Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 0.0e+00 1099.3 600 100.0
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 0.0e+00 1078.2 600 98.7
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 2.3e-196 689.5 486 77.0
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 6.5e-191 671.4 604 67.9
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 6.7e-188 661.4 622 62.7
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 2.5e-187 659.4 628 62.3
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 1.1e-179 634.0 640 60.5
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 1.0e-175 620.9 623 59.2
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 4.2e-174 615.5 624 62.2
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 6.3e-170 601.7 623 60.2
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 1.8e-169 600.1 603 60.4
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 4.1e-169 599.0 607 60.6
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 8.5e-167 591.3 616 58.6
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.9e-166 590.1 604 59.8
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 3.6e-165 585.9 616 58.0
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 8.8e-164 581.3 688 55.8
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.2e-163 580.9 621 57.2
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 2.0e-163 580.1 625 57.3
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 2.6e-163 579.7 621 58.8
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.2e-162 576.6 635 56.2
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 2.8e-162 576.2 641 56.8
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 3.7e-162 575.9 624 57.4
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 4.1e-161 572.4 614 57.3
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.2e-160 570.9 635 57.3
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 2.0e-160 570.1 596 58.7
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 4.5e-160 568.9 643 55.8
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 5.0e-159 565.5 642 55.5
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 5.0e-159 565.5 608 58.9
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 1.5e-158 563.9 609 58.8
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 5.5e-158 562.0 706 51.3
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.8e-156 557.0 643 55.1
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 2.3e-156 556.6 606 58.3
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 1.5e-155 553.9 633 55.8
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 2.0e-155 553.5 624 57.2
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 1.1e-153 547.7 612 57.0
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 1.4e-153 547.4 661 54.6
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.1e-153 546.2 656 55.5
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 1.6e-152 543.9 624 55.3
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 1.0e-151 541.2 589 60.6
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 5.5e-150 535.4 586 56.1
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 6.8e-148 528.5 618 54.0
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 2.6e-147 526.6 465 64.5
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 4.9e-146 522.3 620 55.8
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 7.0e-145 518.5 622 54.3
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 1.0e-143 514.6 483 62.5
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 2.3e-143 513.5 669 52.5
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 7.3e-142 508.4 693 50.4
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 4.7e-141 505.8 673 50.5
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 8.0e-141 505.0 492 61.0
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 4.0e-140 502.7 482 63.3
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 8.9e-140 501.5 644 52.6
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 3.4e-139 499.6 465 62.4
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 4.9e-138 495.7 603 52.6
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 8.3e-138 495.0 608 54.4
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 1.9e-137 493.8 636 50.3
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 3.2e-137 493.0 610 54.3
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 3.2e-137 493.0 541 56.4
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 5.4e-137 492.3 663 50.8
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 7.0e-137 491.9 500 59.8
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 6.6e-135 485.3 607 53.0
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 8.6e-135 485.0 475 60.8
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 2.5e-134 483.4 760 47.2
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 4.3e-134 482.6 760 47.0
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 9.5e-134 481.5 634 51.7
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 1.5e-131 474.2 575 54.6
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 7.5e-131 471.9 497 58.4
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 2.9e-130 469.9 560 52.5
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 1.1e-129 468.0 577 53.4
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 3.2e-129 466.5 525 55.4
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 9.2e-129 464.9 607 52.7
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 6.0e-128 462.2 611 48.3
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 1.0e-127 461.5 593 52.1
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 1.3e-127 461.1 594 51.2
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 1.3e-127 461.1 606 49.2
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 8.6e-127 458.4 656 47.0
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 3.6e-125 453.0 385 66.8
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 4.0e-124 449.5 550 54.9
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 2.0e-123 447.2 595 51.3
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 3.7e-122 443.0 593 51.3
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 3.7e-122 443.0 595 50.9
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 4.9e-122 442.6 579 50.8
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 6.0e-120 435.6 615 49.6
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 2.3e-119 433.7 611 49.3
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 6.6e-119 432.2 653 45.9
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 8.6e-119 431.8 484 54.3
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 1.2e-117 427.9 673 43.7
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 1.5e-115 421.0 677 43.0
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 2.2e-114 417.2 592 50.2
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 2.2e-114 417.2 592 50.2
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 1.4e-113 414.5 592 49.8
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 6.9e-108 395.6 792 39.9
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 4.6e-104 382.9 538 48.1
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 6.0e-104 382.5 391 61.4
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 6.0e-104 382.5 391 61.4
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 3.9e-103 379.8 361 62.0
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 3.8e-98 363.2 415 55.9
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 1.1e-97 361.7 419 55.4
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.1e-92 345.1 600 40.5
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 5.7e-86 322.8 287 60.3
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 5.3e-84 316.2 258 67.1
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 3.2e-81 307.0 610 39.5
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 9.7e-78 295.4 367 55.9
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 8.2e-77 292.4 308 53.9
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 1.4e-73 281.6 243 64.6
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 7.9e-72 275.8 248 66.1
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 6.7e-71 272.7 612 36.1
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 4.8e-61 240.0 366 47.5
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 7.7e-59 232.6 370 46.2
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.0e-58 232.3 178 70.8
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 4.7e-56 223.4 449 37.4
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 4.4e-54 216.9 241 52.3
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 1.5e-46 191.8 237 54.4
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 1.1e-41 175.6 176 56.2
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 7.7e-35 152.9 129 63.6
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 2.3e-31 141.4 103 69.9
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 8.9e-31 139.4 194 47.4
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 7.5e-30 136.3 210 41.4
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 1.1e-28 132.5 103 67.0
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 9.2e-28 129.4 263 37.6
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 3.7e-21 107.5 355 27.3
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 4.6e-19 100.5 234 37.2
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 3.9e-18 97.4 165 41.8
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.6e-16 92.0 191 38.2
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 4.7e-16 90.5 70 68.6
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 2.4e-12 78.2 65 61.5
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 9.2e-12 76.3 106 44.3
Actinidia38836 Actinidia chinensis HOM05D006007 ORTHO05D007518 4.6e-11 73.9 68 58.8
Oeu051017.1 Olea europaea HOM05D020362 ORTHO05D030297 2.5e-09 68.2 135 43.7
Peaxi162Scf00991g00335 Petunia axillaris HOM05D006007 ORTHO05D007518 1.6e-08 65.5 125 47.2
SGA_v2.0_scaffold52G19163 Striga asiatica HOM05D020362 ORTHO05D030297 5.8e-06 57.0 128 35.9


User provided reference genes

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