Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 1.1e-299 1032.7 594 100.0
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 1.3e-204 716.8 618 70.7
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 4.0e-185 652.1 607 69.4
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 5.8e-176 621.7 580 70.0
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 3.3e-155 552.7 535 69.2
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 1.4e-153 547.4 588 61.1
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 6.9e-153 545.0 609 59.4
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 2.9e-151 539.7 554 64.4
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 1.9e-150 537.0 575 63.0
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 3.0e-148 529.6 523 65.2
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 2.6e-147 526.6 615 59.2
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 1.8e-145 520.4 517 67.1
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 9.1e-145 518.1 544 62.9
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 1.4e-142 510.8 607 55.4
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 2.2e-138 496.9 518 63.5
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 9.1e-137 491.5 585 57.9
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 9.1e-137 491.5 595 57.8
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 2.0e-136 490.3 581 58.0
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 4.5e-136 489.2 579 58.2
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 1.3e-135 487.6 601 52.1
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 2.2e-135 486.9 489 66.7
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 2.5e-134 483.4 526 62.7
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 9.4e-134 481.5 581 57.3
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 1.6e-133 480.7 616 54.5
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 2.7e-133 479.9 489 65.8
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 4.7e-133 479.2 489 66.1
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 3.0e-132 476.5 496 64.5
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 1.2e-131 474.6 588 58.3
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 6.3e-130 468.8 519 61.5
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 1.4e-129 467.6 565 58.9
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 3.1e-129 466.5 599 54.1
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 4.5e-128 462.6 467 66.6
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 5.0e-127 459.1 559 58.3
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 4.2e-126 456.1 450 66.9
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 2.7e-125 453.4 508 61.2
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 2.0e-123 447.2 454 63.0
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 5.7e-123 445.7 508 60.4
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 1.3e-122 444.5 443 64.8
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 1.8e-121 440.7 439 65.1
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 7.0e-121 438.7 474 63.3
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 1.6e-120 437.6 467 61.2
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 2.7e-120 436.8 568 54.6
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 1.3e-119 434.5 606 53.8
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 6.5e-119 432.2 448 65.0
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 3.2e-118 429.9 443 63.2
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 2.3e-116 423.7 465 60.0
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 2.3e-116 423.7 383 73.9
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 2.3e-116 423.7 620 52.3
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 3.0e-116 423.3 600 52.3
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 2.0e-115 420.6 506 60.3
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 5.7e-115 419.1 584 53.1
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 1.7e-114 417.5 470 59.4
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 3.7e-114 416.4 519 57.8
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 4.9e-114 416.0 561 55.4
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 5.4e-113 412.5 586 52.6
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 7.0e-113 412.1 458 61.8
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 1.2e-112 411.4 565 53.6
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 1.2e-112 411.4 442 60.9
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 3.8e-111 406.4 464 60.3
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 1.5e-110 404.4 516 57.8
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 8.9e-108 395.2 561 50.8
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 4.4e-107 392.9 449 59.0
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 7.5e-107 392.1 450 58.7
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 6.4e-106 389.0 615 49.3
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 9.2e-105 385.2 452 59.1
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 2.7e-104 383.6 443 58.9
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 6.6e-103 379.0 454 59.5
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 2.5e-102 377.1 405 64.4
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 9.5e-102 375.2 524 53.6
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 1.6e-101 374.4 465 58.3
