Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026020 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 1.6e-49 199.1 102 100.0
CSS0041085 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.1e-49 198.7 101 100.0
CSS0039652 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.0e-47 192.2 102 97.1
CSS0003750 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 9.5e-26 120.2 104 69.2
Dinv37502 Davidia involucrata HOM05D000086 ORTHO05D002912 2.8e-25 118.6 100 66.0
Actinidia27309 Actinidia chinensis HOM05D000086 ORTHO05D002912 8.0e-25 117.1 99 70.7
Ciclev10024464m.g Citrus clementina HOM05D000086 ORTHO05D002912 1.0e-24 116.7 103 64.1
Cpa.g.sc15.6 Carica papaya HOM05D000086 ORTHO05D002912 3.0e-24 115.2 102 65.7
Thecc.08G165900 Theobroma cacao HOM05D000086 ORTHO05D002912 8.9e-24 113.6 104 62.5
Lj2A163T68 Lonicera japonica HOM05D000086 ORTHO05D002912 1.5e-23 112.8 106 63.2
Potri.001G088400 Populus trichocarpa HOM05D000086 ORTHO05D002912 2.0e-23 112.5 103 64.1
Dinv38814 Davidia involucrata HOM05D000086 ORTHO05D002912 2.6e-23 112.1 101 65.3
Glyma.05G218700 Glycine max HOM05D000086 ORTHO05D002912 5.7e-23 110.9 105 63.8
Sabra01G0064700 Salix brachista HOM05D000086 ORTHO05D002912 5.7e-23 110.9 103 63.1
PGR031G3866 Punica granatum HOM05D000086 ORTHO05D002912 7.5e-23 110.5 104 63.5
Haze_09101 Corylus avellana HOM05D000086 ORTHO05D002912 2.2e-22 109.0 102 63.7
Glyma.08G024800 Glycine max HOM05D000086 ORTHO05D002912 2.2e-22 109.0 106 63.2
MBI06_g10868_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 4.9e-22 107.8 102 60.8
Nn1g00280 Nelumbo nucifera HOM05D000086 ORTHO05D002912 6.3e-22 107.5 106 63.2
Lsat_1_v5_gn_6_71661 Lactuca sativa HOM05D000086 ORTHO05D002912 1.1e-21 106.7 102 59.8
CSS0007727 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 1.4e-21 106.3 104 63.5
QL02p029662 Quercus lobata HOM05D000086 ORTHO05D002912 1.4e-21 106.3 102 64.7
Nitab4.5_0002367g0040 Nicotiana tabacum HOM05D000086 ORTHO05D002912 3.1e-21 105.1 102 59.8
Gohir.D08G249800 Gossypium hirsutum HOM05D000086 ORTHO05D002912 7.0e-21 104.0 105 56.2
Gorai.004G266400 Gossypium raimondii HOM05D000086 ORTHO05D002912 7.0e-21 104.0 106 59.4
Manes.02G007100 Manihot esculenta HOM05D000086 ORTHO05D002912 7.0e-21 104.0 103 60.2
Solyc08g082680.3 Solanum lycopersicum HOM05D000086 ORTHO05D002912 7.0e-21 104.0 103 61.2
Sopen08g030900 Solanum pennellii HOM05D000086 ORTHO05D002912 7.0e-21 104.0 103 61.2
Actinidia02522 Actinidia chinensis HOM05D000086 ORTHO05D002912 9.2e-21 103.6 103 62.1
DCAR_030429 Daucus carota HOM05D000086 ORTHO05D002912 1.2e-20 103.2 102 60.8
Gohir.A08G229500 Gossypium hirsutum HOM05D000086 ORTHO05D002912 1.6e-20 102.8 105 56.2
VMungo0251G0743 Vigna mungo HOM05D000086 ORTHO05D002912 1.6e-20 102.8 105 60.0
PGSC0003DMG400012137 Solanum tuberosum HOM05D000086 ORTHO05D002912 2.0e-20 102.4 103 61.2
Manes.01G052600 Manihot esculenta HOM05D000086 ORTHO05D002912 2.7e-20 102.1 102 57.8
Lj4g0025211 Lotus japonicus HOM05D000086 ORTHO05D002912 4.5e-20 101.3 109 56.9
