Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026212 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 2.3e-156 555.4 265 100.0
CSS0009810 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 4.0e-145 518.1 271 93.4
CSS0042483 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 1.7e-119 433.0 267 83.1
CSS0007712 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 3.8e-119 431.8 264 83.7
CSS0000180 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 2.9e-111 405.6 255 83.1
CSS0013208 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 3.2e-102 375.6 260 76.9
CSS0005105 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 9.6e-54 214.5 149 65.8
CSS0037888 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 9.6e-54 214.5 149 65.8
CSS0039716 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 1.4e-52 210.7 149 64.4
CSS0026970 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 3.1e-52 209.5 149 65.1
RcHm_v2.0_Chr4g0402051 Rosa chinensis HOM05D000791 ORTHO05D000669 1.5e-27 127.5 236 29.7
Rhsim03G0202300 Rhododendron simsii HOM05D017301 ORTHO05D000669 1.9e-25 120.6 239 32.2
Dinv31455 Davidia involucrata HOM05D000791 ORTHO05D000669 3.9e-23 112.8 242 28.9
MBI12_g43234_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-22 110.9 239 28.0
Dinv01181 Davidia involucrata HOM05D000791 ORTHO05D000669 1.9e-22 110.5 231 28.1
MBI02_g29975_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.3e-22 109.8 235 27.2
PGR004G1992 Punica granatum HOM05D000791 ORTHO05D000669 7.4e-22 108.6 239 30.1
MBI15_g15098_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.3e-21 107.8 239 28.5
MBI13_g12520_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.8e-21 106.7 239 27.6
FAN10G2090 Fragaria x ananassa HOM05D008705 ORTHO05D000669 6.3e-21 105.5 240 27.5
MBI07_g22513_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.2e-21 105.1 239 27.6
MBI16_g34343_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.2e-21 105.1 237 27.8
MBI19_g18856_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.4e-20 104.4 239 27.6
MBI15_g13723_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.8e-20 104.0 234 29.5
FAN10G3855 Fragaria x ananassa HOM05D008705 ORTHO05D000669 3.1e-20 103.2 231 27.7
Rhsim09G0047300 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.1e-20 103.2 236 30.5
RcHm_v2.0_Chr3g0486961 Rosa chinensis HOM05D008705 ORTHO05D000669 4.1e-20 102.8 232 28.4
vmacro01281 Vaccinium macrocarpon HOM05D017301 ORTHO05D000669 4.1e-20 102.8 189 33.3
Dinv24767 Davidia involucrata HOM05D000791 ORTHO05D000669 1.7e-18 97.4 211 28.9
RcHm_v2.0_Chr4g0385011 Rosa chinensis HOM05D008705 ORTHO05D000669 1.7e-18 97.4 235 26.0
MBI19_g27593_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.9e-18 96.7 239 27.6
MBI19_g01025_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.5e-18 95.1 235 26.0
TWI38G2136 Tripterygium wilfordii HOM05D003120 ORTHO05D000669 4.2e-17 92.8 234 27.4
Dinv16095 Davidia involucrata HOM05D000791 ORTHO05D000669 7.2e-17 92.0 212 27.8
FvH4_3g22812 Fragaria vesca HOM05D023520 ORTHO05D025365 9.4e-17 91.7 141 29.8
FAN20G1055 Fragaria x ananassa HOM05D008705 ORTHO05D001863 9.4e-17 91.7 231 26.4
FAN09G3738 Fragaria x ananassa HOM05D008705 ORTHO05D001863 2.7e-16 90.1 230 27.4
MBI09_g39165_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.6e-16 89.7 235 26.0
MBI17_g17142_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.6e-16 89.4 236 26.3
Dinv11320 Davidia involucrata HOM05D000791 ORTHO05D000669 6.1e-16 89.0 247 24.3
Dinv18594 Davidia involucrata HOM05D000791 ORTHO05D000669 2.3e-15 87.0 258 24.0
MBI11_g23002_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.1e-15 85.9 236 26.7