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 1.6e-101 374.4 524 51.5
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 3.6e-101 373.2 492 54.1
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 4.7e-101 372.9 464 59.1
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 4.0e-100 369.8 505 52.9
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 5.2e-100 369.4 474 58.2
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 1.5e-99 367.9 468 56.8
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 2.0e-99 367.5 563 51.7
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 2.0e-99 367.5 441 44.0
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 9.8e-99 365.2 421 61.3
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 4.9e-98 362.8 454 58.1
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 5.4e-97 359.4 516 54.1
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 6.6e-95 352.4 501 53.7
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 2.5e-94 350.5 501 53.9
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 4.3e-94 349.7 442 55.4
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 8.1e-93 345.5 382 46.6
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 8.1e-93 345.5 382 46.6
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 2.6e-91 340.5 418 59.8
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 8.3e-90 335.5 486 50.4
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 4.6e-88 329.7 565 45.8
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 2.1e-85 320.9 486 47.3
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 2.0e-83 314.3 507 50.9
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 3.2e-81 307.0 503 49.9
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 2.0e-75 287.7 495 49.7
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 1.6e-72 278.1 535 47.3
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 4.0e-68 263.5 442 46.8
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 4.0e-68 263.5 442 46.8
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 1.8e-60 238.0 355 38.9
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 1.8e-60 238.0 355 38.9
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 3.8e-58 230.3 384 50.5
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 7.4e-54 216.1 201 49.8
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 3.1e-52 210.7 202 50.0
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 9.0e-52 209.1 218 49.1
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 1.3e-47 195.3 320 37.5
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 3.9e-31 140.6 265 37.7
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 3.8e-10 70.9 147 32.0
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 1.9e-09 68.6 111 35.1
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 1.9e-09 68.6 111 35.1
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 2.5e-09 68.2 159 28.3
TPR.G29077 Trifolium pratense HOM05D008684 ORTHO05D010796 1.8e-07 62.0 155 27.7
Ciclev10018682m.g Citrus clementina HOM05D007128 ORTHO05D009059 2.3e-07 61.6 152 29.6
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 4.0e-07 60.8 141 29.1
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 4.0e-07 60.8 145 27.6
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 5.2e-07 60.5 166 24.1
Hund13165 Selenicereus undatus HOM05D007093 ORTHO05D008910 8.8e-07 59.7 48 60.4
CiPaw.10G023600 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.5e-06 58.9 406 20.2
Medtr7g082160 Medicago truncatula HOM05D008684 ORTHO05D010796 1.5e-06 58.9 155 27.1
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 1.5e-06 58.9 182 24.2
Sc03g0010580 Simmondsia chinensis HOM05D002453 ORTHO05D008746 1.5e-06 58.9 163 27.6
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 1.5e-06 58.9 148 26.4
AagrBONN_evm.TU.Sc2ySwM_369.154 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-06 58.5 434 20.0
Potri.016G085300 Populus trichocarpa HOM05D000855 ORTHO05D008530 2.0e-06 58.5 183 25.1
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 2.6e-06 58.2 154 33.8
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 2.6e-06 58.2 141 29.1
TPR.G12012 Trifolium pratense HOM05D008234 ORTHO05D010422 2.6e-06 58.2 198 26.3
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 3.4e-06 57.8 159 25.2
Lj7P707T11 Lonicera japonica HOM05D008234 ORTHO05D010422 3.4e-06 57.8 147 32.7
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 3.4e-06 57.8 159 24.5
HanXRQChr02g0048071 Helianthus annuus HOM05D008234 ORTHO05D010422 4.4e-06 57.4 146 30.8
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 4.4e-06 57.4 141 25.5
SEGI_16813 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 4.4e-06 57.4 145 24.8
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 5.7e-06 57.0 159 25.2
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 5.7e-06 57.0 141 27.7
RcHm_v2.0_Chr4g0384761 Rosa chinensis HOM05D000001 ORTHO05D010280 5.7e-06 57.0 145 26.9
AagrBONN_evm.TU.Sc2ySwM_362.71 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.5e-06 56.6 187 24.6
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 9.8e-06 56.2 140 25.7
PSO063G5446 Papaver somniferum HOM05D000001 ORTHO05D000003 9.8e-06 56.2 177 23.7
TAR626G0276 Trochodendron aralioides HOM05D000001 ORTHO05D000003 9.8e-06 56.2 163 25.2


User provided reference genes

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