Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 2.0e-106 389.0 185 100.0
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 2.9e-89 332.0 178 85.4
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 5.4e-88 327.8 184 85.3
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 1.7e-86 322.8 184 83.2
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 2.1e-84 315.8 184 77.7
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 3.6e-84 315.1 172 83.1
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 3.6e-84 315.1 172 83.1
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 6.2e-84 314.3 172 83.7
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 6.2e-84 314.3 182 78.6
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 4.0e-83 311.6 172 82.6
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 4.0e-83 311.6 179 78.2
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 4.0e-83 311.6 172 82.0
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 1.5e-82 309.7 174 80.5
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.5e-82 309.7 182 79.1
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 1.3e-81 306.6 184 77.7
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 1.1e-80 303.5 184 76.6
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.4e-80 303.1 173 79.2
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 1.9e-80 302.8 185 75.1
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 4.2e-80 301.6 185 76.2
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 5.4e-80 301.2 171 79.5
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 9.3e-80 300.4 172 78.5
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 9.3e-80 300.4 160 86.2
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 1.6e-79 299.7 171 78.9
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 1.6e-79 299.7 172 79.1
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 1.6e-79 299.7 172 82.6
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 3.5e-79 298.5 184 76.1
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 6.0e-79 297.7 174 78.2
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 7.8e-79 297.4 177 76.3
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 7.8e-79 297.4 175 82.3
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.3e-78 296.6 183 76.5
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 2.3e-78 295.8 173 80.3
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 3.9e-78 295.0 184 75.0
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 5.1e-78 294.7 173 78.0
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 8.7e-78 293.9 171 78.9
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 8.7e-78 293.9 175 76.6
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.3e-77 292.0 169 78.7
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 5.6e-77 291.2 168 79.8
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 9.6e-77 290.4 174 77.6
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 9.6e-77 290.4 172 77.3
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 2.1e-76 289.3 173 75.1
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.1e-76 289.3 171 77.2
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 4.8e-76 288.1 173 77.5
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 4.8e-76 288.1 172 76.7
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.1e-75 287.0 167 79.0
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.8e-75 286.2 173 76.9
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.8e-75 286.2 173 76.9
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 1.8e-75 286.2 172 78.5
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 5.3e-75 284.6 186 74.2
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 6.9e-75 284.3 171 77.2
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 9.0e-75 283.9 174 75.3
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 9.0e-75 283.9 172 75.6
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 1.5e-74 283.1 172 75.0
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 2.6e-74 282.3 168 77.4
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 3.4e-74 282.0 162 79.6
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 5.8e-74 281.2 187 72.7
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 9.9e-74 280.4 173 75.1
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.7e-73 279.6 175 75.4
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.7e-73 279.6 173 74.6
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 1.7e-73 279.6 169 74.0
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 2.9e-73 278.9 176 75.0
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 2.9e-73 278.9 185 73.0
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 1.1e-72 276.9 185 74.6
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.4e-72 276.6 184 70.7
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 1.9e-72 276.2 173 74.0
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 4.2e-72 275.0 173 75.1
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 5.4e-72 274.6 174 72.4
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 6.0e-71 271.2 180 70.6
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 6.0e-71 271.2 172 73.8
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 7.4e-69 264.2 181 66.9
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 1.6e-68 263.1 193 64.8
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 2.8e-68 262.3 174 68.4
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 8.1e-68 260.8 170 71.2
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 1.1e-67 260.4 184 64.1
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 1.1e-67 260.4 172 70.9
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 2.4e-67 259.2 181 65.2
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 9.0e-67 257.3 171 65.5
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.0e-66 256.1 175 68.0
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 9.9e-66 253.8 175 66.9
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 2.9e-65 252.3 174 67.8
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 2.9e-65 252.3 174 67.8
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 2.9e-65 252.3 174 66.7
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 3.8e-65 251.9 174 67.8
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 4.9e-65 251.5 174 66.7
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 8.4e-65 250.8 174 67.2
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 8.4e-65 250.8 173 69.4
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 1.4e-64 250.0 197 61.4
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.9e-64 249.6 172 65.1
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 3.2e-64 248.8 180 67.2
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.2e-63 246.9 175 64.0
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.2e-63 246.9 175 65.1
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.2e-63 246.9 175 65.1
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.1e-63 246.1 175 65.1
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 3.5e-63 245.4 173 67.6
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 7.9e-63 244.2 175 67.4
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.3e-62 243.4 173 63.0
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 3.9e-62 241.9 156 73.1
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 3.9e-62 241.9 150 74.0
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 1.3e-60 236.9 182 60.4
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.1e-59 233.8 174 62.1
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.4e-59 233.4 161 70.8
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 5.3e-59 231.5 180 60.6
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 9.0e-59 230.7 128 83.6
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 2.0e-58 229.6 160 68.8
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 4.5e-58 228.4 174 60.9
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 5.8e-58 228.0 161 64.0
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 1.0e-57 227.3 175 65.7
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 2.9e-57 225.7 180 58.3
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 6.5e-57 224.6 163 64.4
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 1.4e-56 223.4 169 62.1
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 9.3e-56 220.7 122 82.8
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 3.0e-54 215.7 173 56.1
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 5.1e-54 214.9 179 57.0
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.9e-53 213.0 124 78.2
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 6.9e-51 204.5 124 70.2
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 4.5e-50 201.8 112 79.5
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.8e-46 189.9 187 51.3
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.0e-46 189.1 169 54.4
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.9e-46 188.7 167 55.1
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.3e-45 185.7 169 54.4
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 7.4e-45 184.5 137 63.5
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.1e-43 177.6 153 57.5
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.6e-42 176.0 164 52.4
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 4.6e-39 165.2 118 66.9
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 3.0e-38 162.5 183 47.5
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.7e-38 161.4 137 56.2
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.3e-35 151.8 126 58.7
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 2.0e-34 149.8 168 45.8
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.0e-34 149.8 168 46.4
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 5.9e-34 148.3 100 66.0
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.0e-33 147.5 103 62.1
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 2.9e-33 146.0 169 46.7
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.2e-28 129.8 78 73.1
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.9e-24 116.7 117 51.3
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 2.5e-24 116.3 185 37.3
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.7e-20 103.6 89 52.8
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 3.8e-17 92.4 57 80.7
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 7.5e-13 78.2 48 75.0
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 7.0e-11 71.6 45 71.1
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.6e-10 70.5 44 70.5
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 2.0e-10 70.1 44 70.5
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.3e-09 66.6 53 56.6
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 1.5e-08 63.9 100 38.0
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 3.6e-07 59.3 45 62.2


User provided reference genes

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