MD14G1132500 Malus domestica HOM05D000086 ORTHO05D002912 5.9e-20 100.9 107 57.0
CANSAT21G1707 Cannabis sativa HOM05D000086 ORTHO05D002912 7.8e-20 100.5 107 57.0
CiPaw.12G080900 Carya illinoinensis HOM05D000086 ORTHO05D002912 7.8e-20 100.5 103 60.2
Lalb_Chr05g0223981 Lupinus albus HOM05D000086 ORTHO05D002912 1.0e-19 100.1 107 59.8
Lalb_Chr16g0390721 Lupinus albus HOM05D000086 ORTHO05D002912 1.0e-19 100.1 108 57.4
Phvul.002G300500 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 1.0e-19 100.1 105 58.1
arahy.Tifrunner.gnm1.ann1.1IN0XH Arachis hypogaea HOM05D000086 ORTHO05D002912 1.7e-19 99.4 102 59.8
Eucgr.D01770 Eucalyptus grandis HOM05D000086 ORTHO05D002912 1.7e-19 99.4 103 58.3
MD06G1111300 Malus domestica HOM05D000086 ORTHO05D002912 1.7e-19 99.4 109 57.8
Hma1.2p1_0440F.1_g153540 Hydrangea macrophylla HOM05D000086 ORTHO05D002912 2.3e-19 99.0 77 74.0
Prupe.5G124100 Prunus persica HOM05D000086 ORTHO05D002912 2.3e-19 99.0 105 58.1
arahy.Tifrunner.gnm1.ann1.60J8GE Arachis hypogaea HOM05D000086 ORTHO05D002912 2.9e-19 98.6 102 59.8
BcaNung04249 Brassica carinata HOM05D000086 ORTHO05D002912 2.9e-19 98.6 101 61.4
C07p53290 Brassica napus HOM05D000086 ORTHO05D002912 2.9e-19 98.6 101 61.4
BolC7t45824H Brassica oleracea HOM05D000086 ORTHO05D002912 2.9e-19 98.6 101 61.4
CARHR231420 Cardamine hirsuta HOM05D000086 ORTHO05D002912 3.8e-19 98.2 101 59.4
Glyma.13G002800 Glycine max HOM05D000086 ORTHO05D002912 5.0e-19 97.8 108 60.2
BraA03t14556Z Brassica rapa HOM05D000086 ORTHO05D002912 6.6e-19 97.4 101 61.4
AL7G29290 Arabidopsis lyrata HOM05D000086 ORTHO05D002912 8.6e-19 97.1 101 59.4
AT4G24015 Arabidopsis thaliana HOM05D000086 ORTHO05D002912 8.6e-19 97.1 101 59.4
ECA233G6093 Erigeron canadensis HOM05D000086 ORTHO05D002912 1.1e-18 96.7 103 55.3
Sp7g21970 Schrenkiella parvula HOM05D000086 ORTHO05D002912 1.1e-18 96.7 97 59.8
Potri.003G142600 Populus trichocarpa HOM05D000086 ORTHO05D002912 1.5e-18 96.3 100 56.0
COL.COLO4_25065 Corchorus olitorius HOM05D000086 ORTHO05D002912 1.9e-18 95.9 96 58.3
Nn3g18960 Nelumbo nucifera HOM05D000086 ORTHO05D002912 1.9e-18 95.9 93 62.4
GSVIVG01019592001 Vitis vinifera HOM05D000086 ORTHO05D002912 1.9e-18 95.9 102 59.8
Lalb_Chr09g0332221 Lupinus albus HOM05D000086 ORTHO05D002912 2.5e-18 95.5 109 57.8
MBI07_g24778_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 2.5e-18 95.5 102 54.9
Peaxi162Scf00074g00527 Petunia axillaris HOM05D000086 ORTHO05D002912 2.5e-18 95.5 101 57.4
Aa31LG6G7220 Aethionema arabicum HOM05D000086 ORTHO05D002912 3.3e-18 95.1 97 58.8
BcaNung01107 Brassica carinata HOM05D000086 ORTHO05D002912 3.3e-18 95.1 97 59.8
A01p15280 Brassica napus HOM05D000086 ORTHO05D002912 3.3e-18 95.1 96 57.3
Medtr3g081030 Medicago truncatula HOM05D000086 ORTHO05D002912 3.3e-18 95.1 99 55.6
Thhalv10026391m.g Eutrema salsugineum HOM05D000086 ORTHO05D002912 4.3e-18 94.7 101 58.4
FvH4_5g11670 Fragaria vesca HOM05D000086 ORTHO05D002912 5.6e-18 94.4 96 60.4
FAN18G1358 Fragaria x ananassa HOM05D000086 ORTHO05D002912 5.6e-18 94.4 96 60.4
