Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026163 Camellia sinensis var. sinensis HOM05D000830 ORTHO05D112327 9.1e-38 159.8 86 100.0
CSS0038660 Camellia sinensis var. sinensis HOM05D000830 ORTHO05D112922 5.5e-35 150.6 86 95.3
CSS0016365 Camellia sinensis var. sinensis HOM05D000830 ORTHO05D110657 1.3e-31 139.4 87 89.7
CSS0040894 Camellia sinensis var. sinensis HOM05D000830 ORTHO05D003205 2.8e-07 58.5 50 66.0
Actinidia28480 Actinidia chinensis HOM05D000830 ORTHO05D003205 4.9e-07 57.8 83 44.6
DCAR_005367 Daucus carota HOM05D000830 ORTHO05D003205 6.3e-07 57.4 83 43.4
Psat2g093160 Pisum sativum HOM05D000830 ORTHO05D003205 6.3e-07 57.4 77 45.5
Rhsim01G0165800 Rhododendron simsii HOM05D000830 ORTHO05D003205 6.3e-07 57.4 50 64.0
TAR362G0033 Trochodendron aralioides HOM05D000830 ORTHO05D003205 6.3e-07 57.4 60 51.7
Atru.chr5.590 Acer truncatum HOM05D000830 ORTHO05D003205 8.3e-07 57.0 36 77.8
Ca_05117_v3 Cicer arietinum L. HOM05D000830 ORTHO05D003205 8.3e-07 57.0 75 40.0
Dinv32527 Davidia involucrata HOM05D000830 ORTHO05D003205 8.3e-07 57.0 36 77.8
FvH4_7g15510 Fragaria vesca HOM05D000830 ORTHO05D003205 8.3e-07 57.0 36 77.8
FAN01G2370 Fragaria x ananassa HOM05D000830 ORTHO05D003205 8.3e-07 57.0 36 77.8
FAN03G1578 Fragaria x ananassa HOM05D000830 ORTHO05D003205 8.3e-07 57.0 36 77.8
FAN06G1569 Fragaria x ananassa HOM05D000830 ORTHO05D003205 8.3e-07 57.0 36 77.8
FAN06G2870 Fragaria x ananassa HOM05D000830 ORTHO05D003205 8.3e-07 57.0 36 77.8
FAN10G0199 Fragaria x ananassa HOM05D000830 ORTHO05D003205 8.3e-07 57.0 36 77.8
FAN10G3648 Fragaria x ananassa HOM05D000830 ORTHO05D003205 8.3e-07 57.0 36 77.8
Gohir.D08G149000 Gossypium hirsutum HOM05D000830 ORTHO05D003205 8.3e-07 57.0 36 77.8
Gorai.004G154700 Gossypium raimondii HOM05D000830 ORTHO05D003205 8.3e-07 57.0 36 77.8
arahy.Tifrunner.gnm1.ann1.9D6GIC Arachis hypogaea HOM05D000830 ORTHO05D003205 1.1e-06 56.6 76 44.7
arahy.Tifrunner.gnm1.ann1.9M2414 Arachis hypogaea HOM05D000830 ORTHO05D003205 1.1e-06 56.6 76 44.7
COL.COLO4_10487 Corchorus olitorius HOM05D000830 ORTHO05D003205 1.4e-06 56.2 76 44.7
Gohir.A08G127800 Gossypium hirsutum HOM05D000830 ORTHO05D003205 1.4e-06 56.2 36 75.0
Lj2g0016918 Lotus japonicus HOM05D000830 ORTHO05D003205 1.4e-06 56.2 76 43.4
Sc09g0003060 Simmondsia chinensis HOM05D000830 ORTHO05D003205 1.4e-06 56.2 75 44.0
TPR.G18146 Trifolium pratense HOM05D000830 ORTHO05D003205 1.4e-06 56.2 83 42.2
CANSAT94G0016 Cannabis sativa HOM05D000830 ORTHO05D003205 1.8e-06 55.8 36 75.0
Lsat_1_v5_gn_7_2581 Lactuca sativa HOM05D000830 ORTHO05D003205 1.8e-06 55.8 36 75.0
Lj9P589T29 Lonicera japonica HOM05D000830 ORTHO05D003205 1.8e-06 55.8 36 75.0
