Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026006 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 7.0e-56 220.3 107 100.0
CSS0000553 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 8.9e-51 203.4 120 86.7
CSS0012389 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 8.9e-51 203.4 120 86.7
CSS0025758 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 8.9e-51 203.4 120 86.7
CSS0025980 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 8.9e-51 203.4 120 86.7
CSS0033966 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 8.9e-51 203.4 120 86.7
CSS0040247 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 8.9e-51 203.4 120 86.7
CSS0031452 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 2.6e-50 201.8 120 85.8
CSS0032073 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D016149 2.6e-50 201.8 120 85.8
CSS0021249 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 6.9e-35 150.6 98 75.5
Eucgr.I02176 Eucalyptus grandis HOM05D000141 ORTHO05D004489 4.2e-32 141.4 73 91.8
FvH4_1g09831 Fragaria vesca HOM05D000141 ORTHO05D004489 7.1e-32 140.6 73 87.7
FAN19G2837 Fragaria x ananassa HOM05D000141 ORTHO05D004489 7.1e-32 140.6 73 87.7
FAN23G0353 Fragaria x ananassa HOM05D000141 ORTHO05D004489 7.1e-32 140.6 73 87.7
FAN23G1938 Fragaria x ananassa HOM05D000141 ORTHO05D004489 7.1e-32 140.6 73 87.7
FAN26G1899 Fragaria x ananassa HOM05D000141 ORTHO05D004489 7.1e-32 140.6 73 87.7
Prupe.7G188900 Prunus persica HOM05D000141 ORTHO05D004489 7.1e-32 140.6 73 89.0
RcHm_v2.0_Chr2g0096601 Rosa chinensis HOM05D000141 ORTHO05D004489 7.1e-32 140.6 73 87.7
TAR381G1317 Trochodendron aralioides HOM05D000141 ORTHO05D004489 7.1e-32 140.6 73 89.0
vmacro20418 Vaccinium macrocarpon HOM05D000141 ORTHO05D004489 7.1e-32 140.6 73 89.0
QL06p053568 Quercus lobata HOM05D000141 ORTHO05D004489 9.3e-32 140.2 73 89.0
Rhsim10G0188900 Rhododendron simsii HOM05D000141 ORTHO05D004489 9.3e-32 140.2 73 87.7
CSS0002075 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004489 1.2e-31 139.8 73 89.0
Manes.01G158800 Manihot esculenta HOM05D000141 ORTHO05D004489 1.2e-31 139.8 73 89.0
PGSC0003DMG400009428 Solanum tuberosum HOM05D000141 ORTHO05D004489 1.2e-31 139.8 98 68.4
Peaxi162Scf00981g00112 Petunia axillaris HOM05D000141 ORTHO05D004489 1.6e-31 139.4 98 69.4
Solyc02g068340.3 Solanum lycopersicum HOM05D000141 ORTHO05D004489 1.6e-31 139.4 98 68.4
Sopen02g017470 Solanum pennellii HOM05D000141 ORTHO05D004489 1.6e-31 139.4 98 68.4
CiPaw.08G183100 Carya illinoinensis HOM05D000141 ORTHO05D004489 2.1e-31 139.0 73 90.4
Phvul.003G279200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 2.1e-31 139.0 98 69.4
VMungo0251G0509 Vigna mungo HOM05D000141 ORTHO05D004489 2.1e-31 139.0 98 69.4
Cpa.g.sc17.14 Carica papaya HOM05D000141 ORTHO05D004489 2.7e-31 138.7 73 89.0
Thecc.01G000500 Theobroma cacao HOM05D000141 ORTHO05D004489 2.7e-31 138.7 98 69.4
Aqoxy6G03061 Aquilegia oxysepala HOM05D000141 ORTHO05D004489 3.5e-31 138.3 72 88.9
CAN.G883.8 Capsicum annuum HOM05D000141 ORTHO05D004489 3.5e-31 138.3 98 67.3
PGR119G2404 Punica granatum HOM05D000141 ORTHO05D004489 3.5e-31 138.3 73 87.7
Atru.chr3.3 Acer truncatum HOM05D000141 ORTHO05D004489 4.6e-31 137.9 73 89.0
