Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026088 Camellia sinensis var. sinensis HOM05D009709 ORTHO05D003288 5.5e-50 200.7 101 100.0
FAN05G4416 Fragaria x ananassa HOM05D009709 ORTHO05D003288 5.9e-12 74.3 70 52.9
EL10Ac4g09814 Beta vulgaris HOM05D000162 ORTHO05D000090 2.1e-09 65.9 67 47.8
RcHm_v2.0_Chr5g0074181 Rosa chinensis HOM05D009709 ORTHO05D003288 3.6e-09 65.1 70 50.0
TAR362G0788 Trochodendron aralioides HOM05D000162 ORTHO05D003288 3.6e-09 65.1 74 48.6
Peaxi162Scf00342g00098 Petunia axillaris HOM05D011051 ORTHO05D003288 6.1e-09 64.3 74 40.5
HanXRQChr07g0205001 Helianthus annuus HOM05D000162 ORTHO05D000090 8.0e-09 63.9 64 50.0
QL03p013262 Quercus lobata HOM05D000162 ORTHO05D000090 8.0e-09 63.9 77 39.0
arahy.Tifrunner.gnm1.ann1.M2HM0V Arachis hypogaea HOM05D018308 ORTHO05D003288 1.0e-08 63.5 68 47.1
EL10Ac4g09525 Beta vulgaris HOM05D000162 ORTHO05D000090 1.4e-08 63.2 70 38.6
EL10Ac4g09526 Beta vulgaris HOM05D000162 ORTHO05D003288 1.4e-08 63.2 70 38.6
RcHm_v2.0_Chr5g0074961 Rosa chinensis HOM05D009709 ORTHO05D003288 1.4e-08 63.2 62 50.0
HanXRQChr08g0216881 Helianthus annuus HOM05D022251 ORTHO05D003288 1.8e-08 62.8 64 46.9
Prupe.6G195700 Prunus persica HOM05D009709 ORTHO05D003288 1.8e-08 62.8 67 47.8
Migut.F00854 Erythranthe guttata HOM05D000162 ORTHO05D000090 3.0e-08 62.0 90 40.0
FAN18G0982 Fragaria x ananassa HOM05D009709 ORTHO05D003288 3.0e-08 62.0 55 52.7
FAN21G2825 Fragaria x ananassa HOM05D000162 ORTHO05D003288 3.0e-08 62.0 58 50.0
AUR62006890 Chenopodium quinoa HOM05D000162 ORTHO05D003288 8.8e-08 60.5 69 43.5
FAN21G0792 Fragaria x ananassa HOM05D000027 ORTHO05D001163 1.5e-07 59.7 58 46.6
FAN21G0960 Fragaria x ananassa HOM05D000027 ORTHO05D001163 1.5e-07 59.7 58 46.6
Lsat_1_v5_gn_0_17660 Lactuca sativa HOM05D000162 ORTHO05D000090 1.5e-07 59.7 71 39.4
RcHm_v2.0_Chr5g0069571 Rosa chinensis HOM05D009709 ORTHO05D010307 1.5e-07 59.7 71 46.5
EL10Ac4g09866 Beta vulgaris HOM05D000162 ORTHO05D000090 2.0e-07 59.3 67 43.3
Nitab4.5_0000428g0460 Nicotiana tabacum HOM05D011051 ORTHO05D003288 2.0e-07 59.3 59 49.2
Rhsim02G0051600 Rhododendron simsii HOM05D026694 ORTHO05D003288 2.0e-07 59.3 71 40.8
Migut.G01184 Erythranthe guttata HOM05D000162 ORTHO05D000090 2.6e-07 58.9 67 43.3
FvH4_3g31580 Fragaria vesca HOM05D009709 ORTHO05D003288 2.6e-07 58.9 54 51.9
HanXRQChr03g0090811 Helianthus annuus HOM05D000162 ORTHO05D003288 2.6e-07 58.9 84 36.9
arahy.Tifrunner.gnm1.ann1.KQ42YR Arachis hypogaea HOM05D018308 ORTHO05D003288 3.3e-07 58.5 68 44.1
MBI11_g34855_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 3.3e-07 58.5 71 43.7
Nitab4.5_0000956g0130 Nicotiana tabacum HOM05D011051 ORTHO05D003288 4.4e-07 58.2 87 36.8
