Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026125 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 3.7e-156 555.1 330 100.0
CSS0033391 Camellia sinensis var. sinensis HOM05D006413 ORTHO05D007722 1.4e-155 553.1 330 99.7
Actinidia28080 Actinidia chinensis HOM05D006413 ORTHO05D007722 4.4e-48 196.1 277 46.2
vmacro12628 Vaccinium macrocarpon HOM05D006413 ORTHO05D007722 3.5e-45 186.4 161 65.2
Rhsim01G0182400 Rhododendron simsii HOM05D006413 ORTHO05D007722 1.9e-43 180.6 147 69.4
GSVIVG01027488001 Vitis vinifera HOM05D006413 ORTHO05D007722 9.5e-35 151.8 165 49.1
CiPaw.02G050700 Carya illinoinensis HOM05D006413 ORTHO05D007722 7.5e-32 142.1 155 51.0
Dinv34265 Davidia involucrata HOM05D006413 ORTHO05D007722 3.0e-28 130.2 222 42.3
QL05p084380 Quercus lobata HOM05D006413 ORTHO05D007722 5.0e-28 129.4 148 53.4
Hma1.2p1_0074F.1_g038990 Hydrangea macrophylla HOM05D006413 ORTHO05D007722 8.6e-28 128.6 147 53.7
TWI14G0709 Tripterygium wilfordii HOM05D006413 ORTHO05D007722 7.3e-27 125.6 175 44.0
TAR629G2159 Trochodendron aralioides HOM05D006413 ORTHO05D007722 9.5e-27 125.2 147 49.0
Sabra02G0131800 Salix brachista HOM05D006413 ORTHO05D007722 4.7e-26 122.9 171 45.6
Cfa002153 Carpinus fangiana HOM05D006413 ORTHO05D007722 1.1e-25 121.7 158 50.0
Nn1g00502 Nelumbo nucifera HOM05D006413 ORTHO05D007722 6.8e-25 119.0 143 49.0
arahy.Tifrunner.gnm1.ann1.JWHJ24 Arachis hypogaea HOM05D006413 ORTHO05D007722 8.9e-25 118.6 155 48.4
Potri.002G183900 Populus trichocarpa HOM05D006413 ORTHO05D007722 1.2e-24 118.2 171 43.9
Oeu059793.1 Olea europaea HOM05D006413 ORTHO05D007722 1.5e-24 117.9 168 44.6
Thecc.01G329000 Theobroma cacao HOM05D006413 ORTHO05D007722 5.8e-24 115.9 153 50.3
MBI12_g23070_MAGBIO Magnolia biondii HOM05D006413 ORTHO05D007722 9.8e-24 115.2 164 43.9
Gohir.D12G122400 Gossypium hirsutum HOM05D006413 ORTHO05D007722 2.2e-23 114.0 153 50.3
Gorai.008G133200 Gossypium raimondii HOM05D006413 ORTHO05D007722 2.2e-23 114.0 153 50.3
Duzib138G1460 Durio zibethinus HOM05D006413 ORTHO05D007722 2.9e-23 113.6 153 52.9
Gohir.A12G118600 Gossypium hirsutum HOM05D006413 ORTHO05D007722 7.1e-22 109.0 165 45.5
Manes.01G237000 Manihot esculenta HOM05D006413 ORTHO05D007722 7.1e-22 109.0 167 42.5
COL.COLO4_23085 Corchorus olitorius HOM05D006413 ORTHO05D007722 1.2e-21 108.2 153 49.0
Lj5g0015604 Lotus japonicus HOM05D006413 ORTHO05D007722 1.6e-21 107.8 161 44.7
Lsat_1_v5_gn_5_42660 Lactuca sativa HOM05D006413 ORTHO05D007722 2.7e-21 107.1 132 49.2
Cpa.g.sc57.58 Carica papaya HOM05D006413 ORTHO05D007722 3.5e-21 106.7 157 45.9
Cc11_g00050 Coffea canephora HOM05D006413 ORTHO05D007722 3.5e-21 106.7 159 45.3