TWI31G1431 Tripterygium wilfordii HOM05D000141 ORTHO05D004489 4.6e-31 137.9 73 86.3
Ciclev10024719m.g Citrus clementina HOM05D000141 ORTHO05D004489 6.0e-31 137.5 98 70.4
Cc07_g12380 Coffea canephora HOM05D000141 ORTHO05D004489 6.0e-31 137.5 73 86.3
FAN28G1293 Fragaria x ananassa HOM05D000141 ORTHO05D004489 6.0e-31 137.5 73 84.9
MD02G1106300 Malus domestica HOM05D000141 ORTHO05D004489 6.0e-31 137.5 73 87.7
Hma1.2p1_0085F.1_g044180 Hydrangea macrophylla HOM05D000141 ORTHO05D004489 7.8e-31 137.1 73 86.3
Migut.K01161 Erythranthe guttata HOM05D000141 ORTHO05D004489 1.0e-30 136.7 73 87.7
MBI04_g23902_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 1.0e-30 136.7 73 86.3
Glyma.09G194900 Glycine max HOM05D000141 ORTHO05D004489 1.3e-30 136.3 73 84.9
Glyma.16G111200 Glycine max HOM05D000141 ORTHO05D004489 1.3e-30 136.3 73 86.3
Lj4C246T10 Lonicera japonica HOM05D000141 ORTHO05D004489 1.3e-30 136.3 73 86.3
Dinv19108 Davidia involucrata HOM05D000141 ORTHO05D004489 2.3e-30 135.6 73 86.3
Lj2C507G14 Lonicera japonica HOM05D000141 ORTHO05D004489 2.3e-30 135.6 73 86.3
Glyma.01G155300 Glycine max HOM05D000141 ORTHO05D004489 3.0e-30 135.2 73 84.9
Lj4g0000360 Lotus japonicus HOM05D000141 ORTHO05D004489 3.0e-30 135.2 73 86.3
MD15G1226100 Malus domestica HOM05D000141 ORTHO05D004489 3.0e-30 135.2 73 86.3
Phvul.002G120200 Phaseolus vulgaris HOM05D000141 ORTHO05D004489 3.0e-30 135.2 73 83.6
Haze_03652 Corylus avellana HOM05D000141 ORTHO05D004489 3.9e-30 134.8 73 83.6
Glyma.11G089400 Glycine max HOM05D000141 ORTHO05D004489 3.9e-30 134.8 73 84.9
Nitab4.5_0000973g0040 Nicotiana tabacum HOM05D000141 ORTHO05D004489 3.9e-30 134.8 98 67.3
Potri.011G146700 Populus trichocarpa HOM05D000141 ORTHO05D004489 5.1e-30 134.4 73 84.9
GSVIVG01026414001 Vitis vinifera HOM05D000141 ORTHO05D004489 5.1e-30 134.4 73 82.2
Nn6g31557 Nelumbo nucifera HOM05D000141 ORTHO05D004489 8.7e-30 133.7 73 84.9
Oeu025038.1 Olea europaea HOM05D000141 ORTHO05D004489 8.7e-30 133.7 73 82.2
HPP92_022037 Vanilla planifolia HOM05D000141 ORTHO05D004489 8.7e-30 133.7 98 64.3
VMungo1215G2882 Vigna mungo HOM05D000141 ORTHO05D004489 8.7e-30 133.7 73 83.6
ECA238G3829 Erigeron canadensis HOM05D000141 ORTHO05D004489 1.1e-29 133.3 73 86.3
Os04g0666900 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D004489 1.1e-29 133.3 73 83.6
PSO170G4746 Papaver somniferum HOM05D000141 ORTHO05D004489 1.1e-29 133.3 73 86.3
SEGI_37552 Sequoiadendron giganteum HOM05D000141 ORTHO05D004489 1.1e-29 133.3 73 84.9
Zm00001eb067080 Zea mays HOM05D000141 ORTHO05D004489 1.1e-29 133.3 73 83.6
CANSAT25G2595 Cannabis sativa HOM05D000141 ORTHO05D004489 1.5e-29 132.9 80 80.0
Gohir.D03G000600 Gossypium hirsutum HOM05D000141 ORTHO05D004489 1.5e-29 132.9 98 67.3
Gorai.003G001000 Gossypium raimondii HOM05D000141 ORTHO05D004489 1.5e-29 132.9 98 67.3
Lj2g0025271 Lotus japonicus HOM05D000141 ORTHO05D004489 1.5e-29 132.9 73 84.9
HanXRQChr14g0443671 Helianthus annuus HOM05D000141 ORTHO05D004489 1.9e-29 132.5 73 86.3
Sabra11G0131600 Salix brachista HOM05D000141 ORTHO05D004489 1.9e-29 132.5 73 84.9
Lsat_1_v5_gn_2_72800 Lactuca sativa HOM05D000141 ORTHO05D004489 2.5e-29 132.1 73 84.9