Lj1A283G17 Lonicera japonica HOM05D008705 ORTHO05D000669 6.7e-15 85.5 150 32.7
FAN17G1365 Fragaria x ananassa HOM05D008705 ORTHO05D000669 8.8e-15 85.1 234 25.6
Glyma.08G123400 Glycine max HOM05D008291 ORTHO05D000669 8.8e-15 85.1 224 25.9
CiPaw.14G126400 Carya illinoinensis HOM05D003120 ORTHO05D003568 2.0e-14 84.0 210 28.1
MBI19_g46209_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.0e-14 84.0 235 26.0
RcHm_v2.0_Chr1g0381191 Rosa chinensis HOM05D008705 ORTHO05D000669 2.0e-14 84.0 187 27.8
RcHm_v2.0_Chr7g0214031 Rosa chinensis HOM05D008705 ORTHO05D000669 2.0e-14 84.0 187 27.8
TPR.G6754 Trifolium pratense HOM05D008291 ORTHO05D003568 2.5e-14 83.6 233 24.9
MBI13_g41510_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.3e-14 83.2 197 27.4
Dinv12412 Davidia involucrata HOM05D010418 ORTHO05D000669 4.3e-14 82.8 152 29.6
MBI19_g18851_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.7e-14 82.4 248 26.2
PSO210G0630 Papaver somniferum HOM05D030578 ORTHO05D000669 7.4e-14 82.0 249 23.3
Glyma.05G165700 Glycine max HOM05D008291 ORTHO05D000669 9.7e-14 81.6 224 26.3
FvH4_4g05492 Fragaria vesca HOM05D008705 ORTHO05D000669 2.8e-13 80.1 152 27.6
FvH4_2g08145 Fragaria vesca HOM05D008705 ORTHO05D000669 3.7e-13 79.7 152 27.6
MBI01_g39588_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.7e-13 79.7 273 23.8
MBI11_g22671_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.7e-13 79.7 211 25.1
MBI19_g30599_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.1e-12 78.2 206 24.3
Cfa009670 Carpinus fangiana HOM05D003120 ORTHO05D003568 1.4e-12 77.8 207 26.1
FAN20G2701 Fragaria x ananassa HOM05D008705 ORTHO05D000669 3.1e-12 76.6 152 27.0
MBI16_g11620_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.3e-12 75.9 233 26.2
Gohir.A01G183600 Gossypium hirsutum HOM05D001309 ORTHO05D005970 6.9e-12 75.5 234 25.2
PSO724G0226 Papaver somniferum HOM05D000791 ORTHO05D000669 6.9e-12 75.5 238 23.5
FAN15G0639 Fragaria x ananassa HOM05D008705 ORTHO05D000669 1.2e-11 74.7 159 25.8
Gorai.002G216700 Gossypium raimondii HOM05D001309 ORTHO05D000385 1.2e-11 74.7 234 25.2
MBI18_g07911_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.2e-11 74.7 230 23.9
CSS0028785 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 1.5e-11 74.3 66 57.6
FAN09G1129 Fragaria x ananassa HOM05D008705 ORTHO05D000669 1.5e-11 74.3 155 25.8
PGR044G2317 Punica granatum HOM05D001309 ORTHO05D000385 1.5e-11 74.3 212 27.8
Gohir.D01G174600 Gossypium hirsutum HOM05D001309 ORTHO05D000385 2.0e-11 73.9 234 24.8
HanXRQChr03g0064951 Helianthus annuus HOM05D005763 ORTHO05D005970 2.6e-11 73.6 235 24.7
MBI16_g20833_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.6e-11 73.6 141 31.2
MBI18_g01981_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.6e-11 73.6 212 23.1
MBI14_g07056_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.4e-11 73.2 141 31.2
MBI14_g16528_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.4e-11 73.2 141 31.2
MBI14_g38741_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.4e-11 73.2 141 31.2
MBI11_g21812_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.5e-11 72.8 141 31.2
MBI15_g01162_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.5e-11 72.8 141 31.9
Os04g0610000 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 4.5e-11 72.8 249 25.3
Dinv02106 Davidia involucrata HOM05D000791 ORTHO05D000669 5.9e-11 72.4 170 24.7
Migut.I00328 Erythranthe guttata HOM05D023261 ORTHO05D000222 5.9e-11 72.4 248 24.2
MBI12_g34835_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.9e-11 72.4 146 30.8
MBI07_g41667_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.7e-11 72.0 141 31.2
