Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 1.2e-156 556.6 322 100.0
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 6.2e-132 474.6 238 98.3
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 7.6e-130 467.6 325 75.1
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 6.5e-129 464.5 317 74.8
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 1.9e-125 453.0 369 65.6
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 1.3e-124 450.3 324 69.8
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 1.2e-114 417.2 321 66.0
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 3.8e-113 412.1 319 70.5
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 3.8e-113 412.1 242 81.8
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 1.4e-112 410.2 313 65.8
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 4.2e-112 408.7 313 65.5
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 1.6e-111 406.8 313 66.1
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 8.8e-110 401.0 317 65.9
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 2.0e-109 399.8 318 63.5
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 2.5e-109 399.4 312 66.0
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 3.3e-109 399.1 318 63.8
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 4.3e-109 398.7 317 65.0
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.1e-107 394.0 321 63.2
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 1.4e-107 393.7 316 62.7
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 4.1e-107 392.1 319 61.8
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 5.3e-107 391.7 321 62.3
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 1.5e-106 390.2 316 61.4
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 2.0e-106 389.8 318 63.8
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 7.7e-106 387.9 313 62.9
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 1.3e-105 387.1 313 62.9
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 1.3e-105 387.1 317 63.4
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 1.7e-105 386.7 313 62.9
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 8.5e-105 384.4 314 68.8
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 8.5e-105 384.4 309 60.5
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 3.2e-104 382.5 315 61.3
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 4.2e-104 382.1 324 60.2
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 1.2e-103 380.6 313 60.7
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 2.7e-103 379.4 313 60.7
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 3.6e-103 379.0 311 62.4
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 1.8e-102 376.7 335 60.6
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 2.3e-102 376.3 312 65.4
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 2.3e-102 376.3 317 63.7
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 8.8e-102 374.4 323 59.4
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 1.1e-101 374.0 321 61.7
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 3.3e-101 372.5 320 64.1
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 4.4e-101 372.1 324 58.6
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 7.4e-101 371.3 316 68.7
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 9.7e-101 370.9 313 62.3
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 2.2e-100 369.8 321 58.9
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 3.7e-100 369.0 314 61.1
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 3.7e-100 369.0 315 60.0
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 1.4e-99 367.1 325 59.1
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 2.4e-99 366.3 236 72.5
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 7.0e-99 364.8 314 64.6
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 7.0e-99 364.8 314 64.6
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 7.0e-99 364.8 315 59.0
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 9.1e-99 364.4 336 61.6
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 4.5e-98 362.1 322 58.1
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 4.5e-98 362.1 320 62.2
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 7.7e-98 361.3 316 59.8
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 3.8e-97 359.0 318 65.1
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 5.0e-97 358.6 316 59.8
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 5.0e-97 358.6 315 59.7
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 8.5e-97 357.8 325 56.0
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 1.5e-96 357.1 318 61.9
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 1.6e-95 353.6 319 55.8
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 3.0e-94 349.4 340 61.5
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 4.0e-94 349.0 325 54.8
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 4.0e-94 349.0 326 58.6
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 4.0e-94 349.0 326 56.1
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 6.7e-94 348.2 308 55.5
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 2.6e-93 346.3 359 52.6
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 4.4e-93 345.5 326 57.7
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 1.3e-92 344.0 306 55.6
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 1.3e-92 344.0 237 67.9
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 4.8e-92 342.0 329 54.7
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 8.2e-92 341.3 276 63.0
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 1.1e-91 340.9 306 55.9
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.1e-91 340.9 244 67.6
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 1.4e-91 340.5 308 54.2
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 1.4e-91 340.5 306 58.5
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 2.4e-91 339.7 317 54.3
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 3.1e-91 339.3 306 54.9
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 3.1e-91 339.3 308 55.2