FAN18G4267 Fragaria x ananassa HOM05D000086 ORTHO05D002912 5.6e-18 94.4 96 60.4
EL10Ac5g12948 Beta vulgaris HOM05D000086 ORTHO05D002912 7.3e-18 94.0 97 57.7
Lj6g0016186 Lotus japonicus HOM05D000086 ORTHO05D002912 9.5e-18 93.6 99 57.6
Duzib116G0331 Durio zibethinus HOM05D000086 ORTHO05D002912 1.2e-17 93.2 108 56.5
FAN13G2692 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.6e-17 92.8 96 59.4
PSO135G0157 Papaver somniferum HOM05D000086 ORTHO05D002912 2.8e-17 92.0 113 53.1
FAN08G2033 Fragaria x ananassa HOM05D000086 ORTHO05D002912 4.7e-17 91.3 96 59.4
Oeu030887.1 Olea europaea HOM05D000086 ORTHO05D002912 4.7e-17 91.3 91 60.4
PSO384G4716 Papaver somniferum HOM05D000086 ORTHO05D002912 8.0e-17 90.5 113 52.2
MSTRG.10181 Avicennia marina HOM05D002688 ORTHO05D002911 1.0e-16 90.1 101 56.4
Lj6A699T66 Lonicera japonica HOM05D000086 ORTHO05D002912 1.0e-16 90.1 107 53.3
AUR62019872 Chenopodium quinoa HOM05D000086 ORTHO05D002912 1.4e-16 89.7 96 53.1
A03p54910 Brassica napus HOM05D000086 ORTHO05D002912 1.8e-16 89.4 101 58.4
Oeu022695.1 Olea europaea HOM05D000086 ORTHO05D002912 1.8e-16 89.4 99 60.6
HanXRQChr10g0316891 Helianthus annuus HOM05D000086 ORTHO05D002912 3.0e-16 88.6 108 54.6
Psat5g108400 Pisum sativum HOM05D000086 ORTHO05D002912 8.9e-16 87.0 97 55.7
Sed0016681 Sechium edule HOM05D000086 ORTHO05D002912 2.0e-15 85.9 103 54.4
TPR.G33602 Trifolium pratense HOM05D000086 ORTHO05D002912 4.4e-15 84.7 92 56.5
Glyma.20G066300 Glycine max HOM05D000086 ORTHO05D002912 9.8e-15 83.6 108 55.6
SGA_v2.0_scaffold64G22042 Striga asiatica HOM05D000086 ORTHO05D002912 9.8e-15 83.6 98 57.1
CSS0008003 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.2e-14 82.4 104 48.1
RcHm_v2.0_Chr7g0186121 Rosa chinensis HOM05D000086 ORTHO05D002912 2.2e-14 82.4 96 56.2
HanXRQChr07g0190771 Helianthus annuus HOM05D000086 ORTHO05D002912 2.9e-14 82.0 108 50.0
VMungo0540G0071 Vigna mungo HOM05D000086 ORTHO05D002912 2.9e-14 82.0 113 53.1
FAN04G1292 Fragaria x ananassa HOM05D000086 ORTHO05D002912 3.7e-14 81.6 96 55.2
BcaC09g50923 Brassica carinata HOM05D000086 ORTHO05D002912 4.9e-14 81.3 97 53.6
C01p19210 Brassica napus HOM05D000086 ORTHO05D002912 4.9e-14 81.3 97 53.6
BolC1t01848H Brassica oleracea HOM05D000086 ORTHO05D002912 4.9e-14 81.3 97 53.6
CSS0024757 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 4.9e-14 81.3 104 47.1
BraA01t01471Z Brassica rapa HOM05D000086 ORTHO05D002912 1.4e-13 79.7 97 52.6
Phvul.006G000700 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 4.1e-13 78.2 98 56.1
Atru.chr13.2582 Acer truncatum HOM05D000086 ORTHO05D002912 6.0e-12 74.3 102 50.0
Aqoxy7G00064 Aquilegia oxysepala HOM05D000086 ORTHO05D002912 1.3e-11 73.2 106 48.1
Ciclev10021842m.g Citrus clementina HOM05D000086 ORTHO05D002912 2.3e-11 72.4 95 45.3
Lsat_1_v5_gn_6_9501 Lactuca sativa HOM05D000086 ORTHO05D002912 2.3e-11 72.4 111 46.8
Solyc06g064440.3 Solanum lycopersicum HOM05D000086 ORTHO05D002912 3.9e-11 71.6 84 52.4
Sabra13G0081100 Salix brachista HOM05D000086 ORTHO05D002912 5.0e-11 71.2 83 50.6