Lalb_Chr10g0096591 Lupinus albus HOM05D000830 ORTHO05D003205 1.8e-06 55.8 36 75.0
Medtr8g028460 Medicago truncatula HOM05D000830 ORTHO05D003205 1.8e-06 55.8 83 42.2
Psat4g158040 Pisum sativum HOM05D000830 ORTHO05D003205 1.8e-06 55.8 83 42.2
RcHm_v2.0_Chr1g0357841 Rosa chinensis HOM05D000830 ORTHO05D003205 1.8e-06 55.8 36 75.0
ATR0706G163 Amborella trichopoda HOM05D000830 ORTHO05D003205 2.4e-06 55.5 76 46.1
arahy.Tifrunner.gnm1.ann1.VCZ1SA Arachis hypogaea HOM05D000830 ORTHO05D003205 2.4e-06 55.5 36 72.2
Ciclev10024550m.g Citrus clementina HOM05D000830 ORTHO05D003205 2.4e-06 55.5 36 72.2
Eucgr.D02328 Eucalyptus grandis HOM05D000830 ORTHO05D003205 2.4e-06 55.5 36 72.2
Glyma.02G128200 Glycine max HOM05D000830 ORTHO05D003205 2.4e-06 55.5 76 42.1
Hma1.2p1_1959F.1_g309080 Hydrangea macrophylla HOM05D000830 ORTHO05D003205 2.4e-06 55.5 36 75.0
Lalb_Chr04g0255251 Lupinus albus HOM05D000830 ORTHO05D003205 2.4e-06 55.5 76 42.1
Oeu010634.1 Olea europaea HOM05D000830 ORTHO05D003205 2.4e-06 55.5 36 72.2
Potri.002G165300 Populus trichocarpa HOM05D000830 ORTHO05D003205 2.4e-06 55.5 61 52.5
PGR031G1315 Punica granatum HOM05D000830 ORTHO05D003205 2.4e-06 55.5 58 55.2
RcHm_v2.0_Chr3g0455271 Rosa chinensis HOM05D000830 ORTHO05D003205 2.4e-06 55.5 77 41.6
vmacro20888 Vaccinium macrocarpon HOM05D000830 ORTHO05D003205 2.4e-06 55.5 36 72.2
Ciclev10003882m.g Citrus clementina HOM05D000830 ORTHO05D003205 3.1e-06 55.1 76 43.4
Duzib177G0077 Durio zibethinus HOM05D000830 ORTHO05D003205 3.1e-06 55.1 76 44.7
FvH4_6g06250 Fragaria vesca HOM05D000830 ORTHO05D003205 3.1e-06 55.1 77 41.6
FAN02G3053 Fragaria x ananassa HOM05D000830 ORTHO05D003205 3.1e-06 55.1 77 41.6
FAN05G5168 Fragaria x ananassa HOM05D000830 ORTHO05D003205 3.1e-06 55.1 77 41.6
FAN09G4287 Fragaria x ananassa HOM05D000830 ORTHO05D003205 3.1e-06 55.1 77 41.6
Nn1g01715 Nelumbo nucifera HOM05D000830 ORTHO05D003205 3.1e-06 55.1 36 69.4
TPR.G2675 Trifolium pratense HOM05D000830 ORTHO05D003205 3.1e-06 55.1 75 40.0
HPP92_005255 Vanilla planifolia HOM05D000830 ORTHO05D003205 3.1e-06 55.1 36 72.2
arahy.Tifrunner.gnm1.ann1.AMR0WB Arachis hypogaea HOM05D000830 ORTHO05D003205 4.1e-06 54.7 36 69.4
Cfa003863 Carpinus fangiana HOM05D000830 ORTHO05D003205 4.1e-06 54.7 36 69.4
Haze_15572 Corylus avellana HOM05D000830 ORTHO05D003205 4.1e-06 54.7 36 69.4
ECA236G1180 Erigeron canadensis HOM05D000830 ORTHO05D003205 4.1e-06 54.7 36 69.4
Manes.05G028400 Manihot esculenta HOM05D000830 ORTHO05D003205 4.1e-06 54.7 36 66.7
Medtr0010s0400 Medicago truncatula HOM05D000830 ORTHO05D003205 4.1e-06 54.7 77 41.6
RhsimUnG0064300 Rhododendron simsii HOM05D000830 ORTHO05D003205 4.1e-06 54.7 76 46.1