Lalb_Chr16g0391741 Lupinus albus HOM05D000141 ORTHO05D004489 3.3e-29 131.7 73 82.2
Oeu004295.1 Olea europaea HOM05D000141 ORTHO05D004489 3.3e-29 131.7 73 80.8
Gohir.A02G179100 Gossypium hirsutum HOM05D000141 ORTHO05D004489 4.3e-29 131.3 98 66.3
Nitab4.5_0011544g0030 Nicotiana tabacum HOM05D000141 ORTHO05D004489 4.3e-29 131.3 73 83.6
DCAR_000973 Daucus carota HOM05D000141 ORTHO05D004489 5.6e-29 131.0 73 83.6
Duzib147G0825 Durio zibethinus HOM05D000141 ORTHO05D004489 5.6e-29 131.0 98 67.3
Sc03g0004200 Simmondsia chinensis HOM05D000141 ORTHO05D004489 7.3e-29 130.6 73 83.6
Psat4g106800 Pisum sativum HOM05D000141 ORTHO05D004489 1.3e-28 129.8 73 80.8
MBI01_g31984_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004489 1.6e-28 129.4 73 80.8
MSTRG.3653 Avicennia marina HOM05D000141 ORTHO05D004489 2.1e-28 129.0 73 83.6
CDE11G0155 Ceratophyllum demersum HOM05D000141 ORTHO05D004489 2.1e-28 129.0 92 68.5
Ca_22442_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 2.1e-28 129.0 73 83.6
Ca_22449_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004489 2.1e-28 129.0 73 83.6
Medtr8g072430 Medicago truncatula HOM05D000141 ORTHO05D004489 2.1e-28 129.0 73 82.2
Sed0006453 Sechium edule HOM05D000141 ORTHO05D004489 3.6e-28 128.3 99 63.6
MELO3C013702.2 Cucumis melo HOM05D000141 ORTHO05D004489 4.8e-28 127.9 73 79.5
CsaV3_3G000070 Cucumis sativus L. HOM05D000141 ORTHO05D004489 4.8e-28 127.9 73 79.5
CsaV3_UNG147160 Cucumis sativus L. HOM05D000141 ORTHO05D004489 4.8e-28 127.9 73 79.5
ATR0605G264 Amborella trichopoda HOM05D000141 ORTHO05D004489 6.2e-28 127.5 73 79.5
Potri.001G455300 Populus trichocarpa HOM05D000141 ORTHO05D004489 6.2e-28 127.5 73 83.6
Sabra16G0308000 Salix brachista HOM05D000141 ORTHO05D004489 6.2e-28 127.5 73 83.6
THA.LOC104824715 Tarenaya hassleriana HOM05D000141 ORTHO05D004489 8.1e-28 127.1 73 79.5
TPR.G14268 Trifolium pratense HOM05D000141 ORTHO05D004489 1.1e-27 126.7 73 82.2
Aa31LG1G14480 Aethionema arabicum HOM05D000522 ORTHO05D004489 1.8e-27 125.9 73 80.8
AT5G65930 Arabidopsis thaliana HOM05D000141 ORTHO05D004489 1.8e-27 125.9 73 80.8
BcaB04g20133 Brassica carinata HOM05D000141 ORTHO05D004489 1.8e-27 125.9 73 80.8
Carub.0008s2860 Capsella rubella HOM05D000141 ORTHO05D004489 1.8e-27 125.9 73 80.8
CARHR053030 Cardamine hirsuta HOM05D000141 ORTHO05D004489 1.8e-27 125.9 73 79.5
Lalb_Chr09g0324901 Lupinus albus HOM05D000141 ORTHO05D004489 2.4e-27 125.6 73 78.1
SGA_v2.0_scaffold45G17090 Striga asiatica HOM05D000141 ORTHO05D004489 2.4e-27 125.6 73 79.5
BolC2t12563H Brassica oleracea HOM05D000141 ORTHO05D004489 3.1e-27 125.2 73 80.8
ClCG10G000070 Citrullus lanatus HOM05D000141 ORTHO05D004489 3.1e-27 125.2 74 78.4
Medtr5g025100 Medicago truncatula HOM05D000141 ORTHO05D004489 3.1e-27 125.2 72 77.8
Thhalv10003527m.g Eutrema salsugineum HOM05D000141 ORTHO05D004489 4.0e-27 124.8 73 79.5
SGA_v2.0_scaffold229G43289 Striga asiatica HOM05D000141 ORTHO05D004489 4.0e-27 124.8 73 80.8
AL8G45710 Arabidopsis lyrata HOM05D000141 ORTHO05D004489 5.3e-27 124.4 73 79.5
EL10Ac6g14723 Beta vulgaris HOM05D000141 ORTHO05D004489 6.9e-27 124.0 73 78.1
Ah.03g149230 Amaranthus hybridus HOM05D000141 ORTHO05D004489 9.0e-27 123.6 73 78.1
