Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 2.7e-106 388.7 196 100.0
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.1e-65 253.8 191 66.0
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 6.8e-65 251.1 198 67.7
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 2.0e-64 249.6 198 63.6
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 5.8e-64 248.1 204 66.2
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 8.3e-63 244.2 193 61.7
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 1.9e-62 243.0 198 58.6
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 1.6e-61 240.0 184 64.1
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 4.6e-61 238.4 197 58.9
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 2.3e-60 236.1 193 61.1
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 3.9e-60 235.3 194 62.9
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 5.1e-60 235.0 187 62.6
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 1.1e-59 233.8 187 62.6
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 5.6e-59 231.5 197 59.9
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 5.6e-59 231.5 181 64.6
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 6.2e-58 228.0 181 63.5
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 8.1e-58 227.6 189 58.2
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 8.9e-57 224.2 190 57.4
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 4.4e-56 221.9 187 56.7
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 5.8e-56 221.5 197 57.4
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 5.8e-56 221.5 174 62.1
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 5.8e-56 221.5 174 62.1
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 9.9e-56 220.7 187 57.2
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 2.2e-55 219.5 182 64.8
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 1.9e-54 216.5 174 60.9
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.9e-54 216.5 197 55.8
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 9.2e-54 214.2 187 58.8
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 2.7e-53 212.6 186 59.1
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 3.5e-53 212.2 173 61.3
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 4.6e-53 211.8 194 55.7
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 5.1e-52 208.4 186 58.1
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 8.7e-52 207.6 181 57.5
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 2.5e-51 206.1 184 55.4
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 3.3e-51 205.7 187 57.2
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 5.6e-51 204.9 150 72.0
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 9.6e-51 204.1 193 55.4
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 2.1e-50 203.0 173 59.5
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 2.8e-50 202.6 193 53.9
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.4e-49 200.3 185 56.2
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 1.8e-49 199.9 180 58.3
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 3.1e-49 199.1 179 59.2
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 6.9e-49 198.0 191 54.5
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 3.4e-48 195.7 190 54.2
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 3.4e-48 195.7 198 51.0
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 7.6e-48 194.5 187 54.5
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 2.9e-47 192.6 194 51.0
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 3.8e-47 192.2 191 50.3
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 8.4e-47 191.0 175 62.9
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 2.4e-46 189.5 186 51.1
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.4e-46 189.5 174 62.1
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 7.1e-46 188.0 192 52.1
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 2.7e-45 186.0 200 55.0
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 3.5e-45 185.7 182 54.9
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 6.0e-45 184.9 175 58.3
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 7.8e-45 184.5 197 52.3
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.0e-44 184.1 178 55.1
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 2.3e-44 183.0 194 54.6
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.9e-44 182.2 178 54.5
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 5.6e-43 178.3 183 55.2
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 3.6e-42 175.6 186 48.4
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 6.2e-42 174.9 180 52.2
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.1e-41 174.1 147 59.9
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 1.8e-41 173.3 177 52.5
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.5e-40 170.2 175 58.3
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 2.0e-40 169.9 161 54.0
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 9.9e-40 167.5 187 52.4
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 1.7e-39 166.8 186 47.3
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 1.4e-38 163.7 180 51.1
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 7.1e-38 161.4 115 71.3
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 1.2e-37 160.6 186 46.8
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 2.1e-37 159.8 194 43.8
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 6.0e-37 158.3 180 45.6
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 1.8e-36 156.8 147 56.5
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 3.0e-36 156.0 181 49.2
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 5.1e-36 155.2 177 48.0
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 8.7e-36 154.5 184 48.4
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 8.7e-36 154.5 181 45.9
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 5.6e-35 151.8 182 45.6
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 9.6e-35 151.0 176 47.2
