Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 3.4e-161 571.6 291 100.0
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 3.8e-152 541.6 291 96.6
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.2e-135 485.0 290 83.4
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 1.9e-132 476.1 290 83.4
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 2.5e-132 475.7 289 83.0
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 1.3e-131 473.4 291 81.1
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 1.3e-128 463.4 277 84.1
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 1.1e-127 460.3 291 81.1
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 2.7e-126 455.7 291 79.7
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.8e-125 453.0 279 80.3
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 2.3e-125 452.6 291 80.1
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 3.0e-125 452.2 291 79.0
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 3.9e-125 451.8 289 78.5
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 8.7e-125 450.7 292 78.8
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 8.7e-125 450.7 289 78.9
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.5e-124 449.1 291 80.4
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 4.3e-124 448.4 289 77.9
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 9.6e-124 447.2 290 79.3
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 3.7e-123 445.3 290 77.6
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 2.4e-122 442.6 290 77.2
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 1.0e-120 437.2 290 76.9
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 4.9e-120 434.9 290 77.2
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.1e-119 433.7 290 76.9
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 2.5e-119 432.6 296 74.7
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 7.1e-119 431.0 291 75.3
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 7.1e-119 431.0 298 74.5
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 2.7e-118 429.1 290 76.6
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 1.8e-117 426.4 290 75.9
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.1e-117 424.9 290 75.5
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 1.5e-116 423.3 297 73.4
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 3.3e-116 422.2 296 75.7
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 9.7e-116 420.6 296 73.3
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 9.7e-116 420.6 290 74.1
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 9.7e-116 420.6 290 74.1
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 2.8e-115 419.1 298 73.8
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 1.1e-114 417.2 295 73.2
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.1e-114 417.2 289 74.4
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.4e-114 416.8 290 72.4
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 2.4e-114 416.0 290 73.8
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 9.0e-114 414.1 289 73.4
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 1.5e-113 413.3 298 71.8
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 4.5e-113 411.8 290 73.1
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 5.9e-113 411.4 288 74.0
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 7.7e-113 411.0 292 74.0
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 1.0e-112 410.6 294 72.8
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.0e-112 410.6 295 73.2
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.7e-112 409.8 292 73.6
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 3.8e-112 408.7 297 71.0
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.1e-111 407.1 292 73.3
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.4e-111 406.8 294 73.1
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 1.4e-111 406.8 291 72.5
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 1.4e-111 406.8 273 76.6
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 2.5e-111 406.0 290 72.8
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.2e-111 405.6 291 72.2
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.2e-111 405.6 292 72.9
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 3.2e-111 405.6 291 73.5
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 4.2e-111 405.2 291 72.2
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.2e-111 405.2 291 72.2
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 4.2e-111 405.2 296 68.9
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 7.2e-111 404.4 292 72.3
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 9.4e-111 404.1 292 72.6
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 9.4e-111 404.1 292 72.6
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.2e-110 403.7 291 71.8
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 1.6e-110 403.3 292 71.9
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 2.1e-110 402.9 298 72.1
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 2.7e-110 402.5 295 71.5
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 4.6e-110 401.7 296 72.3
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 6.1e-110 401.4 296 72.3
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 6.1e-110 401.4 297 71.4
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 1.0e-109 400.6 292 72.9
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.4e-109 400.2 291 71.5
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.4e-109 400.2 292 72.3
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 1.8e-109 399.8 292 71.9
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 3.0e-109 399.1 292 71.6
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 3.0e-109 399.1 293 72.0
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 6.7e-109 397.9 292 71.6
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.1e-108 397.1 293 72.7
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 1.1e-108 397.1 295 72.2
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.5e-108 396.7 293 72.4
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 3.3e-108 395.6 293 71.7
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 3.3e-108 395.6 293 71.3
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 3.3e-108 395.6 293 71.3
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 3.3e-108 395.6 293 70.3