AUR62003324 Chenopodium quinoa HOM05D000141 ORTHO05D004489 9.0e-27 123.6 73 78.1
Sp2g30770 Schrenkiella parvula HOM05D000141 ORTHO05D004489 1.2e-26 123.2 73 78.1
arahy.Tifrunner.gnm1.ann1.77JLPP Arachis hypogaea HOM05D000141 ORTHO05D004489 1.5e-26 122.9 73 79.5
arahy.Tifrunner.gnm1.ann1.L4A5BH Arachis hypogaea HOM05D000141 ORTHO05D004489 1.5e-26 122.9 73 79.5
Psat2g146880 Pisum sativum HOM05D000141 ORTHO05D004489 1.5e-26 122.9 72 76.4
unitig_748.g7256 Utricularia gibba HOM05D000141 ORTHO05D004489 1.5e-26 122.9 73 76.7
BraA02t09381Z Brassica rapa HOM05D000141 ORTHO05D004489 2.0e-26 122.5 72 79.2
AUR62016257 Chenopodium quinoa HOM05D000141 ORTHO05D004489 4.5e-26 121.3 73 76.7
SalBow5G4210 Salvia bowleyana HOM05D000141 ORTHO05D004489 4.5e-26 121.3 73 80.8
AagrBONN_evm.TU.Sc2ySwM_228.4247 Anthoceros agrestis HOM05D000141 ORTHO05D004489 7.6e-26 120.6 73 74.0
Sed0022500 Sechium edule HOM05D000141 ORTHO05D004489 7.6e-26 120.6 73 74.0
A09p10250 Brassica napus HOM05D000141 ORTHO05D004489 1.3e-25 119.8 74 78.4
BraA09t36670Z Brassica rapa HOM05D000141 ORTHO05D004489 1.3e-25 119.8 74 78.4
BcaC04g23100 Brassica carinata HOM05D000141 ORTHO05D004489 2.2e-25 119.0 74 77.0
C09p12180 Brassica napus HOM05D000141 ORTHO05D004489 2.2e-25 119.0 74 77.0
BolC9t54106H Brassica oleracea HOM05D000141 ORTHO05D004489 2.2e-25 119.0 74 77.0
vmacro18483 Vaccinium macrocarpon HOM05D000141 ORTHO05D004489 1.9e-24 115.9 92 62.0
Rhsim08G0024500 Rhododendron simsii HOM05D000141 ORTHO05D004489 3.2e-24 115.2 73 74.0
Mapoly0012s0174 Marchantia polymorpha HOM05D000141 ORTHO05D004489 9.3e-24 113.6 73 68.5
SMO118G0228 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 1.2e-23 113.2 73 65.8
SMO222G0019 Selaginella moellendorffii HOM05D000141 ORTHO05D004489 1.2e-23 113.2 73 65.8
CBR_g9092 Chara braunii HOM05D000141 ORTHO05D004489 4.6e-23 111.3 73 69.9
COL.COLO4_22572 Corchorus olitorius HOM05D000141 ORTHO05D004489 6.0e-23 110.9 73 74.0
Pp3c2_29920 Physcomitrium patens HOM05D000141 ORTHO05D004489 1.3e-22 109.8 73 69.9
Pp3c11_5890 Physcomitrium patens HOM05D000141 ORTHO05D004489 6.7e-22 107.5 73 68.5
SHI32497 Sapria himalayana HOM05D000141 ORTHO05D016149 8.7e-22 107.1 89 58.4
Pp3c15_3730 Physcomitrium patens HOM05D000141 ORTHO05D004489 2.5e-21 105.5 73 65.8
Pp3c9_4530 Physcomitrium patens HOM05D000141 ORTHO05D004489 4.3e-21 104.8 73 64.4
arahy.Tifrunner.gnm1.ann1.C6YA57 Arachis hypogaea HOM05D000141 ORTHO05D004489 9.6e-21 103.6 55 85.5
arahy.Tifrunner.gnm1.ann1.SMPN38 Arachis hypogaea HOM05D000141 ORTHO05D004489 9.6e-21 103.6 55 85.5
CBR_g8104 Chara braunii HOM05D000141 ORTHO05D004489 1.4e-19 99.8 74 63.5
Thecc.07G194700 Theobroma cacao HOM05D000141 ORTHO05D016149 9.9e-18 93.6 54 79.6
Dinv28284 Davidia involucrata HOM05D000141 ORTHO05D004489 9.3e-16 87.0 44 90.9
HPP92_023789 Vanilla planifolia HOM05D000141 ORTHO05D004489 6.7e-14 80.9 73 58.9
Cre06.g278125 Chlamydomonas reinhardtii HOM05D000141 ORTHO05D004489 3.4e-10 68.6 74 48.6
PRCOL_00006273 Prasinoderma coloniale HOM05D000141 ORTHO05D004489 4.6e-07 58.2 73 39.7


User provided reference genes

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