Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.0e-134 483.4 247 100.0
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.3e-134 482.3 247 99.6
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 3.7e-108 395.2 252 78.6
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.9e-104 382.9 245 77.6
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.1e-101 373.6 270 72.2
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 3.5e-98 362.1 227 78.4
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 1.5e-96 356.7 272 71.3
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 9.4e-96 354.0 250 68.8
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 6.1e-95 351.3 255 70.2
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 9.8e-93 344.0 288 63.5
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 1.7e-92 343.2 251 70.1
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 2.8e-92 342.4 248 69.4
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 8.3e-92 340.9 253 70.4
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 3.1e-91 339.0 241 71.4
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 4.5e-90 335.1 260 66.5
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 1.0e-89 334.0 247 70.0
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 1.7e-89 333.2 254 66.1
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.2e-89 332.8 251 68.5
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 3.8e-89 332.0 248 68.1
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.8e-89 332.0 248 67.3
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 8.5e-89 330.9 252 67.9
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 1.1e-88 330.5 253 69.6
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 1.5e-88 330.1 258 67.8
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.5e-88 330.1 247 67.6
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 1.5e-88 330.1 247 67.2
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.9e-88 329.7 253 66.4
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 5.5e-88 328.2 249 65.5
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.5e-88 328.2 256 65.2
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 7.2e-88 327.8 247 66.8
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 7.2e-88 327.8 251 66.1
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 9.4e-88 327.4 255 66.3
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.2e-87 327.0 249 67.9
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.2e-87 327.0 247 67.2
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 1.2e-87 327.0 251 66.1
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 2.1e-87 326.2 247 65.6
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 2.7e-87 325.9 241 66.8
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 2.7e-87 325.9 247 68.4
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 4.7e-87 325.1 247 66.8
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 4.7e-87 325.1 247 66.8
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.7e-87 325.1 247 68.0
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 6.1e-87 324.7 248 67.7
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 8.0e-87 324.3 258 65.9
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 1.0e-86 323.9 274 63.9
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.0e-86 323.9 247 65.2
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 1.0e-86 323.9 249 67.5
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.4e-86 323.6 247 67.6
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 2.3e-86 322.8 243 67.5
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 3.0e-86 322.4 247 66.0
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 4.0e-86 322.0 273 63.4
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 5.2e-86 321.6 245 66.1
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 1.2e-85 320.5 252 64.7
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 1.5e-85 320.1 253 63.2
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 1.5e-85 320.1 252 64.7
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 4.4e-85 318.5 260 65.4
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 9.8e-85 317.4 244 64.8
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.3e-84 317.0 225 68.0
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.2e-84 316.2 270 63.7
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 2.2e-84 316.2 243 65.0
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 2.2e-84 316.2 249 67.9
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 2.8e-84 315.8 241 67.2
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 2.8e-84 315.8 252 64.7
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.1e-83 313.9 245 64.5
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 1.1e-83 313.9 252 64.7
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 3.1e-83 312.4 252 64.7
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 3.1e-83 312.4 219 71.7
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 7.0e-83 311.2 346 53.2
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 1.6e-82 310.1 224 70.1
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.6e-82 310.1 244 63.9
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 2.7e-82 309.3 249 62.7
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.0e-81 307.4 249 63.9
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.3e-81 307.0 247 62.8
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 1.7e-81 306.6 250 64.8
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 3.8e-81 305.4 246 61.8
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 5.0e-81 305.1 252 62.3
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.1e-80 303.9 250 62.0
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 1.9e-80 303.1 253 62.5
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.9e-80 303.1 248 64.5
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 9.5e-80 300.8 246 61.4
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 2.1e-79 299.7 251 62.2
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 2.8e-79 299.3 246 61.0
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 2.8e-79 299.3 250 61.6
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 3.6e-79 298.9 243 62.1
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 4.7e-79 298.5 243 62.1
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 4.7e-79 298.5 247 59.9
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 1.0e-78 297.4 247 61.1
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 1.4e-78 297.0 247 60.7
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.8e-78 296.6 248 60.9
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 5.2e-78 295.0 245 60.8
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 6.8e-78 294.7 249 63.1
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 2.6e-77 292.7 245 61.6
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 2.6e-77 292.7 248 64.9
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 3.4e-77 292.4 242 62.8
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 9.8e-77 290.8 247 59.1
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 1.3e-76 290.4 241 59.8
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 2.2e-76 289.7 248 60.1
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 2.9e-76 289.3 246 58.1
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 8.3e-76 287.7 247 61.1
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 8.3e-76 287.7 172 78.5
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 8.6e-73 277.7 249 54.2
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 3.3e-72 275.8 167 78.4
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 2.2e-68 263.1 215 64.2
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 2.3e-65 253.1 186 66.1
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 3.0e-65 252.7 221 57.5
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 6.6e-65 251.5 247 56.3
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 6.6e-65 251.5 206 61.7
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 1.5e-64 250.4 226 56.6
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 2.8e-63 246.1 241 53.9
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 3.6e-63 245.7 167 72.5
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 3.6e-63 245.7 245 54.3
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 2.3e-62 243.0 208 63.0
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 1.5e-61 240.4 198 62.1
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 1.3e-60 237.3 146 74.7
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.4e-59 233.8 187 62.6
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 3.2e-59 232.6 247 51.0
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 6.0e-58 228.4 427 39.1
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 3.0e-57 226.1 185 57.3
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 3.6e-55 219.2 185 62.7
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 6.2e-55 218.4 160 65.6
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 1.1e-54 217.6 187 61.5
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 2.3e-54 216.5 177 64.4
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 6.8e-54 214.9 215 55.8
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.2e-53 214.2 154 70.8
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 1.2e-53 214.2 154 70.8
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 2.2e-52 209.9 177 62.1
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 5.1e-49 198.7 242 43.8
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 9.9e-45 184.5 181 51.9
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 3.2e-43 179.5 162 62.3
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 1.6e-42 177.2 151 60.9
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 7.8e-42 174.9 116 70.7
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 1.5e-40 170.6 188 54.3
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.5e-40 169.9 158 58.2
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 6.2e-39 165.2 101 78.2
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 6.4e-36 155.2 175 53.7
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 9.3e-35 151.4 131 61.8
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 6.0e-34 148.7 183 45.9
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 1.5e-32 144.1 102 65.7
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 1.6e-31 140.6 127 54.3
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 4.9e-28 129.0 119 54.6
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 3.2e-27 126.3 118 52.5
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 1.5e-24 117.5 134 47.8
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 1.5e-24 117.5 134 47.8
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 8.1e-23 111.7 83 66.3
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 9.0e-22 108.2 248 31.0
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 2.9e-20 103.2 121 51.2
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 8.4e-20 101.7 67 67.2
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 3.5e-18 96.3 70 64.3
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.8e-17 94.0 65 64.6
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 7.4e-16 88.6 67 62.7
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 6.3e-15 85.5 107 51.4
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.2e-12 77.0 94 46.8
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 5.0e-12 75.9 52 67.3
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 4.2e-11 72.8 94 46.8
PGSC0003DMG400043354 Solanum tuberosum HOM05D004791 ORTHO05D005637 5.7e-08 62.4 80 52.5
Oeu020446.1 Olea europaea HOM05D004791 ORTHO05D005637 1.3e-07 61.2 84 45.2
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 1.4e-06 57.8 34 79.4
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 3.1e-06 56.6 40 67.5


User provided reference genes

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