Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 4.0e-148 528.1 274 100.0
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 7.9e-128 460.7 275 84.4
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 2.6e-126 455.7 273 82.8
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 3.0e-119 432.2 248 86.3
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 5.7e-118 427.9 271 79.7
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 7.4e-118 427.6 273 78.8
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 1.3e-117 426.8 272 77.2
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 1.7e-117 426.4 271 78.2
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 2.2e-117 426.0 274 79.6
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 4.8e-117 424.9 272 78.3
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 1.3e-114 416.8 264 79.5
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 1.3e-114 416.8 242 88.4
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 1.1e-113 413.7 273 76.6
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 1.5e-113 413.3 272 80.1
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 9.4e-113 410.6 245 83.7
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 3.6e-112 408.7 253 79.8
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 1.8e-111 406.4 253 79.4
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.8e-111 406.4 253 79.4
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 3.0e-111 405.6 253 79.8
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 4.0e-111 405.2 246 81.3
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 4.0e-111 405.2 280 73.2
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 5.2e-111 404.8 276 75.4
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 5.2e-111 404.8 280 73.6
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 5.2e-111 404.8 280 73.6
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 8.8e-111 404.1 260 77.3
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 8.8e-111 404.1 249 79.9
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 1.2e-110 403.7 280 72.9
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 2.0e-110 402.9 271 77.9
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.6e-110 402.5 270 75.2
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 2.6e-110 402.5 263 75.3
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 2.6e-110 402.5 251 78.9
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 9.7e-110 400.6 271 75.3
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 9.7e-110 400.6 272 73.5
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.3e-109 400.2 314 70.7
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 2.2e-109 399.4 251 79.3
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 2.2e-109 399.4 256 77.0
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 2.8e-109 399.1 250 77.6
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 6.3e-109 397.9 251 78.9
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 8.2e-109 397.5 251 78.5
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.1e-108 397.1 251 78.9
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.8e-108 396.4 314 70.7
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.8e-108 396.4 271 74.2
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 2.4e-108 396.0 259 75.3
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 2.0e-107 392.9 237 82.3
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 5.9e-107 391.3 272 71.7
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 7.7e-107 391.0 247 77.7
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 1.0e-106 390.6 252 75.8
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 1.7e-106 389.8 280 72.5
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 2.2e-106 389.4 271 70.8
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 8.5e-106 387.5 319 66.1
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.5e-105 386.7 287 69.7
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.9e-105 386.3 256 74.6
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 3.2e-105 385.6 257 74.3
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.2e-105 385.6 284 70.1
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 4.2e-105 385.2 251 74.9
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 2.1e-104 382.9 256 77.3
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 4.7e-104 381.7 253 74.7
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 2.3e-103 379.4 251 74.5
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 4.0e-103 378.6 274 70.4
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 4.0e-103 378.6 274 70.4
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 8.8e-103 377.5 251 74.1
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 8.8e-103 377.5 251 74.1
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 1.2e-102 377.1 250 74.4
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 1.2e-102 377.1 250 74.4
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.2e-102 377.1 276 70.3
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 2.0e-102 376.3 271 69.0
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 2.0e-102 376.3 257 71.2
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 2.6e-102 375.9 255 76.1
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 5.7e-102 374.8 269 71.0
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 7.5e-102 374.4 271 75.3
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 4.8e-101 371.7 292 68.5
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 8.3e-101 370.9 245 76.3
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 1.1e-100 370.5 248 73.0
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 1.4e-100 370.2 272 73.5
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 1.2e-99 367.1 275 69.8
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 7.7e-99 364.4 268 69.4
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 2.9e-98 362.5 256 71.1
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.1e-97 360.5 268 67.2
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 3.2e-97 359.0 244 72.1
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 4.2e-97 358.6 274 66.4
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 5.5e-97 358.2 246 72.0
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 1.2e-96 357.1 270 67.0
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 4.7e-96 355.1 269 70.3
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.0e-95 354.0 247 71.3
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 1.8e-95 353.2 269 66.5
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 4.0e-95 352.1 272 66.2
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 5.7e-94 348.2 241 71.0
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 6.3e-93 344.7 272 64.7
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 2.0e-91 339.7 273 67.0
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 5.0e-90 335.1 205 80.5
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 7.3e-89 331.3 209 78.0
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 7.5e-86 321.2 250 66.8
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 8.3e-85 317.8 253 64.8
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 5.4e-84 315.1 272 62.9
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 8.6e-82 307.8 272 62.5
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 4.3e-81 305.4 276 63.4
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 5.6e-81 305.1 271 62.0
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 5.6e-81 305.1 266 65.0
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 6.2e-80 301.6 251 67.3
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 2.3e-79 299.7 172 83.1
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.7e-77 293.5 170 81.8
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 2.2e-77 293.1 239 64.0
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 2.9e-77 292.7 280 57.5
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 6.4e-77 291.6 273 62.3
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.4e-76 290.4 272 61.4
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 2.6e-70 269.6 249 63.5
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 1.3e-69 267.3 276 53.6
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 4.9e-69 265.4 344 50.6
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 5.1e-66 255.4 168 75.6
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.4e-60 237.3 158 74.1
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 1.9e-60 236.9 291 47.8
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.4e-55 219.9 171 67.3
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 4.6e-51 205.7 221 53.8
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 5.6e-49 198.7 239 47.3
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.8e-47 193.7 252 44.4
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 5.6e-41 172.2 125 69.6
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 4.8e-40 169.1 248 40.3
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.1e-35 153.7 110 70.9
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 7.4e-33 145.2 86 80.2
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-32 144.1 155 52.9
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 1.3e-29 134.4 76 84.2
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 8.7e-26 121.7 131 51.9
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 8.2e-24 115.2 94 61.7
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.4e-18 97.8 78 60.3
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 3.7e-16 89.7 186 32.8
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 4.1e-15 86.3 69 63.8
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 4.1e-15 86.3 77 61.0
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 5.9e-14 82.4 39 92.3
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.7e-13 80.9 73 61.6
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 1.8e-10 70.9 66 54.5
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 3.0e-10 70.1 37 86.5
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 3.0e-10 70.1 37 86.5
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 6.3e-08 62.4 55 61.8
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 1.4e-07 61.2 55 56.4
Solyc01g057003.1 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.5e-06 57.8 40 62.5


User provided reference genes

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