Manes.08G004120 Manihot esculenta HOM05D004499 ORTHO05D004928 4.4e-42 176.0 208 53.4
Manes.08G004109 Manihot esculenta HOM05D004499 ORTHO05D004928 7.5e-42 175.3 208 53.4
Manes.08G004117 Manihot esculenta HOM05D004499 ORTHO05D004928 7.5e-42 175.3 208 53.4
Glyma.19G179400 Glycine max HOM05D004499 ORTHO05D004928 9.8e-42 174.9 303 43.6
Manes.08G004126 Manihot esculenta HOM05D004499 ORTHO05D004928 2.2e-41 173.7 208 52.9
Oeu038974.1 Olea europaea HOM05D004499 ORTHO05D004928 4.9e-41 172.6 371 38.8
Lj5g0026303 Lotus japonicus HOM05D004499 ORTHO05D004928 1.4e-40 171.0 338 42.9
MELO3C009326.2 Cucumis melo HOM05D004499 ORTHO05D004928 1.9e-40 170.6 349 39.3
Lsat_1_v5_gn_6_30120 Lactuca sativa HOM05D004499 ORTHO05D004928 3.2e-40 169.9 311 44.4
SalBow3G3210 Salvia bowleyana HOM05D004499 ORTHO05D004928 5.4e-40 169.1 315 44.1
Psat3g044200 Pisum sativum HOM05D004499 ORTHO05D004928 7.0e-40 168.7 317 41.6
Dinv35728 Davidia involucrata HOM05D004499 ORTHO05D004928 9.2e-40 168.3 191 55.0
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 1.6e-39 167.5 340 37.9
CsaV3_3G035670 Cucumis sativus L. HOM05D004499 ORTHO05D004928 7.8e-39 165.2 350 38.0
VMungo1383G2757 Vigna mungo HOM05D004499 ORTHO05D004928 1.7e-38 164.1 300 42.7
MD12G1122400 Malus domestica HOM05D004499 ORTHO05D004928 3.0e-38 163.3 328 39.0
Sopen00g013370 Solanum pennellii HOM05D004499 ORTHO05D004928 1.5e-37 161.0 293 44.7
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 3.3e-37 159.8 318 41.8
Phvul.001G175400 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 4.3e-37 159.5 292 43.2
Duzib106G0876 Durio zibethinus HOM05D004499 ORTHO05D004928 7.3e-37 158.7 312 40.4
PGSC0003DMG400001742 Solanum tuberosum HOM05D004499 ORTHO05D004928 7.3e-37 158.7 289 43.3
MSTRG.26719 Avicennia marina HOM05D004499 ORTHO05D004928 9.5e-37 158.3 306 42.8
Solyc09g007470.2 Solanum lycopersicum HOM05D004499 ORTHO05D004928 3.6e-36 156.4 288 44.1
Ca_08832_v3 Cicer arietinum L. HOM05D004499 ORTHO05D004928 5.2e-35 152.5 304 41.1
Glyma.10G050500 Glycine max HOM05D004499 ORTHO05D004928 9.9e-34 148.3 315 40.6
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 9.9e-34 148.3 298 39.6
CARHR131610 Cardamine hirsuta HOM05D004499 ORTHO05D004928 2.2e-33 147.1 313 38.3
Sp4g19420 Schrenkiella parvula HOM05D004499 ORTHO05D004928 4.9e-33 146.0 325 36.6
Glyma.13G138000 Glycine max HOM05D004499 ORTHO05D004928 6.4e-33 145.6 316 38.9
Manes.08G004906 Manihot esculenta HOM05D004499 ORTHO05D004928 1.9e-32 144.1 184 52.2
Thhalv10016942m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 4.1e-32 142.9 328 35.4
Manes.12G048251 Manihot esculenta HOM05D004499 ORTHO05D004928 4.1e-32 142.9 184 51.6
MSTRG.10304 Avicennia marina HOM05D004499 ORTHO05D004928 5.4e-32 142.5 307 37.8
Phvul.007G164800 Phaseolus vulgaris HOM05D004499 ORTHO05D004928 7.1e-32 142.1 304 39.5
Oeu059988.1 Olea europaea HOM05D004499 ORTHO05D004928 9.2e-32 141.7 416 34.6
BcaC03g13031 Brassica carinata HOM05D004499 ORTHO05D004928 1.6e-31 141.0 320 37.2