Prupe.3G022900 Prunus persica HOM05D006413 ORTHO05D007722 3.5e-21 106.7 147 44.9
Lj3g0007654 Lotus japonicus HOM05D006413 ORTHO05D007722 4.6e-21 106.3 161 44.1
Medtr2g101420 Medicago truncatula HOM05D006413 ORTHO05D007722 4.6e-21 106.3 138 47.1
CANSAT01G2278 Cannabis sativa HOM05D006413 ORTHO05D007722 7.8e-21 105.5 153 47.7
ECA246G2509 Erigeron canadensis HOM05D006413 ORTHO05D007722 2.3e-20 104.0 110 51.8
FAN02G2312 Fragaria x ananassa HOM05D006413 ORTHO05D007722 1.5e-19 101.3 150 42.7
MSTRG.12126 Avicennia marina HOM05D006413 ORTHO05D007722 2.5e-19 100.5 144 45.1
RcHm_v2.0_Chr2g0149491 Rosa chinensis HOM05D006413 ORTHO05D007722 3.3e-19 100.1 151 45.7
MD05G1207200 Malus domestica HOM05D006413 ORTHO05D007722 7.3e-19 99.0 158 46.2
MD17G1162400 Malus domestica HOM05D006413 ORTHO05D007722 7.3e-19 99.0 158 46.2
Atru.chr5.817 Acer truncatum HOM05D006413 ORTHO05D007722 9.5e-19 98.6 260 35.4
TPR.G31784 Trifolium pratense HOM05D006413 ORTHO05D007722 1.6e-18 97.8 142 47.9
FAN09G4880 Fragaria x ananassa HOM05D006413 ORTHO05D007722 4.7e-18 96.3 150 41.3
FvH4_6g36970 Fragaria vesca HOM05D006413 ORTHO05D007722 6.2e-18 95.9 150 42.0
FAN14G2652 Fragaria x ananassa HOM05D006413 ORTHO05D007722 8.1e-18 95.5 150 42.0
DCAR_001546 Daucus carota HOM05D006413 ORTHO05D007722 3.1e-17 93.6 161 42.2
SEGI_13405 Sequoiadendron giganteum HOM05D006413 ORTHO05D007722 3.1e-17 93.6 121 45.5
Sc26g0002030 Simmondsia chinensis HOM05D006413 ORTHO05D007722 5.2e-17 92.8 146 41.1
Phvul.005G185400 Phaseolus vulgaris HOM05D006413 ORTHO05D007722 6.8e-17 92.4 149 41.6
MELO3C024283.2 Cucumis melo HOM05D006413 ORTHO05D007722 1.5e-16 91.3 179 35.8
Sopen03g012060 Solanum pennellii HOM05D006413 ORTHO05D007722 1.5e-16 91.3 124 48.4
SGA_v2.0_scaffold12G06253 Striga asiatica HOM05D006413 ORTHO05D007722 2.6e-16 90.5 152 42.8
ClCG09G001640 Citrullus lanatus HOM05D006413 ORTHO05D007722 3.4e-16 90.1 181 34.8
HanXRQChr12g0379901 Helianthus annuus HOM05D006413 ORTHO05D007722 3.4e-16 90.1 77 59.7
Thhalv10001331m.g Eutrema salsugineum HOM05D006413 ORTHO05D007722 4.4e-16 89.7 177 39.0
Aa31LG1G28280 Aethionema arabicum HOM05D006413 ORTHO05D007722 5.8e-16 89.4 174 41.4
HPP92_025405 Vanilla planifolia HOM05D006413 ORTHO05D007722 2.2e-15 87.4 132 43.2
Carub.0004s2964 Capsella rubella HOM05D006413 ORTHO05D007722 3.7e-15 86.7 177 40.1
CsaV3_7G033700 Cucumis sativus L. HOM05D006413 ORTHO05D007722 3.7e-15 86.7 178 33.1
Ca_00994_v3 Cicer arietinum L. HOM05D006413 ORTHO05D007722 4.9e-15 86.3 158 38.0
Psat5g305280 Pisum sativum HOM05D006413 ORTHO05D007722 4.9e-15 86.3 130 42.3