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 4.1e-91 339.0 308 54.5
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 9.1e-91 337.8 306 53.6
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 1.6e-90 337.0 309 54.4
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 5.9e-90 335.1 311 56.6
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 7.7e-90 334.7 309 59.5
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 1.0e-89 334.3 309 53.7
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 3.8e-89 332.4 328 61.9
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 1.9e-88 330.1 309 53.1
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 2.5e-88 329.7 306 55.9
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 5.5e-88 328.6 309 60.5
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 5.5e-88 328.6 309 60.5
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 7.2e-88 328.2 309 60.2
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 7.2e-88 328.2 309 60.2
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 7.2e-88 328.2 306 53.6
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 1.4e-86 323.9 321 58.9
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 5.7e-85 318.5 322 59.0
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 8.3e-84 314.7 313 56.9
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 1.1e-83 314.3 314 58.9
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 3.1e-83 312.8 312 52.2
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 3.1e-83 312.8 322 58.7
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 3.1e-83 312.8 313 61.7
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 5.9e-82 308.5 313 52.1
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 1.7e-81 307.0 313 52.4
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 2.2e-81 306.6 325 57.2
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 2.2e-81 306.6 321 50.5
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 1.9e-80 303.5 312 51.3
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 5.5e-80 302.0 307 56.4
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 2.1e-79 300.1 312 56.1
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 8.0e-79 298.1 312 59.0
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 8.0e-79 298.1 311 60.8
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 8.0e-79 298.1 314 56.1
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 3.0e-78 296.2 318 51.6
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 1.5e-77 293.9 184 73.9
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 5.7e-77 292.0 314 57.3
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 9.8e-77 291.2 328 53.4
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 6.3e-76 288.5 312 53.5
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 1.8e-75 287.0 314 55.1
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 4.1e-75 285.8 321 55.1
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 9.2e-75 284.6 318 48.7
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 2.7e-74 283.1 278 58.3
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 4.5e-74 282.3 321 59.2
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 7.7e-74 281.6 306 54.2
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 7.7e-74 281.6 313 48.2
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.0e-70 271.2 330 47.3
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 2.3e-70 270.0 326 46.6
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 2.3e-65 253.4 201 61.2
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 7.3e-64 248.4 317 47.9
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 1.5e-61 240.7 225 59.6
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 2.7e-58 229.9 232 53.0
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.3e-57 227.6 320 44.7
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 1.1e-56 224.6 243 51.0
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 2.1e-55 220.3 182 59.9
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 2.2e-52 210.3 135 72.6
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 7.1e-51 205.3 234 44.9
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 3.9e-49 199.5 244 46.7
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 4.3e-48 196.1 314 35.7
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 2.1e-47 193.7 225 44.4
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 3.0e-41 173.3 208 48.1
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 5.2e-38 162.5 221 40.3
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 8.4e-36 155.2 229 41.5
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 4.2e-35 152.9 112 69.6
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 7.8e-34 148.7 221 41.2
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 7.8e-34 148.7 220 56.4
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 1.3e-28 131.3 157 48.4
Potri.018G145080 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.8e-23 113.6 167 56.9
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.4e-22 111.3 78 67.9
vmacro04071 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 1.2e-21 108.2 112 67.9
QL05p087685 Quercus lobata HOM05D004681 ORTHO05D005541 6.0e-18 95.9 207 34.3
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-17 94.0 185 34.1
SMO367G0296 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.1e-16 91.7 243 32.9
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 1.7e-12 77.8 134 38.1
PRCOL_00000454 Prasinoderma coloniale HOM05D004681 ORTHO05D005541 4.6e-10 69.7 251 26.3
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 2.3e-09 67.4 114 50.0
HanXRQChr04g0105741 Helianthus annuus HOM05D004681 ORTHO05D005541 1.1e-08 65.1 113 43.4
SMO230G0066 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 1.9e-08 64.3 232 26.3
MELO3C029108.2 Cucumis melo HOM05D004681 ORTHO05D005541 5.7e-08 62.8 46 60.9
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 3.7e-07 60.1 50 54.0
Potri.001G065000 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.1e-06 58.5 100 36.0


User provided reference genes

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