Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025987 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.8e-78 295.8 148 100.0
CSS0049690 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 1.8e-78 295.8 148 100.0
vmacro09651 Vaccinium macrocarpon HOM05D005924 ORTHO05D007290 2.7e-58 228.8 145 82.1
Rhsim04G0012900 Rhododendron simsii HOM05D005924 ORTHO05D007290 1.4e-57 226.5 143 83.9
CSS0023895 Camellia sinensis var. sinensis HOM05D005924 ORTHO05D007290 3.7e-55 218.4 149 79.9
Dinv10325 Davidia involucrata HOM05D005924 ORTHO05D007290 2.7e-53 212.2 153 79.1
Actinidia26779 Actinidia chinensis HOM05D005924 ORTHO05D007290 5.9e-53 211.1 144 79.2
Actinidia30411 Actinidia chinensis HOM05D005924 ORTHO05D007290 7.7e-53 210.7 149 74.5
Dinv40851 Davidia involucrata HOM05D005924 ORTHO05D007290 1.2e-50 203.4 148 78.4
Duzib213G0633 Durio zibethinus HOM05D005924 ORTHO05D007290 2.1e-50 202.6 149 72.5
Ciclev10009817m.g Citrus clementina HOM05D005924 ORTHO05D007290 2.7e-50 202.2 150 76.0
Hma1.2p1_0036F.1_g022440 Hydrangea macrophylla HOM05D005924 ORTHO05D007290 3.6e-50 201.8 150 75.3
TWI38G0037 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 4.0e-49 198.4 148 74.3
COL.COLO4_09820 Corchorus olitorius HOM05D005924 ORTHO05D007290 8.8e-49 197.2 150 70.7
QL11p054318 Quercus lobata HOM05D005924 ORTHO05D007290 8.8e-49 197.2 149 74.5
QL08p004337 Quercus lobata HOM05D005924 ORTHO05D007290 2.0e-48 196.1 149 73.8
Gohir.A04G006200 Gossypium hirsutum HOM05D005924 ORTHO05D007290 5.7e-48 194.5 150 71.3
Thecc.07G014800 Theobroma cacao HOM05D005924 ORTHO05D007290 7.5e-48 194.1 149 69.8
Ca_06392_v3 Cicer arietinum L. HOM05D005924 ORTHO05D007290 2.2e-47 192.6 146 70.5
Actinidia37157 Actinidia chinensis HOM05D005924 ORTHO05D007290 2.8e-47 192.2 144 75.0
CiPaw.12G137600 Carya illinoinensis HOM05D005924 ORTHO05D007290 6.3e-47 191.0 145 75.2
Cfa020200 Carpinus fangiana HOM05D005924 ORTHO05D007290 1.4e-46 189.9 150 72.7
Haze_09815 Corylus avellana HOM05D005924 ORTHO05D007290 1.8e-46 189.5 150 72.7
Manes.15G060600 Manihot esculenta HOM05D005924 ORTHO05D007290 1.8e-46 189.5 145 73.1
Gohir.D05G383300 Gossypium hirsutum HOM05D005924 ORTHO05D007290 3.1e-46 188.7 150 70.0
GSVIVG01014668001 Vitis vinifera HOM05D005924 ORTHO05D007290 3.1e-46 188.7 147 73.5
TWI39G1162 Tripterygium wilfordii HOM05D005924 ORTHO05D007290 4.5e-45 184.9 152 69.7
CANSAT11G0122 Cannabis sativa HOM05D005924 ORTHO05D007290 5.9e-45 184.5 151 68.2
Lalb_Chr04g0247881 Lupinus albus HOM05D005924 ORTHO05D007290 1.3e-44 183.3 145 67.6
CiPaw.11G203100 Carya illinoinensis HOM05D005924 ORTHO05D007290 2.9e-44 182.2 148 68.2
arahy.Tifrunner.gnm1.ann1.7P25LN Arachis hypogaea HOM05D005924 ORTHO05D007290 3.8e-44 181.8 145 67.6
arahy.Tifrunner.gnm1.ann1.RJW0MD Arachis hypogaea HOM05D005924 ORTHO05D007290 3.8e-44 181.8 145 67.6