C02p00790 Brassica napus HOM05D004499 ORTHO05D004928 1.6e-31 141.0 320 37.2
BolC2t06077H Brassica oleracea HOM05D004499 ORTHO05D004928 1.6e-31 141.0 320 37.2
BcaB05g21851 Brassica carinata HOM05D004499 ORTHO05D004928 4.6e-31 139.4 329 36.2
Gohir.D04G114901 Gossypium hirsutum HOM05D004499 ORTHO05D004928 4.6e-31 139.4 158 51.9
Oeu060092.2 Olea europaea HOM05D000784 ORTHO05D004928 4.6e-31 139.4 290 40.0
Sp6g39600 Schrenkiella parvula HOM05D004499 ORTHO05D004928 4.6e-31 139.4 307 40.1
Thhalv10014228m.g Eutrema salsugineum HOM05D004499 ORTHO05D004928 1.0e-30 138.3 318 39.9
Psat6g070200 Pisum sativum HOM05D004499 ORTHO05D004928 2.3e-30 137.1 293 39.6
Lalb_Chr20g0112851 Lupinus albus HOM05D004499 ORTHO05D004928 3.9e-30 136.3 328 36.9
Lsat_1_v5_gn_1_54160 Lactuca sativa HOM05D004499 ORTHO05D004928 6.6e-30 135.6 287 42.2
Manes.05G197001 Manihot esculenta HOM05D004499 ORTHO05D004928 6.6e-30 135.6 184 50.5
Actinidia40043 Actinidia chinensis HOM05D004499 ORTHO05D004928 1.5e-29 134.4 311 38.6
Migut.J00423 Erythranthe guttata HOM05D004499 ORTHO05D004928 1.5e-29 134.4 330 37.0
unitig_26.g9218 Utricularia gibba HOM05D004499 ORTHO05D004928 1.5e-29 134.4 297 38.0
ClCG04G008860 Citrullus lanatus HOM05D004499 ORTHO05D004928 1.9e-29 134.0 276 38.8
SGA_v2.0_scaffold126G33909 Striga asiatica HOM05D004499 ORTHO05D004928 1.9e-29 134.0 291 40.2
MELO3C014257.2 Cucumis melo HOM05D004499 ORTHO05D004928 2.5e-29 133.7 300 37.7
CARHR210240 Cardamine hirsuta HOM05D004499 ORTHO05D004928 1.6e-28 131.0 308 36.7
ECA233G0353 Erigeron canadensis HOM05D004499 ORTHO05D004928 2.1e-28 130.6 280 39.3
THA.LOC104826978 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 2.1e-28 130.6 314 36.3
BraA02t04744Z Brassica rapa HOM05D004499 ORTHO05D004928 3.6e-28 129.8 324 35.8
Manes.05G197300 Manihot esculenta HOM05D004499 ORTHO05D004928 6.2e-28 129.0 216 44.4
AL4G33450 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 1.1e-27 128.3 321 34.3
DCAR_009280 Daucus carota HOM05D004499 ORTHO05D004928 1.4e-27 127.9 310 36.8
RhsimUnG0115800 Rhododendron simsii HOM05D004499 ORTHO05D004928 1.4e-27 127.9 273 38.5
AL6G12390 Arabidopsis lyrata HOM05D004499 ORTHO05D004928 8.9e-27 125.2 303 37.3
BcaB02g09303 Brassica carinata HOM05D004499 ORTHO05D004928 1.5e-26 124.4 332 33.4
AT5G03110 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 2.0e-26 124.0 303 36.0
BcaC02g11837 Brassica carinata HOM05D004499 ORTHO05D004928 2.6e-26 123.6 326 35.9
AUR62042302 Chenopodium quinoa HOM05D004499 ORTHO05D004928 2.6e-26 123.6 306 35.9
C04p10830 Brassica napus HOM05D004499 ORTHO05D004928 3.4e-26 123.2 326 35.9
BolC4t22678H Brassica oleracea HOM05D004499 ORTHO05D004928 7.6e-26 122.1 325 35.7
Aa31LG5G22320 Aethionema arabicum HOM05D004499 ORTHO05D004928 9.9e-26 121.7 301 32.9
A05p08740 Brassica napus HOM05D004499 ORTHO05D004928 9.9e-26 121.7 329 35.9
CsaV3_6G039360 Cucumis sativus L. HOM05D004499 ORTHO05D004928 4.9e-25 119.4 282 37.6