CSS0034948 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 1.0e-10 71.6 65 56.9
FAN11G3939 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.3e-10 71.2 243 26.3
FAN23G3051 Fragaria x ananassa HOM05D008485 ORTHO05D009647 1.3e-10 71.2 243 26.3
MBI12_g38023_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.3e-10 71.2 233 24.5
MBI11_g33696_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.7e-10 70.9 141 31.2
PSO832G4275 Papaver somniferum HOM05D008705 ORTHO05D000669 1.7e-10 70.9 154 26.0
Aqoxy4G01021 Aquilegia oxysepala HOM05D000791 ORTHO05D000669 2.2e-10 70.5 194 23.2
MBI13_g26213_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.2e-10 70.5 141 30.5
Rhsim09G0074300 Rhododendron simsii HOM05D000791 ORTHO05D000669 2.2e-10 70.5 213 25.8
Dinv25294 Davidia involucrata HOM05D010418 ORTHO05D000669 2.9e-10 70.1 114 28.9
MD09G1027200 Malus domestica HOM05D005763 ORTHO05D005970 2.9e-10 70.1 231 24.7
FAN13G3330 Fragaria x ananassa HOM05D008485 ORTHO05D009647 6.5e-10 68.9 243 25.9
FAN23G0398 Fragaria x ananassa HOM05D008485 ORTHO05D009647 6.5e-10 68.9 243 25.9
MBI19_g16213_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 6.5e-10 68.9 208 23.1
RcHm_v2.0_Chr1g0345631 Rosa chinensis HOM05D008705 ORTHO05D000669 6.5e-10 68.9 112 29.5
vmacro17806 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 6.5e-10 68.9 239 23.0
Sopen10g007560 Solanum pennellii HOM05D008291 ORTHO05D016169 8.5e-10 68.6 197 24.4
vmacro23182 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 8.5e-10 68.6 239 23.0
Dinv03037 Davidia involucrata HOM05D010418 ORTHO05D000669 1.1e-09 68.2 155 27.1
Dinv06647 Davidia involucrata HOM05D010418 ORTHO05D000669 1.1e-09 68.2 156 27.6
MBI12_g42096_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.1e-09 68.2 240 22.5
PSO384G0881 Papaver somniferum HOM05D017761 ORTHO05D000669 1.4e-09 67.8 145 31.0
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 1.4e-09 67.8 224 25.4
MBI15_g00064_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.9e-09 67.4 136 30.1
MBI19_g11511_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.9e-09 67.4 209 24.9
TWI73G0990 Tripterygium wilfordii HOM05D003120 ORTHO05D000669 1.9e-09 67.4 182 24.2
RcHm_v2.0_Chr6g0264941 Rosa chinensis HOM05D008485 ORTHO05D009647 3.2e-09 66.6 202 25.2
MBI05_g11193_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.2e-09 65.5 141 29.8
MBI08_g18899_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.2e-09 65.5 141 29.8
MBI05_g08210_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.4e-09 65.1 141 29.8
Prupe.5G199500 Prunus persica HOM05D008985 ORTHO05D000222 9.4e-09 65.1 205 22.4
Glyma.03G071600 Glycine max HOM05D001309 ORTHO05D000385 1.2e-08 64.7 248 25.0
MBI19_g39984_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.6e-08 64.3 141 28.4
Os02g0583500 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 1.6e-08 64.3 237 25.7
Os04g0519100 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 1.6e-08 64.3 236 26.3
Os11g0519100 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 1.6e-08 64.3 237 25.7
RcHm_v2.0_Chr1g0329081 Rosa chinensis HOM05D008485 ORTHO05D009647 1.6e-08 64.3 202 24.8
RcHm_v2.0_Chr3g0476041 Rosa chinensis HOM05D008705 ORTHO05D000669 1.6e-08 64.3 75 40.0
CANSAT21G2267 Cannabis sativa HOM05D009677 ORTHO05D011883 2.1e-08 63.9 213 23.5
MBI18_g39301_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.1e-08 63.9 137 28.5
RcHm_v2.0_Chr2g0106131 Rosa chinensis HOM05D008705 ORTHO05D000669 2.1e-08 63.9 77 40.3
MBI14_g38483_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 2.7e-08 63.5 231 24.2
MBI14_g32811_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.6e-08 63.2 141 30.5