MD11G1201100 Malus domestica HOM05D005924 ORTHO05D007290 3.8e-44 181.8 145 71.7
FvH4_3g29370 Fragaria vesca HOM05D005924 ORTHO05D007290 8.6e-44 180.6 151 66.9
FAN11G0697 Fragaria x ananassa HOM05D005924 ORTHO05D007290 8.6e-44 180.6 151 66.9
MD03G1184300 Malus domestica HOM05D005924 ORTHO05D007290 8.6e-44 180.6 145 69.7
Prupe.4G242300 Prunus persica HOM05D005924 ORTHO05D007290 8.6e-44 180.6 145 70.3
Sabra16G0240500 Salix brachista HOM05D005924 ORTHO05D007290 1.1e-43 180.3 146 67.1
TAR629G1982 Trochodendron aralioides HOM05D001060 ORTHO05D000905 1.1e-43 180.3 144 68.1
Cc05_g14880 Coffea canephora HOM05D005924 ORTHO05D007290 1.5e-43 179.9 145 65.5
Oeu057095.1 Olea europaea HOM05D005924 ORTHO05D007290 1.9e-43 179.5 146 70.5
ATR0624G098 Amborella trichopoda HOM05D005924 ORTHO05D007290 3.3e-43 178.7 144 66.7
Lj8A178T78 Lonicera japonica HOM05D005924 ORTHO05D007290 4.2e-43 178.3 132 76.5
FAN21G3132 Fragaria x ananassa HOM05D005924 ORTHO05D007290 5.5e-43 177.9 151 66.2
FAN25G0770 Fragaria x ananassa HOM05D005924 ORTHO05D007290 5.5e-43 177.9 150 67.3
Medtr5g095700 Medicago truncatula HOM05D005924 ORTHO05D007290 7.2e-43 177.6 146 65.1
RcHm_v2.0_Chr5g0053761 Rosa chinensis HOM05D005924 ORTHO05D007290 7.2e-43 177.6 154 66.2
Eucgr.F02053 Eucalyptus grandis HOM05D005924 ORTHO05D007290 1.2e-42 176.8 150 64.7
Hund23125 Selenicereus undatus HOM05D005924 ORTHO05D007290 2.1e-42 176.0 148 64.9
EL10Ac4g07594 Beta vulgaris HOM05D005924 ORTHO05D007290 2.8e-42 175.6 143 65.7
Nn1g03196 Nelumbo nucifera HOM05D005924 ORTHO05D007290 3.6e-42 175.3 147 68.0
ECA246G3128 Erigeron canadensis HOM05D005924 ORTHO05D007290 4.7e-42 174.9 149 63.1
Aqoxy1G04252 Aquilegia oxysepala HOM05D005924 ORTHO05D007290 6.1e-42 174.5 150 63.3
AUR62036442 Chenopodium quinoa HOM05D005924 ORTHO05D007290 6.1e-42 174.5 149 66.4
Cpa.g.sc12.154 Carica papaya HOM05D005924 ORTHO05D007290 1.0e-41 173.7 131 74.8
Phvul.008G278700 Phaseolus vulgaris HOM05D005924 ORTHO05D007290 1.0e-41 173.7 145 66.9
Gorai.009G449900 Gossypium raimondii HOM05D005924 ORTHO05D007290 1.8e-41 172.9 183 57.4
Lj6g0020710 Lotus japonicus HOM05D005924 ORTHO05D007290 2.3e-41 172.6 143 67.1
Oeu049375.1 Olea europaea HOM05D005924 ORTHO05D007290 2.3e-41 172.6 145 68.3
AUR62036411 Chenopodium quinoa HOM05D005924 ORTHO05D007290 3.0e-41 172.2 149 66.4
Potri.001G367200 Populus trichocarpa HOM05D005924 ORTHO05D007290 4.0e-41 171.8 147 66.7
TPR.G8617 Trifolium pratense HOM05D005924 ORTHO05D007290 8.9e-41 170.6 148 67.6
PSO302G0279 Papaver somniferum HOM05D005924 ORTHO05D007290 1.2e-40 170.2 150 64.7
SGA_v2.0_scaffold8G04406 Striga asiatica HOM05D005924 ORTHO05D007290 1.2e-40 170.2 146 65.1
VMungo0647G1823 Vigna mungo HOM05D005924 ORTHO05D007290 1.2e-40 170.2 145 65.5
AUR62017085 Chenopodium quinoa HOM05D005924 ORTHO05D007290 2.6e-40 169.1 149 65.8
MSTRG.13019 Avicennia marina HOM05D005924 ORTHO05D007290 5.7e-40 167.9 147 66.7
