Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 2134.0 1057 100.0
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1807.7 1059 83.7
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1726.5 1169 74.9
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1596.6 1068 73.6
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1593.9 1065 74.6
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1564.7 1051 71.6
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1554.7 1054 71.2
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1547.3 1055 71.0
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1543.1 1053 71.1
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1526.1 1063 71.2
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1516.9 1056 69.8
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1515.0 1047 69.3
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1514.2 1052 70.2
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1513.0 1084 69.5
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1510.4 1180 67.9
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1499.6 1056 69.6
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1499.2 1028 70.1
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1498.4 1048 69.1
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1496.9 1058 67.5
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1488.4 1045 69.0
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1480.7 1058 68.2
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1479.2 1100 66.8
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1465.3 1047 67.9
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1464.1 1059 67.7
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1462.6 1051 67.2
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1461.4 1056 66.3
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1461.0 1050 69.0
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1458.0 1057 67.9
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1457.6 1052 66.7
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1457.6 1054 67.2
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1456.4 1048 66.6
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1455.3 1060 66.9
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1449.9 1052 66.6
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1448.7 1057 67.6
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1446.0 1058 67.6
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1445.6 1134 63.9
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1440.6 1056 66.6
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1440.2 1041 66.7
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1436.8 1058 67.2
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1435.6 1053 66.9
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1432.5 1060 66.5
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1432.5 1065 66.9
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1431.8 1061 66.3
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1431.4 1062 67.1
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1425.2 1052 65.2
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1419.1 1053 64.9
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1419.1 1095 64.5
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1417.1 1009 68.0
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1409.4 1055 64.7
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1407.1 1060 65.0
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1402.9 1063 64.8
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1401.7 1048 65.1
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1401.0 1047 65.8
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1397.5 1063 64.6
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1397.1 1054 65.1
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1389.8 1064 64.8
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1387.9 1053 64.8
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1385.9 1054 64.8
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1385.9 1054 64.3
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1384.8 1053 64.7
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1383.2 1086 63.4
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1382.1 1062 64.0
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1371.3 1056 63.9
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1370.1 1053 63.9
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1367.4 1087 62.5
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1365.9 1054 64.1
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1363.2 1058 63.0
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1359.4 1090 62.3
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1359.0 1054 63.4
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1355.1 1077 63.5
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1352.0 1051 63.0
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1343.6 1106 61.6
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1342.0 1055 63.2
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1340.5 1070 63.3
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1339.3 1055 63.2
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1337.0 1051 63.4
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1331.2 1057 62.1
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1328.2 1055 62.7
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1328.2 1054 62.9
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1326.6 1055 62.7
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1322.0 1035 64.6
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1317.4 1054 62.7
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1300.8 1036 62.3
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1298.9 1146 58.6
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1258.8 1052 61.1
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1257.7 1047 58.8
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1238.4 1054 59.4
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1209.9 857 67.9
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1204.1 1024 57.3
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1185.6 1038 58.0
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 0.0e+00 1148.7 1057 56.9
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 0.0e+00 1137.1 877 63.2
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 3.5e-309 1065.1 1022 52.5
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 3.1e-281 972.2 899 56.7
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 7.0e-281 971.1 680 68.2
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 3.0e-276 955.7 1064 48.3
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 2.4e-273 946.0 884 56.0
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 1.2e-240 837.4 1062 42.4
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 1.0e-239 834.3 735 57.6
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 4.7e-237 825.5 707 58.8
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.8e-236 823.5 509 77.0
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 2.9e-218 763.1 820 49.9
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 4.3e-214 749.2 704 52.1
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 1.3e-213 747.7 666 55.6
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 1.5e-206 724.2 725 53.2
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.8e-204 717.2 542 66.4
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 9.3e-201 704.9 1006 39.7
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 2.6e-195 686.8 852 42.7
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 2.7e-192 676.8 1047 39.4
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 9.0e-188 661.8 516 62.8
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.2e-184 651.4 850 40.8
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 2.8e-181 640.2 597 55.6
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 1.2e-176 624.8 506 62.8
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.3e-162 578.2 514 56.0
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.1e-161 575.1 436 65.8
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 1.5e-153 548.1 381 69.0
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 3.5e-131 473.8 350 66.3
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 1.4e-127 461.8 450 51.1
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 1.2e-126 458.8 353 63.7
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 4.4e-118 430.3 344 59.6
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 1.3e-114 418.7 855 32.7
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 6.2e-96 356.7 220 80.9
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 3.0e-90 337.8 259 65.6
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 3.9e-90 337.4 1138 26.6
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 7.9e-75 286.6 226 61.1
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.4e-71 275.8 291 49.1
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.3e-69 269.2 177 74.6
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 3.2e-68 264.6 968 27.0
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 5.5e-68 263.8 244 56.6
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 1.6e-67 262.3 504 35.7
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 2.1e-67 261.9 269 52.0
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 3.0e-66 258.1 391 41.7
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.0e-61 243.0 209 57.9
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.7e-59 235.0 153 69.9
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 5.3e-55 220.7 1176 23.8
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 2.6e-54 218.4 326 41.1
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 1.5e-49 202.6 215 50.2
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 6.3e-48 197.2 126 74.6
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.3e-34 152.1 193 45.1
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 2.3e-34 152.1 102 68.6
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 1.5e-33 149.4 330 33.0
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 8.3e-32 143.7 109 65.1
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.1e-31 143.3 113 65.5
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 1.9e-28 132.5 108 62.0
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 9.5e-28 130.2 152 46.7
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 3.6e-27 128.3 102 61.8
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 4.4e-25 121.3 88 59.1
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 7.5e-25 120.6 164 40.2
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 1.3e-24 119.8 154 46.8
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 4.6e-22 111.3 71 70.4
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 5.8e-17 94.4 70 61.4
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 8.3e-16 90.5 123 39.0
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 1.4e-15 89.7 70 61.4
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 4.6e-14 84.7 104 42.3
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 1.2e-09 70.1 77 46.8
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 7.1e-07 60.8 45 64.4


User provided reference genes

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