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 9.6e-35 151.0 194 45.9
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 2.1e-34 149.8 180 46.7
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 2.1e-34 149.8 180 46.7
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 3.7e-34 149.1 185 45.4
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 3.7e-34 149.1 185 45.4
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 3.1e-33 146.0 179 47.5
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 9.0e-33 144.4 187 47.1
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 1.5e-32 143.7 188 44.7
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 7.6e-32 141.4 186 44.6
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.3e-31 140.6 164 47.6
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 1.3e-31 140.6 169 45.0
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 1.7e-31 140.2 175 41.7
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 4.9e-31 138.7 177 47.5
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 4.9e-31 138.7 151 51.0
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 6.4e-31 138.3 175 43.4
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 6.4e-31 138.3 185 44.3
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 6.4e-31 138.3 184 40.8
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 1.4e-30 137.1 188 39.9
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 3.2e-30 136.0 157 47.8
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 3.2e-30 136.0 154 47.4
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 7.1e-30 134.8 179 43.0
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 4.6e-29 132.1 138 48.6
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 1.0e-28 131.0 185 42.2
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 2.3e-28 129.8 178 40.4
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 5.1e-28 128.6 185 41.6
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 2.5e-27 126.3 183 38.3
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 9.6e-27 124.4 138 46.4
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 1.6e-26 123.6 174 43.7
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 2.1e-26 123.2 130 53.1
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 6.2e-26 121.7 178 42.7
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 1.8e-25 120.2 183 40.4
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 3.1e-25 119.4 191 37.7
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 4.0e-25 119.0 187 40.1
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 2.6e-24 116.3 116 54.3
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 1.7e-23 113.6 141 44.7
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 4.6e-21 105.5 181 42.5
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 2.2e-18 96.7 136 44.1
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.5e-16 90.5 135 40.7
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 1.4e-14 84.0 168 38.1
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 6.1e-13 78.6 151 37.1
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 3.9e-12 75.9 108 45.4
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 3.9e-12 75.9 108 44.4
DCAR_019537 Daucus carota HOM05D006278 ORTHO05D007526 8.8e-12 74.7 124 38.7
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 1.5e-11 73.9 108 44.4
DCAR_020977 Daucus carota HOM05D006278 ORTHO05D007526 9.1e-09 64.7 135 32.6
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 2.0e-08 63.5 121 39.7
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 5.9e-08 62.0 110 36.4
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 5.9e-08 62.0 110 35.5
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 7.7e-08 61.6 118 33.9
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 1.0e-07 61.2 107 36.4
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.0e-07 61.2 130 36.2
Sed0011246 Sechium edule HOM05D006278 ORTHO05D007526 1.3e-07 60.8 107 35.5
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.2e-07 60.1 110 39.1
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 2.9e-07 59.7 105 39.0
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 5.0e-07 58.9 103 39.8
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 8.5e-07 58.2 113 31.9
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.1e-06 57.8 110 38.2
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 1.4e-06 57.4 110 37.3
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 1.9e-06 57.0 133 30.8
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 1.9e-06 57.0 110 33.6
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.9e-06 57.0 109 34.9
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.5e-06 56.6 110 32.7
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 2.5e-06 56.6 109 34.9
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 2.5e-06 56.6 111 36.9
Zm00001eb309990 Zea mays HOM05D065992 ORTHO05D037126 2.5e-06 56.6 183 29.5
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 3.2e-06 56.2 113 34.5
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 3.2e-06 56.2 142 32.4
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 3.2e-06 56.2 113 38.1
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 3.2e-06 56.2 112 33.9
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 3.2e-06 56.2 121 36.4
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 3.2e-06 56.2 108 34.3
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 3.2e-06 56.2 117 37.6
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 4.2e-06 55.8 106 35.8
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 4.2e-06 55.8 113 35.4
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 5.5e-06 55.5 108 38.9
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 5.5e-06 55.5 108 41.7
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 7.2e-06 55.1 126 35.7
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 7.2e-06 55.1 112 31.2
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 9.4e-06 54.7 142 31.0


User provided reference genes

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