PGSC0003DMG400033135 Solanum tuberosum HOM05D000086 ORTHO05D002912 6.6e-11 70.9 110 44.5
Cc08_g16350 Coffea canephora HOM05D000086 ORTHO05D002912 8.6e-11 70.5 99 46.5
Lj9A695T55 Lonicera japonica HOM05D000086 ORTHO05D002912 8.6e-11 70.5 84 48.8
Cpa.g.sc142.5 Carica papaya HOM05D000086 ORTHO05D002912 1.1e-10 70.1 87 48.3
Potri.013G095100 Populus trichocarpa HOM05D000086 ORTHO05D002912 1.1e-10 70.1 82 50.0
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.5e-10 69.7 98 45.9
Gohir.A03G080900 Gossypium hirsutum HOM05D000086 ORTHO05D002912 2.5e-10 68.9 94 44.7
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 3.3e-10 68.6 82 48.8
Sed0026122 Sechium edule HOM05D000086 ORTHO05D002912 4.3e-10 68.2 106 46.2
TWI12G1094 Tripterygium wilfordii HOM05D000086 ORTHO05D002912 5.6e-10 67.8 105 41.0
Aqoxy5G01852 Aquilegia oxysepala HOM05D000086 ORTHO05D002912 7.3e-10 67.4 82 48.8
Duzib116G0004 Durio zibethinus HOM05D000086 ORTHO05D002912 7.3e-10 67.4 82 48.8
TAR628G0190 Trochodendron aralioides HOM05D000086 ORTHO05D002912 7.3e-10 67.4 82 48.8
AT1G33480 Arabidopsis thaliana HOM05D000086 ORTHO05D002912 9.5e-10 67.0 100 43.0
Carub.0001s3167 Capsella rubella HOM05D000086 ORTHO05D002912 9.5e-10 67.0 103 43.7
Atru.chr9.1938 Acer truncatum HOM05D000086 ORTHO05D002912 1.2e-09 66.6 103 43.7
Psat7g229760 Pisum sativum HOM05D000086 ORTHO05D002912 1.2e-09 66.6 85 45.9
Peaxi162Scf00818g00319 Petunia axillaris HOM05D000086 ORTHO05D002912 1.6e-09 66.2 107 43.9
Hma1.2p1_0016F.1_g010970 Hydrangea macrophylla HOM05D000086 ORTHO05D002912 2.1e-09 65.9 101 43.6
Lalb_Chr19g0131911 Lupinus albus HOM05D000086 ORTHO05D002912 2.1e-09 65.9 82 46.3
Manes.18G109000 Manihot esculenta HOM05D000086 ORTHO05D002912 2.1e-09 65.9 82 45.1
CiPaw.11G117600 Carya illinoinensis HOM05D000086 ORTHO05D002912 2.8e-09 65.5 101 44.6
THA.LOC104813084 Tarenaya hassleriana HOM05D000086 ORTHO05D002912 2.8e-09 65.5 100 44.0
GSVIVG01037142001 Vitis vinifera HOM05D000086 ORTHO05D002912 2.8e-09 65.5 102 43.1
MSTRG.1610 Avicennia marina HOM05D000086 ORTHO05D002912 3.6e-09 65.1 87 47.1
Medtr4g030070 Medicago truncatula HOM05D000086 ORTHO05D002912 4.7e-09 64.7 85 44.7
TPR.G4399 Trifolium pratense HOM05D000086 ORTHO05D002912 4.7e-09 64.7 84 46.4
ClCG01G001780 Citrullus lanatus HOM05D000086 ORTHO05D002912 8.0e-09 63.9 107 44.9
Nitab4.5_0001489g0050 Nicotiana tabacum HOM05D000086 ORTHO05D002912 8.0e-09 63.9 85 47.1
MBI06_g32151_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 1.1e-08 63.5 82 46.3
Nn5g27230 Nelumbo nucifera HOM05D000086 ORTHO05D002912 1.1e-08 63.5 97 42.3
Nitab4.5_0007335g0030 Nicotiana tabacum HOM05D000086 ORTHO05D002912 2.3e-08 62.4 85 48.2
Aa31LG6G7950 Aethionema arabicum HOM05D000086 ORTHO05D002912 3.1e-08 62.0 82 42.7
Thhalv10009296m.g Eutrema salsugineum HOM05D000086 ORTHO05D002912 3.1e-08 62.0 82 45.1
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 4.0e-08 61.6 82 45.1
CARHR032920 Cardamine hirsuta HOM05D000086 ORTHO05D002912 5.2e-08 61.2 82 43.9
Oeu020628.1 Olea europaea HOM05D000086 ORTHO05D002912 6.8e-08 60.8 87 46.0
