Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 1.4e-111 406.4 214 100.0
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 1.1e-92 343.6 183 98.4
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 1.1e-92 343.6 183 98.4
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 1.1e-92 343.6 183 98.4
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 1.1e-92 343.6 183 98.4
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 1.1e-92 343.6 183 98.4
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 1.1e-92 343.6 183 98.4
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 5.5e-92 341.3 183 97.8
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 2.1e-91 339.3 183 96.7
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 2.7e-91 339.0 183 97.3
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 2.7e-91 339.0 183 97.3
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 6.1e-91 337.8 183 96.7
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 1.0e-90 337.0 183 97.3
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 1.0e-90 337.0 183 97.3
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 1.0e-90 337.0 183 97.3
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 1.0e-90 337.0 183 97.3
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 1.5e-89 333.2 183 95.6
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 1.5e-89 333.2 183 95.6
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 1.5e-89 333.2 183 95.6
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 1.5e-89 333.2 183 95.6
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 4.3e-89 331.6 183 96.2
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 4.3e-89 331.6 183 96.2
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 4.3e-89 331.6 183 96.2
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.3e-88 330.1 183 95.1
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 1.6e-88 329.7 183 94.5
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 1.6e-88 329.7 183 94.5
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 1.6e-88 329.7 183 94.5
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 1.6e-88 329.7 183 94.5
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 3.7e-88 328.6 183 95.1
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 3.7e-88 328.6 183 94.5
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 3.7e-88 328.6 183 94.5
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 3.7e-88 328.6 183 94.5
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 6.3e-88 327.8 183 95.1
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 5.3e-87 324.7 185 94.6
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 2.6e-86 322.4 185 94.1
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 5.9e-86 321.2 176 96.6
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 7.9e-83 310.8 185 89.7
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 7.9e-83 310.8 185 89.7
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 2.3e-82 309.3 185 89.2
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 8.8e-82 307.4 183 89.1
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 1.5e-81 306.6 187 88.8
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.5e-81 305.8 214 79.9
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 4.3e-81 305.1 183 89.1
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 4.3e-81 305.1 175 92.0
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 7.4e-81 304.3 183 87.4
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 5.9e-78 294.7 183 86.3
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.0e-74 283.9 185 83.2
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 1.6e-70 270.0 183 82.5
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.5e-70 268.5 183 82.5
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 9.4e-68 260.8 176 82.4
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 9.4e-68 260.8 162 86.4
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 6.1e-67 258.1 140 96.4
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 3.7e-64 248.8 168 78.6
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.4e-63 246.9 183 77.6
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 2.0e-62 243.0 130 97.7
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 1.7e-61 240.0 135 92.6
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 3.8e-61 238.8 130 97.7
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.3e-58 229.6 148 81.8
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 4.4e-57 225.3 124 95.2
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 2.5e-52 209.5 117 94.0
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 6.1e-51 204.9 183 63.4
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 9.2e-47 191.0 103 98.1
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 2.1e-43 179.9 115 85.2
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 4.7e-43 178.7 100 92.0
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 4.7e-43 178.7 183 61.7
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 2.0e-38 163.3 95 95.8
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.3e-37 159.8 183 57.9
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 2.5e-36 156.4 89 95.5
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 3.3e-36 156.0 88 96.6
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.5e-28 130.6 175 52.6
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 2.1e-27 126.7 93 74.2
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 5.8e-25 118.6 131 59.5
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 4.1e-23 112.5 61 93.4
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.0e-22 108.6 64 81.2
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 3.0e-21 106.3 57 86.0
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 3.0e-21 106.3 61 88.5
Aqoxy12s041 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.2e-19 100.9 71 85.9
HanXRQChr05g0138841 Helianthus annuus HOM05D003517 ORTHO05D009794 4.4e-17 92.4 57 89.5
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 1.7e-16 90.5 54 87.0
Nitab4.5_0001152g0290 Nicotiana tabacum HOM05D003517 ORTHO05D009794 8.4e-16 88.2 63 79.4
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 1.9e-15 87.0 48 93.8
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 6.0e-14 82.0 44 97.7
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 1.0e-13 81.3 89 61.8
HanXRQChr05g0138831 Helianthus annuus HOM05D003517 ORTHO05D009794 4.7e-11 72.4 37 94.6
HanXRQChr05g0138811 Helianthus annuus HOM05D003517 ORTHO05D009794 4.0e-10 69.3 37 91.9
HanXRQChr05g0138821 Helianthus annuus HOM05D003517 ORTHO05D009794 4.0e-10 69.3 37 91.9
Lj2C1230G62 Lonicera japonica HOM05D014754 ORTHO05D009794 3.8e-08 62.8 40 85.0
CARHR282960 Cardamine hirsuta HOM05D014754 ORTHO05D017434 2.1e-06 57.0 34 88.2


User provided reference genes

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