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 5.7e-108 394.8 285 73.0
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 5.7e-108 394.8 294 71.8
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 7.4e-108 394.4 293 71.3
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 9.7e-108 394.0 298 70.8
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 9.7e-108 394.0 294 71.8
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 1.3e-107 393.7 293 71.3
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.3e-107 393.7 292 71.2
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.3e-107 393.7 292 71.6
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 1.7e-107 393.3 294 70.4
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 1.7e-107 393.3 294 72.4
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.8e-107 392.5 294 71.1
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.8e-107 392.5 294 71.1
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 2.8e-107 392.5 294 68.4
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 3.7e-107 392.1 292 70.9
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 4.8e-107 391.7 296 70.3
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 6.3e-107 391.3 293 71.0
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 6.3e-107 391.3 293 69.3
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 8.2e-107 391.0 292 70.2
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 8.2e-107 391.0 287 70.7
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 1.1e-106 390.6 294 70.7
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 1.1e-106 390.6 292 69.9
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 1.4e-106 390.2 293 69.6
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 1.4e-106 390.2 292 69.9
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.4e-106 390.2 292 69.9
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.8e-106 389.8 292 69.9
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 1.8e-106 389.8 292 69.9
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.8e-106 389.8 292 69.9
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 2.4e-106 389.4 292 69.9
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 2.4e-106 389.4 292 69.9
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 4.1e-106 388.7 292 69.9
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 4.1e-106 388.7 297 68.4
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 5.3e-106 388.3 286 71.0
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 6.9e-106 387.9 292 69.5
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 6.9e-106 387.9 292 69.5
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 6.9e-106 387.9 292 69.5
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 1.2e-105 387.1 292 69.5
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 2.0e-105 386.3 290 69.0
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 3.4e-105 385.6 294 70.1
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 3.4e-105 385.6 294 70.1
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 1.0e-104 384.0 288 70.1
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.9e-104 382.5 286 72.0
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 3.8e-104 382.1 288 69.8
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 5.0e-104 381.7 281 71.5
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 2.5e-103 379.4 301 66.8
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 4.2e-103 378.6 286 69.2
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 2.7e-102 375.9 300 67.0
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 3.6e-102 375.6 296 65.2
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 1.0e-101 374.0 297 69.4
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 3.9e-101 372.1 300 66.3
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 3.9e-101 372.1 297 69.0
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 2.8e-99 365.9 304 64.5
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.7e-99 365.5 292 66.4
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 3.5e-97 359.0 244 74.2
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 1.0e-96 357.5 297 66.3
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 1.0e-96 357.5 285 65.6
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 2.9e-96 355.9 296 66.2
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 4.2e-95 352.1 296 64.9
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 8.0e-94 347.8 291 63.6
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 8.2e-91 337.8 296 61.8
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 2.7e-86 322.8 260 65.0
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 4.8e-83 312.0 294 60.2
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 6.5e-80 301.6 193 80.8
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 2.0e-76 290.0 282 55.3
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 5.5e-71 271.9 215 69.3
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 4.0e-69 265.8 276 53.3
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 3.7e-67 259.2 281 52.3
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 1.6e-65 253.8 272 52.2
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 4.7e-62 242.3 282 47.2
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 4.0e-61 239.2 165 73.3
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 1.5e-55 220.7 269 50.9
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 2.6e-52 209.9 137 76.6
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 1.0e-48 198.0 144 69.4
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.1e-47 194.5 127 76.4
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 6.4e-43 178.7 152 63.2
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.7e-27 127.5 332 28.0
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 1.7e-24 117.5 103 58.3
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 6.6e-24 115.5 112 58.0
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 1.5e-23 114.4 84 73.8
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 6.2e-22 109.0 112 55.4
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 2.2e-19 100.5 98 57.1
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 1.7e-11 74.3 72 54.2
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 5.5e-10 69.3 72 50.0
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 1.2e-09 68.2 86 51.2


User provided reference genes

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