Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 2.3e-62 241.9 110 100.0
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.8e-20 101.7 61 73.8
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.4e-19 99.8 61 73.8
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 9.2e-19 97.1 66 63.6
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 2.7e-18 95.5 73 65.8
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 1.7e-17 92.8 62 59.7
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 1.7e-17 92.8 66 60.6
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.0e-17 92.0 66 60.6
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 8.7e-17 90.5 66 62.1
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 4.3e-16 88.2 61 63.9
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 1.1e-14 83.6 62 53.2
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 1.1e-14 83.6 62 53.2
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 1.1e-14 83.6 62 53.2
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 1.1e-14 83.6 62 53.2
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 1.1e-14 83.6 62 53.2
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 1.8e-14 82.8 61 62.3
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 2.4e-14 82.4 66 56.1
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 3.1e-14 82.0 61 60.7
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 3.1e-14 82.0 61 59.0
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 4.0e-14 81.6 60 58.3
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 6.9e-14 80.9 67 52.2
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 1.5e-13 79.7 62 53.2
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 2.0e-13 79.3 62 56.5
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 2.6e-13 79.0 133 34.6
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 3.4e-13 78.6 64 54.7
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 3.4e-13 78.6 60 56.7
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 4.4e-13 78.2 69 50.7
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 4.4e-13 78.2 60 53.3
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 5.8e-13 77.8 62 53.2
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 9.9e-13 77.0 66 48.5
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 9.9e-13 77.0 77 46.8
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 1.3e-12 76.6 60 55.0
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 1.7e-12 76.3 73 50.7
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 1.7e-12 76.3 77 46.8
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 3.8e-12 75.1 72 47.2
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 3.8e-12 75.1 65 52.3
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 4.9e-12 74.7 58 53.4
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 4.9e-12 74.7 59 55.9
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 4.9e-12 74.7 60 58.3
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 8.4e-12 73.9 62 53.2
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 8.4e-12 73.9 77 45.5
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-11 73.6 62 51.6
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 2.4e-11 72.4 66 48.5
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 2.4e-11 72.4 64 56.2
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 2.4e-11 72.4 64 56.2
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 2.4e-11 72.4 68 45.6
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 3.2e-11 72.0 112 38.4
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 4.2e-11 71.6 62 53.2
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 4.2e-11 71.6 59 54.2
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 4.2e-11 71.6 60 56.7
CAN.G438.58 Capsicum annuum HOM05D005672 ORTHO05D003038 5.4e-11 71.2 55 58.2
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 7.1e-11 70.9 66 50.0
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 7.1e-11 70.9 81 44.4
Solyc03g120290.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 9.3e-11 70.5 46 60.9
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 1.2e-10 70.1 61 52.5
Ciclev10026944m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.6e-10 69.7 37 81.1
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 1.6e-10 69.7 62 51.6
Nn8g39241 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.1e-10 69.3 59 54.2
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 2.1e-10 69.3 61 49.2
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 2.1e-10 69.3 64 48.4
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 2.7e-10 68.9 82 42.7
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 3.5e-10 68.6 63 49.2
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 3.5e-10 68.6 63 49.2
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 3.5e-10 68.6 63 49.2
Nn8g39243 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.5e-10 68.6 62 50.0
Sopen03g039180 Solanum pennellii HOM05D005672 ORTHO05D003038 3.5e-10 68.6 55 52.7
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 6.0e-10 67.8 62 51.6
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 7.8e-10 67.4 126 32.5
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 1.0e-09 67.0 63 46.0
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.0e-09 67.0 61 50.8
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 1.0e-09 67.0 66 45.5
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.3e-09 66.6 63 50.8
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.7e-09 66.2 62 46.8
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 2.3e-09 65.9 62 48.4
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 3.0e-09 65.5 58 48.3
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 3.0e-09 65.5 58 48.3
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 3.0e-09 65.5 58 48.3
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 3.0e-09 65.5 67 43.3
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.9e-09 65.1 62 46.8
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 5.1e-09 64.7 61 47.5
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 5.1e-09 64.7 60 46.7
Nn8g39242 Nelumbo nucifera HOM05D005672 ORTHO05D003038 5.1e-09 64.7 62 46.8
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 6.6e-09 64.3 42 66.7
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 6.6e-09 64.3 61 50.8
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.5e-08 63.2 62 45.2
PGR102G1467 Punica granatum HOM05D005672 ORTHO05D003038 1.5e-08 63.2 70 40.0
FvH4_6g30990 Fragaria vesca HOM05D005672 ORTHO05D003038 2.5e-08 62.4 62 45.2
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 5.6e-08 61.2 61 47.5
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 5.6e-08 61.2 62 41.9
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 5.6e-08 61.2 61 45.9
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 7.3e-08 60.8 63 42.9
Oeu019543.1 Olea europaea HOM05D005672 ORTHO05D003038 9.6e-08 60.5 46 58.7
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.3e-07 60.1 61 44.3
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.3e-07 60.1 61 44.3
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.3e-07 60.1 64 48.4
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 1.3e-07 60.1 62 50.0
AT1G12672 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 1.6e-07 59.7 88 33.0
Sed0008395 Sechium edule HOM05D005672 ORTHO05D003038 2.1e-07 59.3 62 41.9
Duzib235G1402 Durio zibethinus HOM05D005672 ORTHO05D003038 4.8e-07 58.2 45 53.3
Prupe.3G073100 Prunus persica HOM05D005672 ORTHO05D003038 4.8e-07 58.2 48 52.1
MELO3C023363.2 Cucumis melo HOM05D005672 ORTHO05D003038 6.2e-07 57.8 60 43.3
MELO3C030573.2 Cucumis melo HOM05D005672 ORTHO05D003038 6.2e-07 57.8 38 60.5
Aqoxy4G01164 Aquilegia oxysepala HOM05D007540 ORTHO05D009531 8.1e-07 57.4 55 47.3
Ciclev10027444m.g Citrus clementina HOM05D005672 ORTHO05D003038 8.1e-07 57.4 110 37.3
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 8.1e-07 57.4 39 59.0
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 8.1e-07 57.4 39 59.0
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 8.1e-07 57.4 39 59.0
Sed0013481 Sechium edule HOM05D005672 ORTHO05D003038 8.1e-07 57.4 60 41.7
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 1.1e-06 57.0 68 41.2
Ciclev10026837m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.1e-06 57.0 67 50.7
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 1.1e-06 57.0 60 46.7
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 1.4e-06 56.6 74 37.8
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 1.8e-06 56.2 68 41.2
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 2.4e-06 55.8 62 40.3
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 2.4e-06 55.8 52 51.9
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 3.1e-06 55.5 60 43.3
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 4.0e-06 55.1 68 38.2
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 4.0e-06 55.1 67 40.3
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 5.3e-06 54.7 38 57.9
PSO630G0001 Papaver somniferum HOM05D007482 ORTHO05D003038 5.3e-06 54.7 59 45.8
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 5.3e-06 54.7 59 45.8
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 6.9e-06 54.3 67 40.3
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 6.9e-06 54.3 67 40.3
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 6.9e-06 54.3 63 39.7
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 6.9e-06 54.3 69 36.2
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 6.9e-06 54.3 69 36.2
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 6.9e-06 54.3 62 37.1
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 6.9e-06 54.3 60 45.0
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 6.9e-06 54.3 116 32.8
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 9.0e-06 53.9 102 34.3


User provided reference genes

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