Os04g0609900 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 3.6e-08 63.2 164 28.7
MBI03_g12026_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 4.7e-08 62.8 156 23.7
CANSAT56G1590 Cannabis sativa HOM05D009677 ORTHO05D011883 6.1e-08 62.4 247 20.2
Dinv09859 Davidia involucrata HOM05D000791 ORTHO05D000669 6.1e-08 62.4 175 22.9
MBI09_g18479_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 6.1e-08 62.4 242 24.8
Rhsim02G0136200 Rhododendron simsii HOM05D017301 ORTHO05D000669 6.1e-08 62.4 79 38.0
RcHm_v2.0_Chr0c17g0499961 Rosa chinensis HOM05D008705 ORTHO05D000669 6.1e-08 62.4 104 27.9
MBI16_g22304_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.9e-08 62.0 141 30.5
MD15G1434900 Malus domestica HOM05D005763 ORTHO05D005970 7.9e-08 62.0 240 24.6
vmacro14701 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 1.4e-07 61.2 186 25.8
vmacro14771 Vaccinium macrocarpon HOM05D008549 ORTHO05D010234 1.4e-07 61.2 186 25.8
MD11G1169500 Malus domestica HOM05D008985 ORTHO05D000222 2.3e-07 60.5 197 21.8
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 3.0e-07 60.1 224 24.6
MBI12_g22447_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 3.9e-07 59.7 140 30.0
Nitab4.5_0028686g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 3.9e-07 59.7 229 25.3
MBI15_g45923_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.1e-07 59.3 128 29.7
MBI16_g32806_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 5.1e-07 59.3 136 27.9
Solyc12g082720.1 Solanum lycopersicum HOM05D008291 ORTHO05D003568 5.1e-07 59.3 146 26.7
Lj4A276T51 Lonicera japonica HOM05D008705 ORTHO05D000669 6.7e-07 58.9 149 25.5
MBI09_g42525_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 8.8e-07 58.5 141 29.8
RcHm_v2.0_Chr2g0102381 Rosa chinensis HOM05D008705 ORTHO05D000669 8.8e-07 58.5 70 38.6
TAR629G2892 Trochodendron aralioides HOM05D001309 ORTHO05D000385 8.8e-07 58.5 187 25.1
Dinv00424 Davidia involucrata HOM05D010418 ORTHO05D000669 1.1e-06 58.2 116 30.2
Dinv03964 Davidia involucrata HOM05D010418 ORTHO05D000669 1.1e-06 58.2 116 30.2
MBI14_g38387_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.1e-06 58.2 141 27.7
MBI14_g01383_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-06 57.8 238 22.7
MBI16_g01168_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.5e-06 57.8 133 29.3
RcHm_v2.0_Chr1g0346821 Rosa chinensis HOM05D009879 ORTHO05D009647 1.5e-06 57.8 118 32.2
RcHm_v2.0_Chr4g0410891 Rosa chinensis HOM05D008705 ORTHO05D000669 1.5e-06 57.8 128 25.8
COL.COLO4_16289 Corchorus olitorius HOM05D059948 ORTHO05D010661 2.0e-06 57.4 207 24.2
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 2.6e-06 57.0 242 22.7
Dinv18123 Davidia involucrata HOM05D010418 ORTHO05D000669 3.3e-06 56.6 135 24.4
RcHm_v2.0_Chr1g0346841 Rosa chinensis HOM05D009879 ORTHO05D009647 3.3e-06 56.6 118 30.5
FvH4_7g09790 Fragaria vesca HOM05D009879 ORTHO05D009647 4.4e-06 56.2 118 32.2
FAN03G0178 Fragaria x ananassa HOM05D009879 ORTHO05D009647 4.4e-06 56.2 118 32.2
PSO063G4330 Papaver somniferum HOM05D017761 ORTHO05D000669 4.4e-06 56.2 121 26.4
PSO063G5169 Papaver somniferum HOM05D017761 ORTHO05D000669 4.4e-06 56.2 121 26.4
FAN06G0059 Fragaria x ananassa HOM05D009879 ORTHO05D009647 5.7e-06 55.8 119 30.3
FvH4_4g15892 Fragaria vesca HOM05D008705 ORTHO05D000669 7.4e-06 55.5 73 38.4
MBI05_g21268_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 7.4e-06 55.5 140 24.3
MBI17_g21608_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 9.7e-06 55.1 120 30.0
Os10g0195100 Oryza sativa ssp. japonica HOM05D001309 ORTHO05D000385 9.7e-06 55.1 233 21.0


User provided reference genes

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