Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 1.5e-184 649.4 331 100.0
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 2.2e-116 422.9 279 78.5
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 1.8e-113 413.3 270 79.3
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.1e-112 410.6 273 78.8
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.1e-112 410.6 273 78.8
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 3.3e-112 409.1 270 80.4
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 3.3e-112 409.1 270 80.4
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 3.3e-112 409.1 270 80.4
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 3.3e-112 409.1 270 80.4
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 9.6e-112 407.5 273 79.5
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.1e-111 406.4 273 78.0
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.8e-111 406.0 270 79.3
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.8e-111 406.0 270 79.3
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 4.8e-111 405.2 270 79.6
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 4.8e-111 405.2 274 79.6
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 4.8e-111 405.2 274 79.6
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 4.8e-111 405.2 274 79.6
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 4.8e-111 405.2 274 79.6
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 9.0e-110 401.0 272 79.4
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 9.0e-110 401.0 272 77.2
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 6.7e-105 384.8 282 74.5
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 4.3e-104 382.1 274 74.8
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 4.3e-104 382.1 274 74.8
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 1.3e-103 380.6 274 73.4
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 4.8e-103 378.6 272 75.0
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 1.4e-102 377.1 275 74.5
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 7.6e-101 371.3 272 72.8
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 1.7e-100 370.2 274 74.5
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 2.9e-100 369.4 270 72.6
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 3.2e-99 365.9 278 69.4
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 3.2e-99 365.9 277 69.3
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 3.2e-99 365.9 278 69.4
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 3.2e-99 365.9 278 69.4
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 3.2e-99 365.9 278 69.4
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 3.2e-99 365.9 278 69.4
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 4.2e-99 365.5 278 69.4
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 4.2e-99 365.5 278 69.4
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 1.2e-98 364.0 278 69.1
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 1.2e-98 364.0 278 69.1
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 1.2e-98 364.0 278 69.1
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 1.2e-98 364.0 278 69.1
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 1.2e-98 364.0 278 69.1
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 2.1e-98 363.2 276 69.2
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 6.1e-98 361.7 278 69.1
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 9.7e-96 354.4 273 70.7
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.2e-93 347.4 227 77.5
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.9e-93 345.1 273 68.1
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 7.2e-91 338.2 269 68.0
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 3.4e-85 319.3 274 67.5
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.6e-82 310.5 260 66.9
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 1.1e-80 304.3 221 74.7
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 2.4e-78 296.6 270 63.3
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 4.0e-73 279.3 273 59.7
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 2.8e-71 273.1 225 63.6
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 1.1e-70 271.2 198 76.8
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 1.1e-70 271.2 252 61.1
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.2e-68 263.5 180 80.0
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 3.2e-67 259.6 232 59.5
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 1.8e-65 253.8 225 60.4
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 8.8e-65 251.5 198 65.7
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 2.8e-63 246.5 213 66.2
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 1.2e-61 241.1 186 72.6
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 1.2e-56 224.6 148 81.8
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 1.5e-56 224.2 176 69.9
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 5.7e-56 222.2 178 69.7
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 5.4e-54 215.7 180 67.8
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.2e-53 214.5 232 52.6
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.3e-51 206.5 224 50.9
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.3e-51 206.5 224 50.9
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.3e-51 206.5 224 50.9
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.3e-51 206.5 224 50.9
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.3e-51 206.5 224 50.9
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 9.5e-51 204.9 132 78.8
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 9.5e-51 204.9 132 78.8
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 9.5e-51 204.9 132 78.8
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 8.0e-50 201.8 172 66.9
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 8.0e-50 201.8 181 61.3
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 1.0e-49 201.4 122 80.3
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 6.8e-49 198.7 275 43.6
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 9.8e-48 194.9 128 77.3
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 1.4e-46 191.0 142 68.3
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 4.1e-46 189.5 166 61.4
HanXRQChr08g0212001 Helianthus annuus HOM05D005034 ORTHO05D006234 5.0e-44 182.6 129 77.5
Hund25564 Selenicereus undatus HOM05D005034 ORTHO05D006234 1.7e-39 167.5 251 47.4
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 3.2e-38 163.3 115 79.1
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 5.4e-38 162.5 185 57.3
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 9.2e-38 161.8 239 40.2
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 1.3e-36 157.9 98 77.6
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 3.9e-36 156.4 155 60.6
Hma1.2p1_0665F.1_g199050 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 3.3e-35 153.3 92 87.0
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.8e-34 150.2 201 44.8
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.6e-34 149.8 201 44.3
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 2.6e-32 143.7 257 36.2
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 3.7e-31 139.8 79 78.5
BolC2t10593H Brassica oleracea HOM05D005034 ORTHO05D006234 1.1e-30 138.3 110 69.1
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.1e-30 138.3 116 62.9
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.1e-30 138.3 85 76.5
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.9e-30 137.5 79 77.2
Manes.18G138354 Manihot esculenta HOM05D005034 ORTHO05D006234 1.9e-30 137.5 94 76.6
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 3.2e-30 136.7 85 76.5
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 2.3e-28 130.6 67 85.1
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 2.8e-26 123.6 81 67.9
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 4.0e-25 119.8 67 83.6
BolC6t36207H Brassica oleracea HOM05D005034 ORTHO05D006234 8.9e-25 118.6 96 65.6
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 1.5e-24 117.9 89 73.0
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 1.5e-24 117.9 63 81.0
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 2.0e-24 117.5 224 39.7
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 3.4e-24 116.7 101 61.4
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 4.4e-24 116.3 67 91.0
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.8e-24 115.9 58 84.5
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 1.3e-23 114.8 91 57.1
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-22 109.4 95 68.4
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.2e-21 108.2 82 63.4
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.7e-21 107.1 56 83.9
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 6.0e-21 105.9 56 82.1
Lalb_Chr05g0227101 Lupinus albus HOM05D005034 ORTHO05D006234 1.3e-20 104.8 67 83.6
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 1.3e-20 104.8 130 50.0
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 4.3e-19 99.8 136 48.5
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 7.3e-19 99.0 49 85.7
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 7.3e-19 99.0 61 85.2
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 2.8e-18 97.1 74 70.3
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 2.8e-18 97.1 122 49.2
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.2e-16 91.7 43 90.7
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.2e-16 91.7 43 90.7
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 1.3e-15 88.2 51 72.5
arahy.Tifrunner.gnm1.ann1.A5A200 Arachis hypogaea HOM05D005034 ORTHO05D006234 3.5e-13 80.1 94 57.4
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 1.0e-12 78.6 55 70.9
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 3.0e-12 77.0 33 93.9
arahy.Tifrunner.gnm1.ann1.5N7P5J Arachis hypogaea HOM05D005034 ORTHO05D006234 6.6e-12 75.9 83 54.2
Nitab4.5_0007979g0110 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.5e-11 74.7 48 85.4
CAN.G262.6 Capsicum annuum HOM05D005034 ORTHO05D006234 2.8e-10 70.5 70 60.0
CARHR178440 Cardamine hirsuta HOM05D005034 ORTHO05D006234 4.8e-10 69.7 42 85.7
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.8e-10 69.7 29 89.7
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 6.2e-10 69.3 40 85.0
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 8.1e-10 68.9 29 89.7
Solyc02g011730.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.2e-08 65.1 46 69.6
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 1.5e-08 64.7 33 78.8
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 7.6e-08 62.4 26 88.5
Solyc02g150101.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 9.9e-08 62.0 56 58.9


User provided reference genes

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