AUR62005166 Chenopodium quinoa HOM05D001413 ORTHO05D003288 5.7e-07 57.8 68 42.6
AUR62005214 Chenopodium quinoa HOM05D000162 ORTHO05D003288 5.7e-07 57.8 68 42.6
HanXRQChr13g0415191 Helianthus annuus HOM05D022346 ORTHO05D003288 5.7e-07 57.8 89 37.1
AUR62000678 Chenopodium quinoa HOM05D000162 ORTHO05D003288 7.5e-07 57.4 68 42.6
AUR62000690 Chenopodium quinoa HOM05D000162 ORTHO05D003288 7.5e-07 57.4 68 42.6
FAN25G2751 Fragaria x ananassa HOM05D009709 ORTHO05D003288 7.5e-07 57.4 55 50.9
Migut.G01194 Erythranthe guttata HOM05D000162 ORTHO05D000090 9.7e-07 57.0 59 45.8
Solyc06g007270.1 Solanum lycopersicum HOM05D011051 ORTHO05D003288 9.7e-07 57.0 55 45.5
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.3e-06 56.6 68 39.7
RcHm_v2.0_Chr5g0075791 Rosa chinensis HOM05D000162 ORTHO05D003288 1.3e-06 56.6 66 45.5
SalBow6G2727 Salvia bowleyana HOM05D019789 ORTHO05D017908 1.3e-06 56.6 61 52.5
BcaC04g19405 Brassica carinata HOM05D000162 ORTHO05D003288 1.7e-06 56.2 68 45.6
C09p56060 Brassica napus HOM05D000162 ORTHO05D003288 1.7e-06 56.2 68 45.6
AUR62000710 Chenopodium quinoa HOM05D000162 ORTHO05D003288 1.7e-06 56.2 68 39.7
HanXRQChr07g0203991 Helianthus annuus HOM05D000162 ORTHO05D000090 1.7e-06 56.2 64 43.8
vmacro13801 Vaccinium macrocarpon HOM05D026694 ORTHO05D003288 1.7e-06 56.2 71 40.8
AUR62000649 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.2e-06 55.8 68 39.7
AUR62000650 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.2e-06 55.8 68 39.7
AUR62000666 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.2e-06 55.8 68 39.7
FAN16G3455 Fragaria x ananassa HOM05D009709 ORTHO05D003288 2.2e-06 55.8 65 46.2
BolC9t58473H Brassica oleracea HOM05D000162 ORTHO05D003288 2.8e-06 55.5 68 45.6
AUR62017647 Chenopodium quinoa HOM05D000162 ORTHO05D003288 2.8e-06 55.5 68 41.2
AUR62005303 Chenopodium quinoa HOM05D000162 ORTHO05D000090 3.7e-06 55.1 68 39.7
SalBow3G1670 Salvia bowleyana HOM05D022251 ORTHO05D003288 3.7e-06 55.1 59 42.4
AUR62000665 Chenopodium quinoa HOM05D000162 ORTHO05D003288 4.8e-06 54.7 68 39.7
ECA238G1168 Erigeron canadensis HOM05D000162 ORTHO05D000090 4.8e-06 54.7 58 48.3
PGSC0003DMG400020554 Solanum tuberosum HOM05D011051 ORTHO05D003288 4.8e-06 54.7 55 43.6
Gorai.009G378000 Gossypium raimondii HOM05D009709 ORTHO05D003288 6.3e-06 54.3 67 41.8
AUR62005276 Chenopodium quinoa HOM05D000162 ORTHO05D000090 8.2e-06 53.9 68 39.7
Manes.09G016680 Manihot esculenta HOM05D000162 ORTHO05D003288 8.2e-06 53.9 59 42.4
Potri.005G046050 Populus trichocarpa HOM05D009709 ORTHO05D003288 8.2e-06 53.9 71 38.0


User provided reference genes

Program Settings