Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.6e-165 587.4 529 100.0
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.7e-96 357.5 730 58.6
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.5e-89 332.4 184 93.5
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 4.0e-79 300.4 188 85.6
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.5e-78 296.2 740 59.5
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.5e-78 296.2 740 59.5
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.7e-74 285.0 188 80.9
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.3e-74 284.6 185 82.7
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 5.2e-71 273.5 209 68.9
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 1.3e-69 268.9 188 75.0
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 8.3e-69 266.2 184 76.1
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.9e-68 265.0 219 70.3
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 6.0e-67 260.0 188 71.3
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 1.9e-65 255.0 188 71.8
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.6e-64 250.8 160 81.9
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 6.2e-64 250.0 188 70.7
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 1.4e-63 248.8 186 68.8
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 3.1e-63 247.7 188 69.7
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 4.0e-63 247.3 182 73.1
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 6.8e-63 246.5 185 69.2
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 1.5e-62 245.4 181 69.6
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 4.4e-62 243.8 188 67.0
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 7.6e-62 243.0 184 69.6
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 9.9e-62 242.7 176 70.5
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 9.9e-62 242.7 184 68.5
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.2e-61 241.5 176 70.5
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 6.4e-61 240.0 179 70.9
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 1.1e-60 239.2 179 69.8
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 1.1e-60 239.2 186 68.3
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.4e-60 238.8 176 68.2
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 1.9e-60 238.4 179 68.2
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 1.9e-60 238.4 179 68.2
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 4.1e-60 237.3 172 70.3
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 1.2e-59 235.7 169 74.0
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 2.1e-59 235.0 172 69.2
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 2.1e-59 235.0 184 66.8
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 2.7e-59 234.6 174 70.7
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 3.5e-59 234.2 171 73.1
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 3.5e-59 234.2 177 70.1
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.0e-58 232.6 178 68.0
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 1.7e-58 231.9 181 66.9
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 2.3e-58 231.5 167 70.7
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 3.9e-58 230.7 181 66.3
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 8.6e-58 229.6 181 65.7
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 8.6e-58 229.6 172 69.2
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.5e-57 228.8 181 66.3
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 2.5e-57 228.0 170 68.8
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 3.3e-57 227.6 179 65.9
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 7.3e-57 226.5 176 65.9
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 2.1e-56 224.9 179 64.8
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 2.8e-56 224.6 171 67.3
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 2.8e-56 224.6 188 62.2
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 8.1e-56 223.0 184 63.6
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 1.1e-55 222.6 179 65.4
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 2.6e-54 218.0 164 70.1
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 4.4e-54 217.2 169 65.7
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 5.8e-54 216.9 178 63.5
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 9.9e-54 216.1 110 98.2
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 1.3e-53 215.7 163 68.1
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 1.3e-53 215.7 177 63.8
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 1.7e-53 215.3 181 65.2
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 2.9e-53 214.5 174 65.5
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 1.4e-52 212.2 156 70.5
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 1.4e-52 212.2 173 64.2
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 2.4e-52 211.5 179 60.3
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 2.4e-52 211.5 189 61.4
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 4.2e-52 210.7 175 62.9
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 2.7e-51 208.0 167 65.9
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 2.3e-50 204.9 170 61.8
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 3.9e-50 204.1 181 59.7
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 3.9e-50 204.1 181 59.1
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 6.6e-50 203.4 186 58.1
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 2.5e-49 201.4 159 64.8
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 4.3e-49 200.7 168 62.5
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 4.3e-49 200.7 173 61.3
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 7.3e-49 199.9 178 61.2
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 7.3e-49 199.9 171 60.8
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 3.6e-48 197.6 173 60.7
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 1.4e-47 195.7 182 56.6
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 1.8e-47 195.3 158 63.3
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 9.0e-47 193.0 167 59.9
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 5.8e-46 190.3 160 66.9
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 4.2e-44 184.1 137 67.2
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 4.6e-43 180.6 131 71.0
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 3.9e-42 177.6 120 75.0
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 6.7e-42 176.8 131 71.0
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 1.1e-41 176.0 140 66.4
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 3.3e-41 174.5 144 62.5
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 6.9e-39 166.8 160 56.9
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 9.0e-39 166.4 131 64.1
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 4.5e-38 164.1 144 61.1
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 5.8e-38 163.7 161 55.9
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 1.3e-37 162.5 148 59.5
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 1.3e-37 162.5 143 57.3
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 1.3e-37 162.5 176 51.7
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 4.9e-37 160.6 116 70.7
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 6.4e-37 160.2 149 59.1
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 1.1e-36 159.5 157 54.8
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 1.1e-36 159.5 157 54.8
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 5.5e-36 157.1 125 66.4
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 2.1e-35 155.2 157 54.8
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 2.7e-35 154.8 129 60.5
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 1.3e-34 152.5 107 70.1
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 1.8e-34 152.1 140 57.1
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 3.9e-34 151.0 148 56.1
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 6.7e-34 150.2 193 47.2
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 3.3e-33 147.9 121 58.7
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 3.7e-32 144.4 143 58.7
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 1.4e-31 142.5 117 57.3
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 5.3e-31 140.6 129 58.1
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 9.0e-31 139.8 149 49.7
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 1.2e-30 139.4 132 55.3
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 1.2e-30 139.4 153 50.3
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 2.5e-28 131.7 131 53.4
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 3.5e-27 127.9 134 47.8
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 1.9e-25 122.1 129 48.8
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 7.4e-25 120.2 105 60.0
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 6.3e-24 117.1 105 60.0
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 6.9e-23 113.6 127 50.4
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 2.6e-22 111.7 111 55.0
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 6.5e-21 107.1 92 55.4
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 5.5e-20 104.0 120 44.2
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 1.2e-19 102.8 88 53.4
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.7e-19 101.7 94 53.2
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 2.5e-17 95.1 98 46.9
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 2.5e-17 95.1 130 42.3
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 9.7e-17 93.2 89 52.8
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 6.1e-11 73.9 69 58.0
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 6.1e-11 73.9 46 80.4
HPP92_017173 Vanilla planifolia HOM05D006008 ORTHO05D007334 8.2e-08 63.5 81 42.0
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 5.3e-07 60.8 204 27.5
CDE02G4775 Ceratophyllum demersum HOM05D000424 ORTHO05D002854 9.1e-07 60.1 166 27.7
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 1.2e-06 59.7 192 25.0


User provided reference genes

Program Settings