BraA05t19842Z Brassica rapa HOM05D004499 ORTHO05D004928 1.1e-24 118.2 329 34.7
THA.LOC104816329 Tarenaya hassleriana HOM05D004499 ORTHO05D004928 1.4e-24 117.9 321 35.5
Carub.0006s0191 Capsella rubella HOM05D004499 ORTHO05D004928 4.1e-24 116.3 247 37.7
Sc02g0001920 Simmondsia chinensis HOM05D004499 ORTHO05D004928 5.4e-24 115.9 271 37.6
SHI12538 Sapria himalayana HOM05D004499 ORTHO05D004928 3.5e-23 113.2 269 39.0
AT2G37100 Arabidopsis thaliana HOM05D004499 ORTHO05D004928 1.3e-22 111.3 313 31.3
Ah.15g092180 Amaranthus hybridus HOM05D004499 ORTHO05D004928 8.7e-22 108.6 177 42.4
COL.COLO4_27061 Corchorus olitorius HOM05D004499 ORTHO05D004928 8.7e-22 108.6 75 77.3
Sed0011318 Sechium edule HOM05D004499 ORTHO05D004928 1.5e-21 107.8 192 41.1
Carub.0004s1899 Capsella rubella HOM05D004499 ORTHO05D004928 2.5e-21 107.1 314 33.4
PSO063G6372 Papaver somniferum HOM05D004499 ORTHO05D004928 2.8e-20 103.6 306 33.7
AUR62040029 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.1e-19 101.7 301 33.9
HanXRQChr02g0051991 Helianthus annuus HOM05D004499 ORTHO05D004928 4.4e-18 96.3 410 29.3
PSO339G1230 Papaver somniferum HOM05D004499 ORTHO05D004928 5.8e-18 95.9 298 31.9
PSO384G2831 Papaver somniferum HOM05D004499 ORTHO05D004928 7.6e-18 95.5 291 33.7
AUR62044753 Chenopodium quinoa HOM05D004499 ORTHO05D004928 1.7e-17 94.4 284 32.7
SGA_v2.0_scaffold94G28675 Striga asiatica HOM05D004499 ORTHO05D004928 2.9e-17 93.6 281 34.9
TPR.G36959 Trifolium pratense HOM05D004499 ORTHO05D004928 6.4e-17 92.4 259 36.3
PSO339G0805 Papaver somniferum HOM05D004499 ORTHO05D004928 1.1e-16 91.7 331 31.1
Peaxi162Scf00005g04016 Petunia axillaris HOM05D004499 ORTHO05D004928 1.9e-16 90.9 76 69.7
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 4.8e-12 76.3 178 36.5
HPP92_001043 Vanilla planifolia HOM05D004499 ORTHO05D004928 4.8e-12 76.3 222 33.3
Actinidia14388 Actinidia chinensis HOM05D004499 ORTHO05D004928 1.2e-10 71.6 116 42.2
Nn4g25115 Nelumbo nucifera HOM05D004499 ORTHO05D004928 6.4e-09 65.9 121 35.5
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.4e-08 63.9 260 30.0
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 2.4e-08 63.9 304 27.6
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 4.2e-08 63.2 223 32.3
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 5.4e-08 62.8 165 35.2
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 5.4e-08 62.8 281 29.2
MBI05_g41566_MAGBIO Magnolia biondii HOM05D060308 ORTHO05D004928 7.1e-08 62.4 153 34.0
Zm00001eb265390 Zea mays HOM05D004499 ORTHO05D004928 7.1e-08 62.4 235 31.1
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 2.1e-07 60.8 310 26.5
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.0e-06 58.5 354 26.8
HPP92_025086 Vanilla planifolia HOM05D004499 ORTHO05D004928 1.0e-06 58.5 349 26.6
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 6.7e-06 55.8 275 27.6


User provided reference genes

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