RhsimUnG0135100 Rhododendron simsii HOM05D000830 ORTHO05D003205 4.1e-06 54.7 76 46.1
Sabra02G0146200 Salix brachista HOM05D000830 ORTHO05D003205 4.1e-06 54.7 36 69.4
Thecc.01G351400 Theobroma cacao HOM05D000830 ORTHO05D003205 4.1e-06 54.7 36 75.0
TAR374G0806 Trochodendron aralioides HOM05D000830 ORTHO05D003205 4.1e-06 54.7 36 72.2
EL10Ac4g09395 Beta vulgaris HOM05D000830 ORTHO05D003205 5.4e-06 54.3 74 43.2
CiPaw.01G068600 Carya illinoinensis HOM05D000830 ORTHO05D003205 5.4e-06 54.3 36 69.4
Cc02_g33230 Coffea canephora HOM05D000830 ORTHO05D003205 5.4e-06 54.3 76 44.7
Lj3g0027285 Lotus japonicus HOM05D000830 ORTHO05D003205 5.4e-06 54.3 83 42.2
Nn4g25924 Nelumbo nucifera HOM05D000830 ORTHO05D003205 5.4e-06 54.3 76 46.1
QL04p055860 Quercus lobata HOM05D000830 ORTHO05D003205 5.4e-06 54.3 36 69.4
Thecc.05G310600 Theobroma cacao HOM05D000830 ORTHO05D003205 5.4e-06 54.3 76 43.4
GSVIVG01026979001 Vitis vinifera HOM05D000830 ORTHO05D003205 5.4e-06 54.3 36 72.2
ATR0051G002 Amborella trichopoda HOM05D000830 ORTHO05D003205 7.0e-06 53.9 36 72.2
ClCG03G017010 Citrullus lanatus HOM05D000830 ORTHO05D003205 7.0e-06 53.9 74 40.5
Phvul.010G105300 Phaseolus vulgaris HOM05D000830 ORTHO05D003205 7.0e-06 53.9 36 69.4
Potri.013G019400 Populus trichocarpa HOM05D000830 ORTHO05D003205 7.0e-06 53.9 76 42.1
PGR083G2451 Punica granatum HOM05D000830 ORTHO05D003205 7.0e-06 53.9 76 44.7
Sed0024173 Sechium edule HOM05D000830 ORTHO05D003205 7.0e-06 53.9 74 40.5
Sc23g0002520 Simmondsia chinensis HOM05D000830 ORTHO05D003205 7.0e-06 53.9 83 42.2
VMungo0331G1608 Vigna mungo HOM05D000830 ORTHO05D003205 7.0e-06 53.9 36 69.4
Aa31LG5G770 Aethionema arabicum HOM05D000830 ORTHO05D003205 9.2e-06 53.5 36 69.4
MSTRG.20866 Avicennia marina HOM05D000830 ORTHO05D003205 9.2e-06 53.5 36 72.2
BcaC03g16058 Brassica carinata HOM05D000830 ORTHO05D003205 9.2e-06 53.5 36 69.4
A02p24250 Brassica napus HOM05D000830 ORTHO05D003205 9.2e-06 53.5 36 69.4
C02p38240 Brassica napus HOM05D000830 ORTHO05D003205 9.2e-06 53.5 36 69.4
BolC2t09838H Brassica oleracea HOM05D000830 ORTHO05D003205 9.2e-06 53.5 36 69.4
BraA02t07414Z Brassica rapa HOM05D000830 ORTHO05D003205 9.2e-06 53.5 36 69.4
CiPaw.07G019600 Carya illinoinensis HOM05D000830 ORTHO05D003205 9.2e-06 53.5 76 42.1
CsaV3_1G038910 Cucumis sativus L. HOM05D000830 ORTHO05D003205 9.2e-06 53.5 74 40.5
ECA236G4898 Erigeron canadensis HOM05D000830 ORTHO05D003205 9.2e-06 53.5 74 40.5
HanXRQChr01g0002231 Helianthus annuus HOM05D000830 ORTHO05D003205 9.2e-06 53.5 63 46.0
Lj9P590T42 Lonicera japonica HOM05D000830 ORTHO05D003205 9.2e-06 53.5 33 75.8
Lalb_Chr10g0099481 Lupinus albus HOM05D000830 ORTHO05D003205 9.2e-06 53.5 74 39.2


User provided reference genes

Program Settings