Prupe.8G002900 Prunus persica HOM05D000086 ORTHO05D002912 6.8e-08 60.8 82 42.7
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 8.9e-08 60.5 82 45.1
BcaC08g43850 Brassica carinata HOM05D000086 ORTHO05D002912 8.9e-08 60.5 84 44.0
C06p12330 Brassica napus HOM05D000086 ORTHO05D002912 8.9e-08 60.5 84 44.0
BolC6t36384H Brassica oleracea HOM05D000086 ORTHO05D002912 8.9e-08 60.5 84 44.0
MELO3C005760.2 Cucumis melo HOM05D000086 ORTHO05D002912 1.2e-07 60.1 40 80.0
CsaV3_5G001920 Cucumis sativus L. HOM05D000086 ORTHO05D002912 1.2e-07 60.1 40 80.0
Zm00001eb243920 Zea mays HOM05D000086 ORTHO05D002912 1.2e-07 60.1 97 36.1
A09p32790 Brassica napus HOM05D000086 ORTHO05D002912 1.5e-07 59.7 82 43.9
Actinidia29365 Actinidia chinensis HOM05D000086 ORTHO05D002912 2.6e-07 58.9 82 46.3
Nitab4.5_0000079g0170 Nicotiana tabacum HOM05D000086 ORTHO05D002912 2.6e-07 58.9 83 44.6
Os02g0557300 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D002912 3.4e-07 58.5 84 39.3
THA.LOC104815780 Tarenaya hassleriana HOM05D000086 ORTHO05D002912 3.4e-07 58.5 109 36.7
AL6G43980 Arabidopsis lyrata HOM05D000086 ORTHO05D002912 4.4e-07 58.2 100 38.0
BraA09t38814Z Brassica rapa HOM05D000086 ORTHO05D002912 4.4e-07 58.2 82 42.7
VMungo1127G1869 Vigna mungo HOM05D000086 ORTHO05D002912 4.4e-07 58.2 83 42.2
arahy.Tifrunner.gnm1.ann1.WURL8V Arachis hypogaea HOM05D000086 ORTHO05D002912 5.8e-07 57.8 84 42.9
Cc10_g16100 Coffea canephora HOM05D000086 ORTHO05D002912 5.8e-07 57.8 86 41.9
DCAR_002543 Daucus carota HOM05D000086 ORTHO05D002912 5.8e-07 57.8 90 44.4
QL09p001255 Quercus lobata HOM05D000086 ORTHO05D002912 5.8e-07 57.8 80 43.8
arahy.Tifrunner.gnm1.ann1.UV0H6R Arachis hypogaea HOM05D000086 ORTHO05D002912 7.5e-07 57.4 84 42.9
Peaxi162Scf00078g01140 Petunia axillaris HOM05D000086 ORTHO05D002912 7.5e-07 57.4 84 42.9
Thhalv10028921m.g Eutrema salsugineum HOM05D000086 ORTHO05D002912 9.8e-07 57.0 98 39.8
Sp6g07260 Schrenkiella parvula HOM05D000086 ORTHO05D002912 9.8e-07 57.0 86 43.0
Eucgr.F04086 Eucalyptus grandis HOM05D000086 ORTHO05D002912 2.2e-06 55.8 83 42.2
Glyma.09G001600 Glycine max HOM05D000086 ORTHO05D002912 2.2e-06 55.8 84 44.0
MELO3C022123.2 Cucumis melo HOM05D000086 ORTHO05D002912 2.9e-06 55.5 84 44.0
SMO358G0642 Selaginella moellendorffii HOM05D000086 ORTHO05D002912 3.7e-06 55.1 74 43.2
GSVIVG01019585001 Vitis vinifera HOM05D000086 ORTHO05D002912 3.7e-06 55.1 69 55.1
AT4G10150 Arabidopsis thaliana HOM05D000086 ORTHO05D002912 4.9e-06 54.7 100 35.0
EL10Ac1g01285 Beta vulgaris HOM05D000086 ORTHO05D002912 4.9e-06 54.7 90 38.9
Carub.0006s2872 Capsella rubella HOM05D000086 ORTHO05D002912 8.3e-06 53.9 88 36.4
CARHR261240 Cardamine hirsuta HOM05D000086 ORTHO05D002912 8.3e-06 53.9 87 41.4
AUR62013394 Chenopodium quinoa HOM05D000086 ORTHO05D002912 8.3e-06 53.9 87 40.2
Lj3g0023405 Lotus japonicus HOM05D000086 ORTHO05D002912 8.3e-06 53.9 89 37.1
Manes.02G200348 Manihot esculenta HOM05D000086 ORTHO05D002912 8.3e-06 53.9 101 36.6


User provided reference genes

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