Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 2.7e-166 588.6 294 100.0
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 9.7e-140 500.4 290 85.5
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 8.5e-136 487.3 295 84.4
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 5.5e-135 484.6 294 83.3
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 2.3e-125 452.6 266 83.8
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 5.9e-121 438.0 293 75.4
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 5.9e-121 438.0 293 75.1
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 9.4e-119 430.6 291 74.6
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 3.6e-118 428.7 311 73.3
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 1.4e-114 416.8 302 70.2
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 1.4e-114 416.8 291 74.6
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 3.1e-114 415.6 297 72.4
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.6e-113 413.3 329 66.6
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 3.5e-113 412.1 306 70.3
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 3.5e-113 412.1 304 69.7
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 7.7e-113 411.0 286 73.4
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 1.3e-112 410.2 287 71.1
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 1.7e-112 409.8 299 70.9
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.2e-112 409.5 287 71.1
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 2.9e-112 409.1 291 72.5
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 1.1e-111 407.1 292 72.9
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 3.2e-111 405.6 290 71.0
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 3.2e-111 405.6 291 72.9
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 1.2e-110 403.7 303 68.6
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 2.7e-110 402.5 291 72.2
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 4.7e-110 401.7 292 72.6
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 1.0e-109 400.6 266 77.8
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 2.3e-109 399.4 289 69.2
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 2.3e-109 399.4 316 68.4
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 1.2e-108 397.1 294 69.7
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 5.7e-108 394.8 280 69.6
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 9.8e-108 394.0 324 63.0
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 1.7e-107 393.3 288 72.6
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 2.2e-107 392.9 274 73.7
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 6.3e-107 391.3 300 69.3
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 7.0e-106 387.9 288 68.1
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.6e-105 386.7 334 61.1
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.0e-104 384.0 306 67.0
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 2.3e-104 382.9 289 67.1
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 1.5e-103 380.2 279 69.5
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 9.5e-103 377.5 291 66.0
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 1.2e-102 377.1 294 65.0
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 1.2e-102 377.1 293 66.9
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 1.6e-102 376.7 294 65.3
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 6.1e-102 374.8 295 64.1
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 6.1e-102 374.8 298 66.1
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.0e-101 372.5 294 65.3
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 5.2e-101 371.7 303 64.0
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 6.8e-101 371.3 293 66.6
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 8.9e-101 370.9 271 72.3
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 8.9e-101 370.9 271 72.3
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 8.9e-101 370.9 271 72.3
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 5.7e-100 368.2 295 65.4
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 2.2e-99 366.3 294 64.6
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 2.9e-99 365.9 304 62.8
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 3.7e-99 365.5 298 66.1
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 1.1e-98 364.0 312 60.9
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 2.4e-98 362.8 293 63.1
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 2.4e-98 362.8 279 64.5
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 3.2e-98 362.5 294 63.9
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 3.2e-98 362.5 297 63.3
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 4.1e-98 362.1 293 65.5
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 5.4e-98 361.7 289 64.0
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 9.2e-98 360.9 292 64.7
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.2e-97 360.5 304 61.8
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 2.0e-97 359.8 300 64.7
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 2.0e-97 359.8 300 64.7
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 2.0e-97 359.8 300 64.7
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 2.7e-97 359.4 300 64.7
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 5.9e-97 358.2 295 64.1
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 5.9e-97 358.2 299 64.2
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 7.8e-97 357.8 300 64.3
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 1.0e-96 357.5 332 59.3
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 2.3e-96 356.3 294 62.2
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 2.3e-96 356.3 298 63.1
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 3.9e-96 355.5 272 69.5
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 8.6e-96 354.4 293 63.1
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 7.3e-95 351.3 294 61.6
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.2e-94 350.5 279 63.4
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 3.6e-94 349.0 286 61.9
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 1.8e-93 346.7 260 65.8
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 5.2e-93 345.1 348 55.2
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 1.5e-92 343.6 277 61.7
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.5e-92 343.6 276 62.3
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 2.0e-92 343.2 289 64.7
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 4.4e-92 342.0 295 61.4
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 2.2e-91 339.7 232 74.6
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 2.2e-91 339.7 306 61.1
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 2.9e-91 339.3 229 76.0
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 4.9e-91 338.6 276 64.1
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 2.4e-90 336.3 260 66.9
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 2.4e-90 336.3 276 64.5
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 6.0e-89 331.6 214 74.3
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 6.6e-88 328.2 278 60.8
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 1.5e-84 317.0 278 60.4
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 2.6e-84 316.2 296 59.1
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 4.9e-83 312.0 305 55.7
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 3.0e-80 302.8 269 57.6
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.5e-79 300.4 264 60.2
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 1.9e-79 300.1 282 57.1
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 9.9e-76 287.7 227 65.2
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 1.3e-75 287.3 452 42.0
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 4.9e-75 285.4 288 56.6
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 1.9e-74 283.5 230 60.4
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 4.6e-73 278.9 246 62.2
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 5.6e-71 271.9 247 60.3
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 2.2e-67 260.0 245 52.2
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 1.3e-62 244.2 212 57.5
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 1.8e-61 240.4 193 64.2
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 9.0e-61 238.0 166 71.7
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 5.8e-60 235.3 175 69.7
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 7.6e-60 235.0 229 51.1
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.9e-55 220.3 233 49.8
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 7.4e-55 218.4 230 49.6
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 2.6e-52 209.9 167 61.7
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.1e-46 190.3 154 62.3
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 2.4e-45 186.8 117 75.2
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 3.2e-42 176.4 215 50.2
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 2.1e-41 173.7 126 69.0
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 1.9e-39 167.2 150 53.3
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 1.0e-35 154.8 89 79.8
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 5.0e-35 152.5 120 67.5
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 3.6e-33 146.4 234 38.9
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 7.9e-33 145.2 120 65.8
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 2.4e-29 133.7 115 58.3
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 6.9e-29 132.1 82 75.6
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 1.1e-26 124.8 75 74.7
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 5.7e-23 112.5 137 45.3
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 9.7e-23 111.7 67 79.1
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 1.3e-22 111.3 89 64.0
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.3e-22 111.3 89 64.0
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 1.7e-22 110.9 77 71.4
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 6.3e-22 109.0 74 67.6
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.3e-19 101.3 80 67.5
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 7.2e-18 95.5 65 70.8
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 9.7e-15 85.1 74 55.4
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 8.2e-14 82.0 44 77.3
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 1.4e-13 81.3 84 53.6
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 9.1e-13 78.6 73 52.1
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 5.9e-12 75.9 42 83.3
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 1.5e-10 71.2 72 54.2
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 1.6e-09 67.8 46 69.6
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.7e-09 67.0 189 30.7
Phvul.005G077000 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 4.0e-08 63.2 36 72.2
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 7.5e-07 58.9 203 26.1
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 9.7e-07 58.5 229 25.3
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 2.8e-06 57.0 186 27.4


User provided reference genes

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