Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.8e-311 1071.6 531 100.0
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 7.0e-306 1053.1 549 96.2
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 1.8e-229 799.3 494 78.7
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 1.1e-226 790.0 541 73.0
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 2.4e-205 719.2 457 75.7
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 8.8e-200 700.7 454 74.4
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 1.6e-196 689.9 455 72.1
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 4.5e-196 688.3 531 65.0
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 5.9e-196 688.0 498 66.9
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 6.5e-195 684.5 455 71.4
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 1.6e-193 679.9 464 71.1
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 6.1e-193 677.9 455 70.8
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 8.0e-193 677.6 457 70.5
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 3.0e-192 675.6 454 72.7
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 8.8e-192 674.1 457 69.4
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 3.4e-191 672.2 455 70.1
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 3.4e-191 672.2 463 68.7
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 5.7e-191 671.4 466 70.2
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 7.5e-191 671.0 487 66.1
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 9.8e-191 670.6 467 69.0
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 1.3e-190 670.2 454 71.4
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 5.4e-189 664.8 462 69.9
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 9.2e-189 664.1 532 61.5
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 2.7e-188 662.5 452 67.9
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 2.7e-188 662.5 457 70.5
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 7.7e-188 661.0 454 69.6
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 3.3e-186 655.6 533 61.2
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 7.3e-186 654.4 463 68.5
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 1.5e-183 646.7 528 60.2
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 2.6e-183 646.0 511 62.4
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 7.5e-183 644.4 464 65.7
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 9.8e-183 644.0 459 68.0
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 4.9e-182 641.7 464 65.3
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 1.4e-181 640.2 455 67.5
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.8e-181 639.8 449 65.9
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 1.8e-181 639.8 461 67.7
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 3.2e-181 639.0 468 69.0
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 5.4e-181 638.3 533 60.6
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 2.7e-180 636.0 461 65.1
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 5.6e-178 628.2 454 65.9
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 7.3e-178 627.9 457 67.6
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 7.3e-178 627.9 454 65.6
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 3.6e-177 625.5 454 64.8
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 6.2e-177 624.8 545 57.1
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.0e-176 624.0 454 64.5
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 4.0e-176 622.1 461 64.2
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 8.9e-176 620.9 454 65.6
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 1.5e-175 620.2 468 63.9
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 1.5e-175 620.2 457 64.6
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 4.4e-175 618.6 498 60.6
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 5.8e-175 618.2 462 65.4
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 9.8e-175 617.5 460 65.2
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 2.2e-174 616.3 461 63.6
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 2.4e-173 612.8 454 65.2
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 5.4e-173 611.7 461 62.5
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 7.0e-173 611.3 466 62.4
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 1.6e-169 600.1 463 63.3
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 2.1e-169 599.7 528 57.2
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 4.7e-169 598.6 463 63.1
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 3.1e-168 595.9 461 62.9
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 5.2e-168 595.1 454 64.3
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 1.3e-166 590.5 340 83.2
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 1.3e-166 590.5 457 61.7
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 4.9e-166 588.6 384 72.9
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 1.1e-165 587.4 455 61.5
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 3.5e-164 582.4 458 62.2
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 4.3e-162 575.5 496 61.3
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 2.8e-161 572.8 455 60.9
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 1.1e-160 570.9 461 60.5
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 1.5e-159 567.0 454 61.7
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 7.6e-159 564.7 488 57.6
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 1.7e-158 563.5 458 59.4
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 2.4e-157 559.7 490 58.2
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 7.1e-157 558.1 485 57.3
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 3.5e-156 555.8 461 59.4
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 3.0e-155 552.7 451 59.9
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 6.6e-155 551.6 451 59.6
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 9.6e-154 547.7 501 54.1
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 2.1e-153 546.6 458 59.0
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 4.0e-152 542.3 451 59.6
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 2.6e-151 539.7 454 56.6
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 4.4e-151 538.9 461 57.5
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 5.8e-151 538.5 451 59.2
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 3.2e-149 532.7 473 53.9
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 7.1e-149 531.6 464 57.8
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 2.7e-148 529.6 461 57.5
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.1e-146 524.2 461 58.4
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 3.6e-145 519.2 465 57.8
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 1.4e-144 517.3 352 69.3
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 1.9e-138 496.9 361 66.2
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 3.8e-134 482.6 482 53.1
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 3.8e-134 482.6 482 53.1
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 3.5e-132 476.1 349 65.3
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 2.3e-131 473.4 257 93.0
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 1.1e-130 471.1 549 48.8
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 1.5e-130 470.7 456 51.1
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 4.2e-125 452.6 360 62.5
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 1.3e-123 447.6 461 48.6
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 1.1e-122 444.5 455 49.7
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 1.4e-120 437.6 374 58.8
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 3.1e-120 436.4 462 50.0
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 2.5e-114 416.8 300 65.7
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 6.3e-113 412.1 363 58.4
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 1.1e-112 411.4 343 59.5
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 3.1e-112 409.8 470 44.9
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 2.6e-111 406.8 464 48.3
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 1.7e-110 404.1 503 43.7
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 3.4e-103 379.8 409 46.7
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 1.7e-102 377.5 367 53.1
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 7.0e-80 302.4 313 49.2
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 4.1e-72 276.6 478 38.7
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 1.7e-70 271.2 184 69.6
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 2.5e-69 267.3 267 50.2
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 2.3e-67 260.8 208 60.1
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.7e-65 254.6 167 69.5
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 3.7e-65 253.4 196 64.3
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 5.4e-64 249.6 179 67.0
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 4.9e-57 226.5 190 59.5
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 7.5e-50 202.6 147 65.3
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 1.4e-43 181.8 117 71.8
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 2.0e-42 177.9 116 69.0
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 3.1e-27 127.5 146 47.3
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.5e-21 108.6 62 75.8
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 9.0e-19 99.4 103 48.5
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 2.7e-15 87.8 79 55.7
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 5.8e-10 70.1 87 42.5
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 4.9e-09 67.0 158 36.7
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 1.6e-07 62.0 42 57.1


User provided reference genes

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