PSO210G6324 Papaver somniferum HOM05D005924 ORTHO05D007290 5.7e-40 167.9 150 64.0
Psat2g007680 Pisum sativum HOM05D000001 ORTHO05D000003 5.7e-40 167.9 145 61.4
PGR083G1797 Punica granatum HOM05D005924 ORTHO05D007290 9.8e-40 167.2 151 64.9
ClCG09G021250 Citrullus lanatus HOM05D005924 ORTHO05D007290 1.7e-39 166.4 143 62.9
Glyma.14G013900 Glycine max HOM05D005924 ORTHO05D007290 3.7e-39 165.2 145 64.8
Glyma.02G300000 Glycine max HOM05D005924 ORTHO05D007290 1.4e-38 163.3 134 64.9
Lsat_1_v5_gn_5_1420 Lactuca sativa HOM05D005924 ORTHO05D007290 1.4e-38 163.3 149 62.4
MBI19_g12833_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 1.8e-38 162.9 146 63.0
Sed0014433 Sechium edule HOM05D005924 ORTHO05D007290 2.4e-38 162.5 144 64.6
Nitab4.5_0014607g0010 Nicotiana tabacum HOM05D005924 ORTHO05D007290 3.1e-38 162.2 148 62.8
Sc16g0008020 Simmondsia chinensis HOM05D005924 ORTHO05D007290 4.1e-38 161.8 148 62.2
CsaV3_7G015090 Cucumis sativus L. HOM05D005924 ORTHO05D007290 7.0e-38 161.0 143 61.5
HanXRQChr08g0231191 Helianthus annuus HOM05D005924 ORTHO05D007290 1.6e-37 159.8 146 58.9
Nitab4.5_0000461g0270 Nicotiana tabacum HOM05D005924 ORTHO05D007290 2.7e-37 159.1 148 62.8
AT5G55640 Arabidopsis thaliana HOM05D005924 ORTHO05D007290 3.5e-37 158.7 146 58.9
Thhalv10014966m.g Eutrema salsugineum HOM05D005924 ORTHO05D007290 1.7e-36 156.4 147 61.9
PGSC0003DMG400022173 Solanum tuberosum HOM05D005924 ORTHO05D007290 2.9e-36 155.6 145 60.7
Oeu049390.1 Olea europaea HOM05D005924 ORTHO05D007290 3.8e-36 155.2 131 69.5
DCAR_018844 Daucus carota HOM05D005924 ORTHO05D007290 5.0e-36 154.8 140 62.1
Peaxi162Scf01164g00127 Petunia axillaris HOM05D005924 ORTHO05D007290 8.6e-36 154.1 133 64.7
MELO3C024930.2 Cucumis melo HOM05D005924 ORTHO05D007290 1.1e-35 153.7 143 59.4
MBI16_g07767_MAGBIO Magnolia biondii HOM05D005924 ORTHO05D007290 5.6e-35 151.4 133 69.2
Carub.0008s1601 Capsella rubella HOM05D005924 ORTHO05D007290 9.5e-35 150.6 146 59.6
THA.LOC104811656 Tarenaya hassleriana HOM05D005924 ORTHO05D007290 1.2e-34 150.2 148 58.8
Migut.H01759 Erythranthe guttata HOM05D005924 ORTHO05D007290 1.6e-34 149.8 147 59.9
Sopen07g033690 Solanum pennellii HOM05D005924 ORTHO05D007290 3.6e-34 148.7 145 58.6
Solyc07g065480.3 Solanum lycopersicum HOM05D005924 ORTHO05D007290 4.7e-34 148.3 145 58.6
Sed0006731 Sechium edule HOM05D005924 ORTHO05D007290 8.0e-34 147.5 145 62.8
AL8G31220 Arabidopsis lyrata HOM05D005924 ORTHO05D007290 1.4e-33 146.7 131 61.1
Sp6g17560 Schrenkiella parvula HOM05D005924 ORTHO05D007290 2.3e-33 146.0 135 63.7
Ah.06g181380 Amaranthus hybridus HOM05D000864 ORTHO05D002353 3.0e-33 145.6 128 62.5
unitig_0.g996 Utricularia gibba HOM05D005924 ORTHO05D007290 3.4e-32 142.1 142 55.6
BcaC04g20212 Brassica carinata HOM05D005924 ORTHO05D007290 2.2e-31 139.4 129 62.0