Glyma.13G372900 Glycine max HOM05D006413 ORTHO05D007722 8.4e-15 85.5 77 57.1
CDE12G0027 Ceratophyllum demersum HOM05D006413 ORTHO05D007722 1.9e-14 84.3 158 39.2
Nitab4.5_0000911g0040 Nicotiana tabacum HOM05D006413 ORTHO05D007722 1.9e-14 84.3 122 42.6
VMungo1080G0934 Vigna mungo HOM05D006413 ORTHO05D007722 1.9e-14 84.3 148 39.9
A05p00920 Brassica napus HOM05D006413 ORTHO05D007722 4.1e-14 83.2 175 36.6
AUR62014504 Chenopodium quinoa HOM05D006413 ORTHO05D007722 9.2e-14 82.0 190 38.9
AUR62038031 Chenopodium quinoa HOM05D006413 ORTHO05D007722 9.2e-14 82.0 191 35.1
PGR042G2300 Punica granatum HOM05D006413 ORTHO05D007722 9.2e-14 82.0 62 64.5
Nitab4.5_0000001g0010 Nicotiana tabacum HOM05D006413 ORTHO05D007722 1.2e-13 81.6 209 34.0
EL10Ac1g00655 Beta vulgaris HOM05D006413 ORTHO05D007722 2.7e-13 80.5 118 44.9
BraA05t19093Z Brassica rapa HOM05D006413 ORTHO05D007722 2.7e-13 80.5 183 35.0
AL4G46380 Arabidopsis lyrata HOM05D006413 ORTHO05D007722 3.5e-13 80.1 167 38.3
Migut.G00788 Erythranthe guttata HOM05D006413 ORTHO05D007722 4.6e-13 79.7 156 36.5
AT2G46915 Arabidopsis thaliana HOM05D006413 ORTHO05D007722 6.0e-13 79.3 77 58.4
Ah.05g177080 Amaranthus hybridus HOM05D006413 ORTHO05D007722 7.8e-13 79.0 188 37.8
BcaC02g12635 Brassica carinata HOM05D006413 ORTHO05D007722 1.7e-12 77.8 165 37.0
Eucgr.E00011 Eucalyptus grandis HOM05D006413 ORTHO05D007722 3.9e-12 76.6 132 38.6
C04p01070 Brassica napus HOM05D006413 ORTHO05D007722 8.6e-12 75.5 174 33.3
BolC4t21760H Brassica oleracea HOM05D006413 ORTHO05D007722 8.6e-12 75.5 105 44.8
CARHR142270 Cardamine hirsuta HOM05D006413 ORTHO05D007722 1.5e-11 74.7 77 53.2
CAN.G317.7 Capsicum annuum HOM05D006413 ORTHO05D007722 1.9e-11 74.3 109 44.0
Glyma.19G019600 Glycine max HOM05D006413 ORTHO05D007722 2.5e-11 73.9 67 56.7
Pp3c4_17360 Physcomitrium patens HOM05D006413 ORTHO05D007722 2.5e-11 73.9 67 47.8
Sp4g28940 Schrenkiella parvula HOM05D006413 ORTHO05D007722 2.5e-11 73.9 167 35.9
THA.LOC104802107 Tarenaya hassleriana HOM05D006413 ORTHO05D007722 4.3e-11 73.2 166 38.0
Lalb_Chr24g0392741 Lupinus albus HOM05D006413 ORTHO05D007722 9.6e-11 72.0 87 49.4
Hund26914 Selenicereus undatus HOM05D006413 ORTHO05D007722 4.7e-10 69.7 134 37.3
Aqoxy5G04399 Aquilegia oxysepala HOM05D006413 ORTHO05D007722 8.1e-10 68.9 72 52.8
Os06g0104000 Oryza sativa ssp. japonica HOM05D006413 ORTHO05D007722 8.9e-09 65.5 74 50.0
Zm00001eb268520 Zea mays HOM05D006413 ORTHO05D007722 2.6e-08 63.9 99 39.4
Mapoly0083s0051 Marchantia polymorpha HOM05D006413 ORTHO05D007722 9.9e-08 62.0 81 46.9


User provided reference genes

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