C09p46620 Brassica napus HOM05D005924 ORTHO05D007290 2.2e-31 139.4 129 62.0
Manes.03G140800 Manihot esculenta HOM05D005924 ORTHO05D007290 2.9e-31 139.0 136 61.8
BolC9t57514H Brassica oleracea HOM05D005924 ORTHO05D007290 5.4e-30 134.8 131 61.1
CDE10G1040 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 5.4e-30 134.8 144 55.6
CDE10G1343 Ceratophyllum demersum HOM05D005924 ORTHO05D007290 9.2e-30 134.0 136 54.4
Aa31LG3G11590 Aethionema arabicum HOM05D005924 ORTHO05D007290 2.0e-29 132.9 152 53.9
CARHR268960 Cardamine hirsuta HOM05D005924 ORTHO05D007290 3.5e-29 132.1 126 61.1
BcaB08g35925 Brassica carinata HOM05D005924 ORTHO05D007290 1.3e-28 130.2 127 59.8
Atru.BG.148.p Acer truncatum HOM05D005924 ORTHO05D007290 2.3e-28 129.4 94 78.7
BraA10t43385Z Brassica rapa HOM05D005924 ORTHO05D007290 3.0e-28 129.0 130 58.5
A10p12930 Brassica napus HOM05D005924 ORTHO05D007290 1.1e-27 127.1 130 58.5
QL08p004311 Quercus lobata HOM05D005924 ORTHO05D007290 4.3e-27 125.2 127 59.8
SEGI_16066 Sequoiadendron giganteum HOM05D005924 ORTHO05D007290 3.6e-26 122.1 147 47.6
HPP92_006039 Vanilla planifolia HOM05D005924 ORTHO05D007290 1.4e-25 120.2 124 57.3
Zm00001eb049780 Zea mays HOM05D005924 ORTHO05D007290 6.8e-25 117.9 147 49.7
Os03g0595200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 1.5e-24 116.7 126 54.8
C09p47070 Brassica napus HOM05D005924 ORTHO05D007290 1.7e-23 113.2 125 56.8
Mapoly0038s0106 Marchantia polymorpha HOM05D005924 ORTHO05D007290 8.3e-23 110.9 147 49.0
Pp3c5_24890 Physcomitrium patens HOM05D005924 ORTHO05D007290 5.4e-22 108.2 147 46.9
BcaC04g20171 Brassica carinata HOM05D005924 ORTHO05D007290 2.1e-21 106.3 91 63.7
Pp3c6_3770 Physcomitrium patens HOM05D005924 ORTHO05D007290 2.1e-21 106.3 149 49.0
TAR626G0711 Trochodendron aralioides HOM05D005924 ORTHO05D007290 1.7e-20 103.2 132 54.5
arahy.Tifrunner.gnm1.ann1.HJ67LJ Arachis hypogaea HOM05D005924 ORTHO05D007290 1.1e-19 100.5 97 61.9
SMO145G0101 Selaginella moellendorffii HOM05D005924 ORTHO05D007290 1.6e-18 96.7 152 42.8
BolC9t57844H Brassica oleracea HOM05D005924 ORTHO05D007290 8.3e-15 84.3 95 57.9
BcaC04g19914 Brassica carinata HOM05D005924 ORTHO05D007290 7.1e-14 81.3 95 55.8
Os03g0412200 Oryza sativa ssp. japonica HOM05D005924 ORTHO05D007290 2.7e-13 79.3 91 50.5
PSO210G6050 Papaver somniferum HOM05D000045 ORTHO05D000067 2.1e-10 69.7 91 54.9
arahy.Tifrunner.gnm1.ann1.7WZH36 Arachis hypogaea HOM05D005924 ORTHO05D007290 1.8e-09 66.6 56 57.1
Zm00001eb019850 Zea mays HOM05D005924 ORTHO05D007290 1.2e-08 63.9 135 37.8
AagrBONN_evm.TU.Sc2ySwM_340.252 Anthoceros agrestis HOM05D005924 ORTHO05D007290 2.2e-07 59.7 105 41.9
TAR371G0507 Trochodendron aralioides HOM05D005924 ORTHO05D007290 6.4e-07 58.2 89 44.9
C09p49910 Brassica napus HOM05D005924 ORTHO05D007290 1.9e-06 56.6 46 56.5


User provided reference genes

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